Wall clock time and date at job start Sat Apr 11 2020 05:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47173 * 2 1 4 4 C 1.53000 * 109.47085 * 120.00052 * 2 1 3 5 5 C 1.50700 * 109.47226 * 185.00176 * 4 2 1 6 6 O 1.21280 * 119.99883 * 359.97438 * 5 4 2 7 7 N 1.34773 * 120.00375 * 180.02562 * 5 4 2 8 8 C 1.46500 * 120.00200 * 180.02562 * 7 5 4 9 9 H 1.09002 * 110.88857 * 34.29247 * 8 7 5 10 10 C 1.54915 * 111.03417 * 270.38731 * 8 7 5 11 11 N 1.47418 * 104.83107 * 204.89999 * 10 8 7 12 12 C 1.36939 * 125.64960 * 204.07747 * 11 10 8 13 13 H 1.08001 * 119.99891 * 0.04058 * 12 11 10 14 14 C 1.38809 * 120.00452 * 180.02562 * 12 11 10 15 15 N 1.31623 * 119.99639 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00533 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47193 * 89.99782 * 16 14 12 18 18 H 1.48496 * 109.47198 * 210.00144 * 16 14 12 19 19 H 1.48500 * 109.46476 * 329.99773 * 16 14 12 20 20 C 1.47029 * 108.70495 * 24.13113 * 11 10 8 21 21 C 1.54327 * 107.26790 * 358.93814 * 20 11 10 22 22 H 1.09004 * 110.71649 * 219.44279 * 21 20 11 23 23 O 1.42898 * 110.86978 * 96.24495 * 21 20 11 24 24 N 1.46497 * 109.47042 * 239.99934 * 2 1 3 25 25 C 1.45752 * 117.95061 * 120.00133 * 24 2 1 26 26 C 1.52913 * 110.49117 * 160.92305 * 25 24 2 27 27 C 1.53341 * 108.67525 * 50.75340 * 26 25 24 28 28 C 1.53071 * 108.42503 * 292.47068 * 27 26 25 29 29 C 1.33356 * 117.94736 * 299.73687 * 24 2 1 30 30 O 1.21282 * 118.24285 * 2.22275 * 29 24 2 31 31 H 1.08997 * 109.47173 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46877 * 300.00180 * 1 2 3 33 33 H 1.08996 * 109.47465 * 60.00043 * 1 2 3 34 34 H 1.09001 * 109.47469 * 64.99777 * 4 2 1 35 35 H 1.08997 * 109.47034 * 304.99480 * 4 2 1 36 36 H 0.97001 * 119.99748 * 359.97438 * 7 5 4 37 37 H 1.08995 * 110.36257 * 323.74273 * 10 8 7 38 38 H 1.08997 * 110.36405 * 86.05992 * 10 8 7 39 39 H 0.97001 * 119.99838 * 179.97438 * 15 14 12 40 40 H 1.08993 * 109.88066 * 239.51797 * 20 11 10 41 41 H 1.08996 * 110.00664 * 118.42784 * 20 11 10 42 42 H 0.96699 * 114.00256 * 66.38577 * 23 21 20 43 43 H 1.09002 * 109.30118 * 281.23902 * 25 24 2 44 44 H 1.09004 * 109.29847 * 40.81454 * 25 24 2 45 45 H 1.09007 * 109.60458 * 170.51266 * 26 25 24 46 46 H 1.09001 * 109.60797 * 290.83242 * 26 25 24 47 47 H 1.09002 * 109.67473 * 52.20223 * 27 26 25 48 48 H 1.08998 * 109.67666 * 172.73315 * 27 26 25 49 49 H 1.09000 * 109.40110 * 169.02685 * 28 27 26 50 50 H 1.08995 * 109.39724 * 288.76707 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3128 6 8 4.1450 -0.0211 0.4441 7 7 4.2150 -1.1805 2.3343 8 6 5.6749 -1.0766 2.3963 9 1 6.0138 -0.1204 1.9975 10 6 6.3485 -2.2579 1.6541 11 7 7.6777 -2.3871 2.2784 12 6 8.7830 -2.9456 1.6940 13 1 8.7228 -3.3378 0.6896 14 6 9.9810 -3.0072 2.3924 15 7 10.0544 -2.5293 3.6166 16 14 11.4891 -3.7683 1.5950 17 1 12.2507 -2.7178 0.8731 18 1 12.3508 -4.3731 2.6423 19 1 11.0643 -4.8193 0.6357 20 6 7.6197 -1.8183 3.6330 21 6 6.1864 -1.2872 3.8459 22 1 6.2019 -0.3431 4.3904 23 8 5.3831 -2.2505 4.5306 24 7 2.0183 -0.6906 -1.1961 25 6 2.8530 0.0602 -2.1256 26 6 3.6412 -0.8916 -3.0261 27 6 2.6684 -1.9063 -3.6389 28 6 2.1401 -2.8069 -2.5196 29 6 1.6757 -1.9685 -1.3637 30 8 0.9460 -2.4797 -0.5408 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.7516 -1.7715 1.2056 35 1 1.6054 -0.2617 2.1369 36 1 3.7326 -1.6557 3.0288 37 1 5.7724 -3.1723 1.7952 38 1 6.4483 -2.0314 0.5926 39 1 10.8915 -2.5727 4.1048 40 1 8.3351 -1.0009 3.7227 41 1 7.8430 -2.5888 4.3709 42 1 5.6612 -2.4186 5.4413 43 1 2.2207 0.6990 -2.7424 44 1 3.5511 0.6801 -1.5629 45 1 4.1273 -0.3251 -3.8205 46 1 4.3944 -1.4138 -2.4360 47 1 1.8378 -1.3803 -4.1096 48 1 3.1886 -2.5110 -4.3817 49 1 1.3079 -3.4019 -2.8959 50 1 2.9359 -3.4715 -2.1836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219629023.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:49 Heat of formation + Delta-G solvation = -117.130284 kcal Electronic energy + Delta-G solvation = -31612.157865 eV Core-core repulsion = 27446.002023 eV Total energy + Delta-G solvation = -4166.155841 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.92974 -40.75469 -39.36048 -37.36809 -36.49162 -36.23753 -35.32826 -33.63400 -32.28800 -30.52654 -30.36728 -29.37246 -28.19974 -26.31708 -25.34630 -24.24454 -22.72172 -22.22023 -21.63005 -21.21857 -19.33242 -19.22438 -18.34522 -18.04820 -17.85219 -17.02826 -16.87838 -16.70502 -16.38581 -16.10220 -15.78040 -15.38631 -15.11966 -15.04874 -14.78513 -14.74245 -14.51895 -14.31776 -14.14075 -13.98993 -13.94421 -13.21372 -13.13484 -13.00199 -12.87164 -12.77659 -12.69843 -12.54317 -12.36632 -12.29554 -12.13004 -11.94353 -11.88470 -11.83486 -11.79895 -11.69071 -10.92233 -10.78944 -10.71899 -10.33581 -10.02523 -9.58448 -8.97641 -7.90773 -5.27051 1.43949 1.45890 1.54536 1.65485 1.71602 2.11249 2.16940 2.47703 3.17284 3.28293 3.56510 3.62612 3.75798 3.86142 3.88892 3.91973 3.93286 3.94632 4.01026 4.23726 4.28462 4.39881 4.48691 4.52773 4.56492 4.60334 4.64600 4.73349 4.78178 4.82587 4.83983 4.95064 4.95289 4.98667 5.03564 5.09598 5.18476 5.33444 5.36060 5.38539 5.43230 5.53181 5.62214 5.69911 6.11991 6.62066 6.64081 6.85376 7.04171 7.23801 7.32369 7.68224 8.32198 9.19119 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013642 B = 0.003265 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.058687 B = 8574.838690 C = 9889.542873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.155 3.845 3 H 0.098 0.902 4 C -0.154 4.154 5 C 0.509 3.491 6 O -0.567 6.567 7 N -0.703 5.703 8 C 0.156 3.844 9 H 0.093 0.907 10 C 0.137 3.863 11 N -0.621 5.621 12 C -0.249 4.249 13 H 0.076 0.924 14 C -0.059 4.059 15 N -0.948 5.948 16 Si 0.980 3.020 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.272 1.272 20 C 0.160 3.840 21 C 0.091 3.909 22 H 0.092 0.908 23 O -0.566 6.566 24 N -0.584 5.584 25 C 0.113 3.887 26 C -0.134 4.134 27 C -0.113 4.113 28 C -0.137 4.137 29 C 0.506 3.494 30 O -0.587 6.587 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.127 0.873 36 H 0.414 0.586 37 H 0.014 0.986 38 H 0.027 0.973 39 H 0.250 0.750 40 H 0.026 0.974 41 H 0.025 0.975 42 H 0.398 0.602 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.100 0.900 46 H 0.044 0.956 47 H 0.084 0.916 48 H 0.089 0.911 49 H 0.108 0.892 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.895 7.170 -8.091 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.051 3.949 3 H 0.116 0.884 4 C -0.194 4.194 5 C 0.297 3.703 6 O -0.446 6.446 7 N -0.355 5.355 8 C 0.049 3.951 9 H 0.111 0.889 10 C 0.010 3.990 11 N -0.348 5.348 12 C -0.378 4.378 13 H 0.093 0.907 14 C -0.252 4.252 15 N -0.596 5.596 16 Si 0.808 3.192 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.197 1.197 20 C 0.035 3.965 21 C 0.030 3.970 22 H 0.109 0.891 23 O -0.374 6.374 24 N -0.314 5.314 25 C -0.009 4.009 26 C -0.172 4.172 27 C -0.150 4.150 28 C -0.177 4.177 29 C 0.296 3.704 30 O -0.470 6.470 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.145 0.855 36 H 0.251 0.749 37 H 0.032 0.968 38 H 0.045 0.955 39 H 0.059 0.941 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.248 0.752 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.118 0.882 46 H 0.063 0.937 47 H 0.102 0.898 48 H 0.107 0.893 49 H 0.126 0.874 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.928 7.290 -8.825 22.982 hybrid contribution 1.606 -0.863 0.778 1.982 sum -18.322 6.427 -8.047 21.018 Atomic orbital electron populations 1.22130 0.93047 1.03534 1.02998 1.20932 0.95055 0.96114 0.82820 0.88414 1.22191 0.89962 1.05661 1.01606 1.21232 0.91063 0.77427 0.80552 1.90608 1.71213 1.44062 1.38752 1.45706 1.06084 1.56430 1.27260 1.21863 0.80542 0.98298 0.94398 0.88918 1.21808 0.86257 0.95551 0.95411 1.44560 1.06212 1.70356 1.13645 1.19407 0.88198 1.31927 0.98265 0.90651 1.25611 1.00511 1.01915 0.97167 1.70116 1.25867 1.51985 1.11639 0.85061 0.78933 0.78030 0.77190 1.21003 1.21571 1.19750 1.21707 0.92354 0.95950 0.86509 1.23151 0.89937 0.91884 0.91983 0.89074 1.86226 1.56511 1.62936 1.31752 1.47358 1.49611 1.10892 1.23554 1.21564 0.93582 0.94459 0.91286 1.21839 0.97921 0.98085 0.99348 1.21622 0.99509 0.97133 0.96763 1.21698 1.03273 0.98482 0.94221 1.20548 0.79899 0.82184 0.87806 1.90574 1.39071 1.71440 1.45909 0.91740 0.89892 0.91937 0.87853 0.85465 0.74862 0.96807 0.95506 0.94091 0.95593 0.95731 0.75154 0.90005 0.90546 0.88152 0.93692 0.89785 0.89274 0.87374 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.08 71.98 0.65 -2.15 16 2 C 0.15 3.23 2.20 44.99 0.10 3.33 16 3 H 0.10 1.92 7.60 -2.39 -0.02 1.91 16 4 C -0.15 -3.49 5.00 29.85 0.15 -3.34 16 5 C 0.51 14.93 7.69 87.66 0.67 15.61 16 6 O -0.57 -19.38 12.92 -3.03 -0.04 -19.42 16 7 N -0.70 -21.25 5.18 -435.96 -2.26 -23.51 16 8 C 0.16 5.77 3.25 46.38 0.15 5.92 16 9 H 0.09 3.65 7.64 -2.39 -0.02 3.63 16 10 C 0.14 6.24 6.92 86.86 0.60 6.84 16 11 N -0.62 -33.12 3.39 -691.99 -2.35 -35.47 16 12 C -0.25 -14.47 10.28 84.03 0.86 -13.60 16 13 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 14 C -0.06 -3.36 5.49 84.86 0.47 -2.90 16 15 N -0.95 -56.11 10.31 21.65 0.22 -55.89 16 16 Si 0.98 46.10 29.55 68.60 2.03 48.13 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 18 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 20 C 0.16 7.73 5.14 86.73 0.45 8.17 16 21 C 0.09 3.20 4.19 31.78 0.13 3.34 16 22 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 23 O -0.57 -17.42 12.14 -148.98 -1.81 -19.23 16 24 N -0.58 -13.23 2.24 -802.68 -1.79 -15.03 16 25 C 0.11 2.23 5.73 86.49 0.50 2.72 16 26 C -0.13 -2.47 6.02 30.68 0.18 -2.28 16 27 C -0.11 -1.68 6.04 30.73 0.19 -1.50 16 28 C -0.14 -2.74 6.03 29.70 0.18 -2.56 16 29 C 0.51 12.85 6.86 87.71 0.60 13.45 16 30 O -0.59 -17.85 12.46 -3.04 -0.04 -17.88 16 31 H 0.06 1.46 5.86 -2.39 -0.01 1.45 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.10 2.76 5.87 -2.39 -0.01 2.75 16 35 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.41 11.23 7.56 -92.71 -0.70 10.53 16 37 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 40 H 0.03 1.38 7.38 -2.39 -0.02 1.37 16 41 H 0.02 1.30 7.43 -2.39 -0.02 1.29 16 42 H 0.40 9.23 9.12 -74.06 -0.68 8.55 16 43 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.08 1.84 6.25 -2.38 -0.01 1.82 16 45 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 46 H 0.04 1.11 8.13 -2.39 -0.02 1.09 16 47 H 0.08 1.02 8.13 -2.39 -0.02 1.00 16 48 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 50 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -74.10 386.13 -0.57 -74.67 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: -0.42 Total: 32.59 kcal Atomic # 6 Polarization: 25.17 SS G_CDS: 5.88 Total: 31.05 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -6.18 Total: -129.90 kcal Atomic # 8 Polarization: -54.65 SS G_CDS: -1.89 Total: -56.54 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -74.10 -0.57 -74.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219629023.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.458 kcal (2) G-P(sol) polarization free energy of solvation -74.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds