Wall clock time and date at job start Sat Apr 11 2020 05:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00078 * 2 1 4 4 H 1.08996 * 110.63804 * 26.85563 * 3 2 1 5 5 C 1.54327 * 110.86901 * 263.61029 * 3 2 1 6 6 N 1.47024 * 107.26774 * 219.37128 * 5 3 2 7 7 C 1.36941 * 125.64618 * 179.20447 * 6 5 3 8 8 H 1.08005 * 119.99780 * 179.68989 * 7 6 5 9 9 C 1.38813 * 119.99913 * 359.69358 * 7 6 5 10 10 N 1.31616 * 119.99926 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99719 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47563 * 59.99703 * 11 9 7 13 13 H 1.48504 * 109.46777 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47166 * 299.99426 * 11 9 7 15 15 C 1.47426 * 108.70449 * 358.94057 * 6 5 3 16 16 C 1.54912 * 104.83261 * 24.12870 * 15 6 5 17 17 H 1.08997 * 111.00012 * 81.06132 * 16 15 6 18 18 N 1.46497 * 111.00243 * 204.87751 * 16 15 6 19 19 C 1.34773 * 120.00133 * 273.54537 * 18 16 15 20 20 O 1.21282 * 120.00075 * 359.97438 * 19 18 16 21 21 C 1.50697 * 120.00079 * 180.02562 * 19 18 16 22 22 C 1.52998 * 109.47295 * 179.97438 * 21 19 18 23 23 H 1.09005 * 109.46996 * 305.00000 * 22 21 19 24 24 C 1.53003 * 109.47384 * 184.99404 * 22 21 19 25 25 N 1.46508 * 109.47097 * 64.99728 * 22 21 19 26 26 C 1.46762 * 124.34982 * 239.72469 * 25 22 21 27 27 C 1.54652 * 105.38397 * 162.85109 * 26 25 22 28 28 C 1.54630 * 101.68203 * 25.77176 * 27 26 25 29 29 C 1.34413 * 124.34740 * 60.02785 * 25 22 21 30 30 O 1.21282 * 124.94990 * 0.38347 * 29 25 22 31 31 H 1.08992 * 109.47089 * 300.00153 * 1 2 3 32 32 H 1.09000 * 109.46708 * 60.00384 * 1 2 3 33 33 H 1.08994 * 109.46840 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.88184 * 99.95552 * 5 3 2 35 35 H 1.09002 * 109.88385 * 338.78559 * 5 3 2 36 36 H 0.97001 * 119.99407 * 180.02562 * 10 9 7 37 37 H 1.09002 * 110.36518 * 142.96440 * 15 6 5 38 38 H 1.08997 * 110.36787 * 265.28818 * 15 6 5 39 39 H 0.97002 * 119.99825 * 93.54988 * 18 16 15 40 40 H 1.09005 * 109.46994 * 299.99757 * 21 19 18 41 41 H 1.09001 * 109.47289 * 59.99307 * 21 19 18 42 42 H 1.09007 * 109.46304 * 60.00400 * 24 22 21 43 43 H 1.08996 * 109.47068 * 179.97438 * 24 22 21 44 44 H 1.08994 * 109.47105 * 300.00320 * 24 22 21 45 45 H 1.08993 * 110.24932 * 281.98800 * 26 25 22 46 46 H 1.09007 * 110.24183 * 43.98154 * 26 25 22 47 47 H 1.08995 * 111.19722 * 267.59889 * 27 26 25 48 48 H 1.08997 * 110.82242 * 143.77778 * 27 26 25 49 49 H 1.08998 * 110.48811 * 216.30575 * 28 27 26 50 50 H 1.08999 * 110.48815 * 93.66067 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3352 2.0266 0.4608 5 6 2.3805 1.7424 -1.4331 6 7 3.6669 2.4499 -1.3550 7 6 4.3496 2.9841 -2.4151 8 1 5.2891 3.4914 -2.2521 9 6 3.8341 2.8737 -3.6992 10 7 2.6894 2.2551 -3.8979 11 14 4.7657 3.6017 -5.1454 12 1 6.1053 2.9682 -5.2409 13 1 4.0093 3.3504 -6.3985 14 1 4.9231 5.0649 -4.9468 15 6 4.0971 2.4947 0.0544 16 6 3.3817 1.2958 0.7257 17 1 3.9172 0.3655 0.5364 18 7 3.2173 1.5207 2.1639 19 6 4.2053 1.1831 3.0160 20 8 5.2304 0.6927 2.5923 21 6 4.0360 1.4139 4.4956 22 6 5.2931 0.9467 5.2319 23 1 5.4996 -0.0923 4.9749 24 6 5.0737 1.0649 6.7414 25 7 6.4296 1.7827 4.8367 26 6 7.6501 1.2738 4.2002 27 6 8.3386 2.5135 3.5832 28 6 7.8006 3.6505 4.4827 29 6 6.4907 3.1134 5.0159 30 8 5.6220 3.7859 5.5298 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.6138 2.4096 -1.8269 35 1 2.4776 0.8664 -2.0743 36 1 2.3294 2.1776 -4.7953 37 1 5.1787 2.3788 0.1248 38 1 3.7842 3.4306 0.5171 39 1 2.3972 1.9125 2.5029 40 1 3.8791 2.4764 4.6819 41 1 3.1745 0.8510 4.8549 42 1 4.2281 0.4429 7.0354 43 1 5.9691 0.7316 7.2659 44 1 4.8672 2.1039 6.9983 45 1 8.2981 0.8100 4.9437 46 1 7.3973 0.5564 3.4193 47 1 8.0337 2.6587 2.5468 48 1 9.4228 2.4339 3.6618 49 1 7.6322 4.5536 3.8962 50 1 8.4927 3.8494 5.3009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213716851.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:43 Heat of formation + Delta-G solvation = -106.971221 kcal Electronic energy + Delta-G solvation = -31315.074063 eV Core-core repulsion = 27149.358752 eV Total energy + Delta-G solvation = -4165.715311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.69417 -40.80675 -39.56174 -37.55353 -37.30121 -35.83746 -35.49644 -33.69877 -31.24373 -30.56179 -29.47631 -28.34666 -28.25404 -27.51872 -26.00954 -23.73254 -22.76890 -22.43942 -22.10326 -21.39322 -19.76743 -19.14718 -18.21386 -17.87304 -17.75791 -17.34760 -17.18909 -16.63125 -16.24057 -15.86922 -15.82229 -15.71860 -15.18325 -15.07396 -14.86819 -14.64046 -14.59048 -14.38127 -14.09800 -13.77301 -13.65490 -13.63892 -13.28073 -13.03369 -12.89809 -12.78991 -12.74130 -12.67569 -12.57280 -12.38693 -12.32142 -12.13568 -12.05284 -11.88148 -11.82361 -11.66949 -10.90312 -10.78309 -10.58549 -10.53552 -10.08313 -9.60009 -8.99741 -7.89169 -5.27850 1.44559 1.48491 1.54631 1.62741 1.67823 2.06316 2.16094 2.45299 2.74671 3.30147 3.46457 3.49657 3.63919 3.69617 3.81314 3.89343 3.89581 4.06678 4.08937 4.17027 4.27628 4.32476 4.41560 4.44800 4.54743 4.57859 4.63483 4.69290 4.71621 4.76315 4.78431 4.83458 4.86101 4.93121 5.00519 5.01899 5.06207 5.25320 5.29816 5.30861 5.35556 5.47449 5.62667 5.73166 6.11067 6.27063 6.28388 6.55363 7.02416 7.24217 7.28373 7.67384 8.30143 9.20136 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011767 B = 0.003414 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.965441 B = 8199.934653 C = 9988.849125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.076 3.924 4 H 0.092 0.908 5 C 0.176 3.824 6 N -0.621 5.621 7 C -0.251 4.251 8 H 0.082 0.918 9 C -0.060 4.060 10 N -0.949 5.949 11 Si 0.982 3.018 12 H -0.277 1.277 13 H -0.291 1.291 14 H -0.275 1.275 15 C 0.135 3.865 16 C 0.157 3.843 17 H 0.076 0.924 18 N -0.708 5.708 19 C 0.512 3.488 20 O -0.564 6.564 21 C -0.150 4.150 22 C 0.165 3.835 23 H 0.100 0.900 24 C -0.156 4.156 25 N -0.602 5.602 26 C 0.102 3.898 27 C -0.125 4.125 28 C -0.153 4.153 29 C 0.503 3.497 30 O -0.576 6.576 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.102 0.898 34 H 0.020 0.980 35 H 0.019 0.981 36 H 0.249 0.751 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.412 0.588 40 H 0.098 0.902 41 H 0.136 0.864 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.092 0.908 46 H 0.074 0.926 47 H 0.060 0.940 48 H 0.117 0.883 49 H 0.093 0.907 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.475 -3.778 22.034 22.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C 0.017 3.983 4 H 0.110 0.890 5 C 0.050 3.950 6 N -0.349 5.349 7 C -0.379 4.379 8 H 0.100 0.900 9 C -0.253 4.253 10 N -0.597 5.597 11 Si 0.809 3.191 12 H -0.203 1.203 13 H -0.217 1.217 14 H -0.200 1.200 15 C 0.008 3.992 16 C 0.050 3.950 17 H 0.094 0.906 18 N -0.360 5.360 19 C 0.300 3.700 20 O -0.443 6.443 21 C -0.190 4.190 22 C 0.062 3.938 23 H 0.118 0.882 24 C -0.214 4.214 25 N -0.334 5.334 26 C -0.020 4.020 27 C -0.162 4.162 28 C -0.193 4.193 29 C 0.293 3.707 30 O -0.458 6.458 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.121 0.879 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.048 0.952 39 H 0.248 0.752 40 H 0.116 0.884 41 H 0.154 0.846 42 H 0.110 0.890 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.110 0.890 46 H 0.093 0.907 47 H 0.079 0.921 48 H 0.135 0.865 49 H 0.112 0.888 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.775 -4.025 21.804 22.491 hybrid contribution -0.391 0.790 -1.384 1.641 sum 3.385 -3.235 20.419 20.949 Atomic orbital electron populations 1.22997 0.79294 1.03980 1.00714 1.87886 1.21772 1.26821 1.94924 1.23464 0.93683 0.85229 0.95905 0.89036 1.21274 0.87105 0.94668 0.91977 1.44519 1.22185 1.66143 1.02040 1.19409 1.03035 1.29533 0.85959 0.90028 1.25680 0.98417 1.01280 0.99951 1.70156 1.20757 1.47995 1.20759 0.85112 0.77601 0.78304 0.78059 1.20329 1.21693 1.20043 1.21858 0.97207 0.95481 0.84619 1.21737 0.95322 0.97967 0.79996 0.90593 1.45793 1.20327 1.64510 1.05406 1.21163 0.82626 0.76610 0.89585 1.90640 1.28810 1.44931 1.79875 1.22178 1.01817 1.05464 0.89586 1.20845 0.83393 0.94982 0.94567 0.88172 1.22091 1.03406 1.02962 0.92905 1.48390 1.18379 1.07334 1.59297 1.22263 0.84770 0.97463 0.97498 1.22595 1.02474 0.92673 0.98492 1.22370 0.95055 1.00090 1.01769 1.21414 0.89147 0.82569 0.77612 1.90637 1.45080 1.63031 1.47003 0.91740 0.94750 0.87936 0.96218 0.96246 0.94153 0.94716 0.95248 0.75151 0.88387 0.84601 0.89026 0.91517 0.92890 0.89008 0.90749 0.92075 0.86487 0.88815 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.85 113.37 1.23 1.91 16 2 O -0.40 -14.18 10.44 -148.98 -1.56 -15.73 16 3 C 0.08 2.88 3.07 31.78 0.10 2.98 16 4 H 0.09 2.92 7.68 -2.39 -0.02 2.90 16 5 C 0.18 8.90 5.15 86.73 0.45 9.35 16 6 N -0.62 -33.28 3.39 -691.96 -2.35 -35.63 16 7 C -0.25 -14.52 10.28 84.03 0.86 -13.66 16 8 H 0.08 4.54 7.83 -2.91 -0.02 4.51 16 9 C -0.06 -3.46 5.49 84.86 0.47 -3.00 16 10 N -0.95 -57.53 10.31 21.65 0.22 -57.30 16 11 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 14 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 15 C 0.14 5.98 6.93 86.86 0.60 6.58 16 16 C 0.16 5.88 3.04 46.38 0.14 6.02 16 17 H 0.08 3.30 7.73 -2.39 -0.02 3.28 16 18 N -0.71 -19.96 5.23 -435.98 -2.28 -22.24 16 19 C 0.51 14.32 7.69 87.66 0.67 15.00 16 20 O -0.56 -19.29 13.38 -3.04 -0.04 -19.33 16 21 C -0.15 -3.02 5.13 29.85 0.15 -2.87 16 22 C 0.17 3.17 2.43 44.99 0.11 3.28 16 23 H 0.10 1.85 7.88 -2.38 -0.02 1.83 16 24 C -0.16 -2.38 9.20 71.98 0.66 -1.72 16 25 N -0.60 -13.14 2.20 -793.68 -1.74 -14.88 16 26 C 0.10 1.90 6.87 86.89 0.60 2.50 16 27 C -0.12 -2.12 7.19 31.71 0.23 -1.89 16 28 C -0.15 -2.83 6.86 30.59 0.21 -2.62 16 29 C 0.50 12.65 7.39 87.90 0.65 13.30 16 30 O -0.58 -18.07 15.07 -3.04 -0.05 -18.11 16 31 H 0.06 1.30 8.11 -2.39 -0.02 1.28 16 32 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.02 1.09 7.51 -2.39 -0.02 1.07 16 35 H 0.02 1.13 7.30 -2.39 -0.02 1.12 16 36 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 37 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.41 8.94 8.52 -92.71 -0.79 8.15 16 40 H 0.10 2.27 6.65 -2.38 -0.02 2.25 16 41 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.05 1.06 6.77 -2.39 -0.02 1.04 16 45 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.07 1.73 6.74 -2.38 -0.02 1.72 16 47 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -78.08 397.16 1.51 -76.57 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.15 Total: 23.18 kcal Atomic # 6 Polarization: 28.03 SS G_CDS: 7.13 Total: 35.15 kcal Atomic # 7 Polarization: -123.90 SS G_CDS: -6.15 Total: -130.05 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -1.64 Total: -53.18 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -78.08 1.51 -76.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213716851.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.401 kcal (2) G-P(sol) polarization free energy of solvation -78.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds