Wall clock time and date at job start Sat Apr 11 2020 05:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47173 * 2 1 4 4 C 1.53000 * 109.47085 * 120.00052 * 2 1 3 5 5 C 1.50700 * 109.47226 * 185.00176 * 4 2 1 6 6 O 1.21280 * 119.99883 * 359.97438 * 5 4 2 7 7 N 1.34773 * 120.00375 * 180.02562 * 5 4 2 8 8 C 1.46500 * 120.00200 * 180.02562 * 7 5 4 9 9 H 1.09002 * 110.88857 * 34.29247 * 8 7 5 10 10 C 1.54915 * 111.03417 * 270.38731 * 8 7 5 11 11 N 1.47418 * 104.83107 * 204.89999 * 10 8 7 12 12 C 1.36939 * 125.64960 * 204.07747 * 11 10 8 13 13 H 1.08001 * 119.99891 * 0.04058 * 12 11 10 14 14 C 1.38809 * 120.00452 * 180.02562 * 12 11 10 15 15 N 1.31623 * 119.99639 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00533 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47193 * 89.99782 * 16 14 12 18 18 H 1.48496 * 109.47198 * 210.00144 * 16 14 12 19 19 H 1.48500 * 109.46476 * 329.99773 * 16 14 12 20 20 C 1.47029 * 108.70495 * 24.13113 * 11 10 8 21 21 C 1.54327 * 107.26790 * 358.93814 * 20 11 10 22 22 H 1.09004 * 110.71649 * 219.44279 * 21 20 11 23 23 O 1.42898 * 110.86978 * 96.24495 * 21 20 11 24 24 N 1.46497 * 109.47042 * 239.99934 * 2 1 3 25 25 C 1.45752 * 117.95061 * 120.00133 * 24 2 1 26 26 C 1.52913 * 110.49117 * 160.92305 * 25 24 2 27 27 C 1.53341 * 108.67525 * 50.75340 * 26 25 24 28 28 C 1.53071 * 108.42503 * 292.47068 * 27 26 25 29 29 C 1.33356 * 117.94736 * 299.73687 * 24 2 1 30 30 O 1.21282 * 118.24285 * 2.22275 * 29 24 2 31 31 H 1.08997 * 109.47173 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46877 * 300.00180 * 1 2 3 33 33 H 1.08996 * 109.47465 * 60.00043 * 1 2 3 34 34 H 1.09001 * 109.47469 * 64.99777 * 4 2 1 35 35 H 1.08997 * 109.47034 * 304.99480 * 4 2 1 36 36 H 0.97001 * 119.99748 * 359.97438 * 7 5 4 37 37 H 1.08995 * 110.36257 * 323.74273 * 10 8 7 38 38 H 1.08997 * 110.36405 * 86.05992 * 10 8 7 39 39 H 0.97001 * 119.99838 * 179.97438 * 15 14 12 40 40 H 1.08993 * 109.88066 * 239.51797 * 20 11 10 41 41 H 1.08996 * 110.00664 * 118.42784 * 20 11 10 42 42 H 0.96699 * 114.00256 * 66.38577 * 23 21 20 43 43 H 1.09002 * 109.30118 * 281.23902 * 25 24 2 44 44 H 1.09004 * 109.29847 * 40.81454 * 25 24 2 45 45 H 1.09007 * 109.60458 * 170.51266 * 26 25 24 46 46 H 1.09001 * 109.60797 * 290.83242 * 26 25 24 47 47 H 1.09002 * 109.67473 * 52.20223 * 27 26 25 48 48 H 1.08998 * 109.67666 * 172.73315 * 27 26 25 49 49 H 1.09000 * 109.40110 * 169.02685 * 28 27 26 50 50 H 1.08995 * 109.39724 * 288.76707 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3128 6 8 4.1450 -0.0211 0.4441 7 7 4.2150 -1.1805 2.3343 8 6 5.6749 -1.0766 2.3963 9 1 6.0138 -0.1204 1.9975 10 6 6.3485 -2.2579 1.6541 11 7 7.6777 -2.3871 2.2784 12 6 8.7830 -2.9456 1.6940 13 1 8.7228 -3.3378 0.6896 14 6 9.9810 -3.0072 2.3924 15 7 10.0544 -2.5293 3.6166 16 14 11.4891 -3.7683 1.5950 17 1 12.2507 -2.7178 0.8731 18 1 12.3508 -4.3731 2.6423 19 1 11.0643 -4.8193 0.6357 20 6 7.6197 -1.8183 3.6330 21 6 6.1864 -1.2872 3.8459 22 1 6.2019 -0.3431 4.3904 23 8 5.3831 -2.2505 4.5306 24 7 2.0183 -0.6906 -1.1961 25 6 2.8530 0.0602 -2.1256 26 6 3.6412 -0.8916 -3.0261 27 6 2.6684 -1.9063 -3.6389 28 6 2.1401 -2.8069 -2.5196 29 6 1.6757 -1.9685 -1.3637 30 8 0.9460 -2.4797 -0.5408 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.7516 -1.7715 1.2056 35 1 1.6054 -0.2617 2.1369 36 1 3.7326 -1.6557 3.0288 37 1 5.7724 -3.1723 1.7952 38 1 6.4483 -2.0314 0.5926 39 1 10.8915 -2.5727 4.1048 40 1 8.3351 -1.0009 3.7227 41 1 7.8430 -2.5888 4.3709 42 1 5.6612 -2.4186 5.4413 43 1 2.2207 0.6990 -2.7424 44 1 3.5511 0.6801 -1.5629 45 1 4.1273 -0.3251 -3.8205 46 1 4.3944 -1.4138 -2.4360 47 1 1.8378 -1.3803 -4.1096 48 1 3.1886 -2.5110 -4.3817 49 1 1.3079 -3.4019 -2.8959 50 1 2.9359 -3.4715 -2.1836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219629023.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:50 Heat of formation + Delta-G solvation = -92.614408 kcal Electronic energy + Delta-G solvation = -31611.094777 eV Core-core repulsion = 27446.002023 eV Total energy + Delta-G solvation = -4165.092753 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.95391 -39.40855 -37.86681 -36.44264 -35.34151 -34.82667 -33.85176 -31.81658 -31.27980 -29.56667 -28.86439 -27.94179 -26.65649 -24.57077 -24.39239 -23.33700 -21.53733 -20.59894 -20.24657 -19.83025 -18.41016 -17.49041 -17.00447 -16.83646 -16.64514 -15.85660 -15.78063 -15.20498 -14.98502 -14.75725 -14.38339 -14.14456 -14.00480 -13.94698 -13.83063 -13.31093 -13.22648 -12.97600 -12.76630 -12.62107 -12.38645 -12.28715 -11.97880 -11.86556 -11.69486 -11.43449 -11.28598 -11.07759 -11.02645 -10.95706 -10.89110 -10.83088 -10.51660 -10.44230 -10.12590 -9.82236 -9.51434 -9.38225 -9.29061 -8.69045 -8.66409 -8.59300 -6.87896 -5.75656 -3.08559 2.64790 2.91099 3.00917 3.38810 3.42177 3.44877 3.47697 4.45023 4.48615 4.57410 4.65343 4.67265 4.70714 4.80797 4.94308 5.14489 5.26972 5.29428 5.30410 5.35384 5.41100 5.44952 5.50850 5.54970 5.58639 5.67337 5.71396 5.71861 5.73418 5.77123 5.87040 5.91602 5.96453 6.10088 6.14088 6.18511 6.23799 6.56889 6.64109 6.68618 6.97421 7.32973 7.44043 7.53905 7.71595 7.89169 8.08238 8.19199 8.19506 8.55524 9.17145 9.77419 10.42210 11.36621 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013642 B = 0.003265 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.058687 B = 8574.838690 C = 9889.542873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.161 3.839 3 H 0.091 0.909 4 C -0.164 4.164 5 C 0.512 3.488 6 O -0.546 6.546 7 N -0.709 5.709 8 C 0.141 3.859 9 H 0.101 0.899 10 C 0.134 3.866 11 N -0.600 5.600 12 C -0.224 4.224 13 H 0.079 0.921 14 C -0.009 4.009 15 N -0.926 5.926 16 Si 0.914 3.086 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.155 3.845 21 C 0.067 3.933 22 H 0.059 0.941 23 O -0.567 6.567 24 N -0.583 5.583 25 C 0.115 3.885 26 C -0.136 4.136 27 C -0.122 4.122 28 C -0.136 4.136 29 C 0.517 3.483 30 O -0.558 6.558 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.406 0.594 37 H 0.024 0.976 38 H 0.041 0.959 39 H 0.252 0.748 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.379 0.621 43 H 0.055 0.945 44 H 0.096 0.904 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.067 0.933 48 H 0.074 0.926 49 H 0.096 0.904 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.480 6.374 -7.450 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 H 0.109 0.891 4 C -0.205 4.205 5 C 0.298 3.702 6 O -0.424 6.424 7 N -0.360 5.360 8 C 0.035 3.965 9 H 0.119 0.881 10 C 0.007 3.993 11 N -0.327 5.327 12 C -0.352 4.352 13 H 0.097 0.903 14 C -0.205 4.205 15 N -0.575 5.575 16 Si 0.745 3.255 17 H -0.215 1.215 18 H -0.217 1.217 19 H -0.207 1.207 20 C 0.029 3.971 21 C 0.007 3.993 22 H 0.077 0.923 23 O -0.373 6.373 24 N -0.314 5.314 25 C -0.008 4.008 26 C -0.173 4.173 27 C -0.160 4.160 28 C -0.176 4.176 29 C 0.306 3.694 30 O -0.439 6.439 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.135 0.865 35 H 0.115 0.885 36 H 0.241 0.759 37 H 0.041 0.959 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.227 0.773 43 H 0.074 0.926 44 H 0.114 0.886 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.092 0.908 49 H 0.114 0.886 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.480 6.484 -8.190 21.228 hybrid contribution 1.169 -0.604 0.579 1.437 sum -17.311 5.881 -7.611 19.804 Atomic orbital electron populations 1.22237 0.94439 1.04562 1.01555 1.20765 0.94018 0.96080 0.83401 0.89086 1.22210 0.92588 1.06064 0.99621 1.20637 0.89817 0.78318 0.81401 1.90602 1.70464 1.43225 1.38137 1.45809 1.07600 1.56060 1.26572 1.22282 0.78860 1.00614 0.94771 0.88076 1.21797 0.87306 0.94368 0.95869 1.44280 1.05556 1.70467 1.12442 1.19085 0.86855 1.31339 0.97962 0.90342 1.24786 0.97856 1.01321 0.96524 1.69917 1.25515 1.51371 1.10652 0.86074 0.82692 0.78740 0.78023 1.21545 1.21657 1.20668 1.21844 0.89205 0.97851 0.88173 1.23501 0.93452 0.90669 0.91645 0.92283 1.86259 1.57440 1.63334 1.30281 1.47224 1.49984 1.10987 1.23212 1.21489 0.93563 0.94398 0.91362 1.21853 0.98335 0.97860 0.99298 1.21651 0.99333 0.97637 0.97378 1.21659 1.03175 0.98464 0.94287 1.20080 0.80137 0.81774 0.87398 1.90590 1.37685 1.70829 1.44781 0.89619 0.91927 0.92761 0.86480 0.88512 0.75884 0.95867 0.94022 0.93736 0.92708 0.92965 0.77334 0.92637 0.88579 0.90082 0.90486 0.91452 0.90770 0.88556 0.88378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 9.08 37.16 0.34 -1.34 16 2 C 0.16 1.81 2.20 -67.93 -0.15 1.66 16 3 H 0.09 0.98 7.60 -51.93 -0.39 0.59 16 4 C -0.16 -1.99 5.00 -27.88 -0.14 -2.13 16 5 C 0.51 7.73 7.69 -10.99 -0.08 7.65 16 6 O -0.55 -9.39 12.92 5.56 0.07 -9.32 16 7 N -0.71 -11.10 5.18 -51.73 -0.27 -11.37 16 8 C 0.14 2.62 3.25 -65.78 -0.21 2.41 16 9 H 0.10 2.00 7.64 -51.93 -0.40 1.60 16 10 C 0.13 2.99 6.92 -2.53 -0.02 2.97 16 11 N -0.60 -15.58 3.39 -170.07 -0.58 -16.16 16 12 C -0.22 -6.34 10.28 -15.06 -0.15 -6.50 16 13 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 14 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 15 N -0.93 -26.86 10.31 55.49 0.57 -26.28 16 16 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.15 3.65 5.14 -3.06 -0.02 3.64 16 21 C 0.07 1.22 4.19 -24.90 -0.10 1.12 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 23 O -0.57 -9.23 12.14 -35.23 -0.43 -9.66 16 24 N -0.58 -6.88 2.24 -167.39 -0.37 -7.25 16 25 C 0.11 1.19 5.73 -4.49 -0.03 1.16 16 26 C -0.14 -1.31 6.02 -26.60 -0.16 -1.47 16 27 C -0.12 -1.02 6.04 -26.52 -0.16 -1.18 16 28 C -0.14 -1.40 6.03 -28.11 -0.17 -1.57 16 29 C 0.52 6.68 6.86 -11.88 -0.08 6.60 16 30 O -0.56 -8.52 12.46 5.56 0.07 -8.45 16 31 H 0.09 1.02 5.86 -51.93 -0.30 0.72 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.12 1.61 5.87 -51.93 -0.31 1.31 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.41 5.86 7.56 -40.82 -0.31 5.55 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.05 1.42 7.38 -51.93 -0.38 1.04 16 41 H 0.05 1.35 7.43 -51.93 -0.39 0.96 16 42 H 0.38 4.79 9.12 45.56 0.42 5.21 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.10 1.17 6.25 -51.93 -0.32 0.85 16 45 H 0.08 0.65 8.14 -51.92 -0.42 0.22 16 46 H 0.08 0.93 8.13 -51.93 -0.42 0.51 16 47 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 386.13 15.07 5.82 5.82 Total: -1.00 -33.28 386.13 -8.80 -42.08 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -7.43 Total: 10.75 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: -1.23 Total: 12.68 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.65 Total: -61.06 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.29 Total: -27.43 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.28 -8.80 -42.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219629023.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.535 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds