Wall clock time and date at job start Sat Apr 11 2020 05:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 114.00099 * 2 1 4 4 H 1.08994 * 109.47454 * 330.00711 * 3 2 1 5 5 C 1.53009 * 109.46972 * 90.00234 * 3 2 1 6 6 C 1.52995 * 109.47343 * 210.00100 * 3 2 1 7 7 C 1.50702 * 109.46931 * 65.00202 * 6 3 2 8 8 O 1.21270 * 120.00212 * 0.02562 * 7 6 3 9 9 N 1.34782 * 119.99755 * 180.02562 * 7 6 3 10 10 C 1.49130 * 134.62981 * 0.81454 * 9 7 6 11 11 C 1.54480 * 85.41968 * 154.38941 * 10 9 7 12 12 H 1.09002 * 114.49494 * 139.27500 * 11 10 9 13 13 C 1.53109 * 111.18827 * 269.53581 * 11 10 9 14 14 C 1.53055 * 109.00818 * 140.41520 * 13 11 10 15 15 N 1.46483 * 108.73173 * 297.16566 * 14 13 11 16 16 C 1.46903 * 110.99831 * 191.10748 * 15 14 13 17 17 C 1.50703 * 109.47060 * 293.95167 * 16 15 14 18 18 O 1.21297 * 119.99804 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99988 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00164 * 180.02562 * 19 17 16 21 21 H 1.08008 * 119.99675 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00336 * 179.97438 * 20 19 17 23 23 N 1.31405 * 119.99922 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99822 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47261 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46812 * 120.00207 * 24 22 20 27 27 H 1.48500 * 109.46911 * 239.99836 * 24 22 20 28 28 C 1.45458 * 112.85472 * 65.77339 * 15 14 13 29 29 C 1.46993 * 134.86107 * 180.02562 * 9 7 6 30 30 H 1.08996 * 111.34283 * 93.56012 * 29 9 7 31 31 H 1.09006 * 109.46959 * 299.99791 * 1 2 3 32 32 H 1.09005 * 109.47495 * 59.99459 * 1 2 3 33 33 H 1.08999 * 109.47200 * 180.02562 * 1 2 3 34 34 H 1.09008 * 109.46731 * 60.00080 * 5 3 2 35 35 H 1.09000 * 109.46625 * 179.97438 * 5 3 2 36 36 H 1.08996 * 109.46766 * 300.00007 * 5 3 2 37 37 H 1.09004 * 109.47221 * 305.00270 * 6 3 2 38 38 H 1.09002 * 109.47700 * 185.00161 * 6 3 2 39 39 H 1.08998 * 114.19782 * 40.31639 * 10 9 7 40 40 H 1.08998 * 113.79856 * 268.41779 * 10 9 7 41 41 H 1.09008 * 109.54582 * 260.27395 * 13 11 10 42 42 H 1.08997 * 109.55073 * 20.55352 * 13 11 10 43 43 H 1.09000 * 109.59161 * 56.93793 * 14 13 11 44 44 H 1.08995 * 109.59335 * 177.23503 * 14 13 11 45 45 H 1.09002 * 109.47194 * 53.94809 * 16 15 14 46 46 H 1.08996 * 109.47184 * 173.95082 * 16 15 14 47 47 H 0.97004 * 120.00281 * 359.97438 * 19 17 16 48 48 H 0.96997 * 120.00348 * 180.02562 * 23 22 20 49 49 H 1.09010 * 108.49560 * 72.50267 * 28 15 14 50 50 H 1.08994 * 108.50305 * 190.11590 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5137 5 6 2.2177 1.7713 1.4426 6 6 3.3588 1.2633 -0.7212 7 6 3.1414 0.9237 -2.1733 8 8 2.0185 0.7346 -2.5903 9 7 4.1952 0.8302 -3.0085 10 6 5.6711 0.9765 -2.8535 11 6 5.7679 0.0450 -4.0820 12 1 6.5364 0.3253 -4.8024 13 6 5.8360 -1.4247 -3.6581 14 6 4.9938 -2.2617 -4.6239 15 7 3.5967 -1.8330 -4.5227 16 6 2.7070 -2.7680 -5.2241 17 6 2.9911 -2.7179 -6.7033 18 8 3.8505 -1.9765 -7.1310 19 7 2.2901 -3.4969 -7.5509 20 6 2.5489 -3.4517 -8.8965 21 1 3.3142 -2.7915 -9.2773 22 6 1.8266 -4.2551 -9.7703 23 7 0.8959 -5.0586 -9.3068 24 14 2.1788 -4.1929 -11.6037 25 1 3.2652 -3.2152 -11.8662 26 1 2.5996 -5.5376 -12.0727 27 1 0.9519 -3.7770 -12.3295 28 6 3.3892 -0.4696 -4.9852 29 6 4.3620 0.5294 -4.4377 30 1 4.3845 1.4409 -5.0349 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 2.8830 1.0773 1.9564 35 1 2.6614 2.7669 1.4425 36 1 1.2569 1.8014 1.9564 37 1 3.9930 0.5051 -0.2618 38 1 3.8427 2.2370 -0.6443 39 1 6.0696 0.5398 -1.9378 40 1 6.0348 1.9873 -3.0381 41 1 6.8711 -1.7652 -3.6877 42 1 5.4444 -1.5311 -2.6465 43 1 5.3493 -2.1114 -5.6433 44 1 5.0750 -3.3161 -4.3602 45 1 2.8790 -3.7792 -4.8552 46 1 1.6695 -2.4870 -5.0437 47 1 1.6030 -4.0900 -7.2088 48 1 0.3919 -5.6198 -9.9167 49 1 3.4740 -0.4564 -6.0719 50 1 2.3791 -0.1625 -4.7146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221430371.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:12 Heat of formation + Delta-G solvation = -70.312149 kcal Electronic energy + Delta-G solvation = -31121.511797 eV Core-core repulsion = 26957.386142 eV Total energy + Delta-G solvation = -4164.125655 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.92008 -39.07510 -38.40986 -37.26858 -35.62255 -33.79654 -32.95122 -31.80291 -31.27904 -29.92808 -28.57781 -27.48948 -26.46519 -25.78683 -23.98454 -23.56045 -21.72848 -21.52182 -19.97244 -19.26170 -18.06323 -17.67156 -16.98272 -16.84151 -16.19071 -15.98206 -15.89533 -15.14539 -15.02001 -14.69227 -14.53986 -14.32688 -13.96158 -13.86949 -13.68887 -13.48539 -13.11636 -13.04855 -12.78690 -12.67901 -12.27544 -12.21970 -12.14146 -11.94486 -11.69356 -11.52609 -11.49215 -11.25222 -11.12180 -11.01053 -10.83587 -10.68715 -10.46047 -10.36083 -10.24987 -10.09242 -9.64178 -9.47377 -9.27609 -9.05988 -8.47205 -7.97380 -7.21819 -6.43049 -3.84498 2.87752 2.91466 3.13990 3.25040 3.31806 3.74667 3.86447 4.15963 4.24674 4.34157 4.53192 4.63062 4.82431 4.95712 5.00418 5.06859 5.11367 5.22097 5.25603 5.26867 5.27213 5.35442 5.39181 5.44961 5.49710 5.50988 5.58840 5.68404 5.75182 5.77451 5.82293 5.84710 5.93767 5.97360 6.10309 6.15436 6.20485 6.25267 6.34333 6.48958 6.64846 6.76458 7.20214 7.52740 7.53115 7.71890 7.93166 8.04040 8.43905 8.58439 9.15048 9.52520 10.02787 10.73467 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016302 B = 0.002735 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.195519 B =10236.091012 C =11309.133151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.373 6.373 3 C 0.101 3.899 4 H 0.066 0.934 5 C -0.174 4.174 6 C -0.134 4.134 7 C 0.541 3.459 8 O -0.528 6.528 9 N -0.639 5.639 10 C 0.099 3.901 11 C -0.114 4.114 12 H 0.093 0.907 13 C -0.093 4.093 14 C 0.047 3.953 15 N -0.509 5.509 16 C 0.048 3.952 17 C 0.408 3.592 18 O -0.595 6.595 19 N -0.557 5.557 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.898 5.898 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.281 1.281 28 C 0.033 3.967 29 C 0.156 3.844 30 H 0.083 0.917 31 H 0.032 0.968 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.393 0.607 48 H 0.272 0.728 49 H 0.085 0.915 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.866 12.119 19.621 24.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.291 6.291 3 C 0.042 3.958 4 H 0.084 0.916 5 C -0.232 4.232 6 C -0.174 4.174 7 C 0.331 3.669 8 O -0.403 6.403 9 N -0.376 5.376 10 C -0.024 4.024 11 C -0.133 4.133 12 H 0.111 0.889 13 C -0.130 4.130 14 C -0.081 4.081 15 N -0.232 5.232 16 C -0.084 4.084 17 C 0.194 3.806 18 O -0.482 6.482 19 N -0.192 5.192 20 C -0.431 4.431 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.539 5.539 24 Si 0.756 3.244 25 H -0.193 1.193 26 H -0.207 1.207 27 H -0.207 1.207 28 C -0.095 4.095 29 C 0.054 3.946 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.103 0.897 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.487 12.231 19.637 24.027 hybrid contribution -0.304 -0.106 -1.524 1.558 sum 6.183 12.125 18.113 22.657 Atomic orbital electron populations 1.22682 0.81071 1.02529 0.99466 1.87917 1.19728 1.26626 1.94875 1.21753 0.93646 0.86063 0.94321 0.91597 1.22305 1.02501 1.01444 0.96933 1.21773 0.98819 1.03688 0.93094 1.19977 0.83375 0.76564 0.87020 1.90678 1.22562 1.49490 1.77606 1.50346 1.06084 1.70427 1.10792 1.23709 0.80096 0.99407 0.99199 1.22947 0.97012 0.96349 0.96964 0.88915 1.21403 0.99313 0.92337 0.99984 1.22026 0.88492 0.97935 0.99627 1.61205 1.05584 1.01479 1.54913 1.21980 0.98302 0.97485 0.90626 1.21171 0.85695 0.84853 0.88882 1.90384 1.36200 1.43030 1.78610 1.42085 1.33490 1.36594 1.07071 1.19753 1.19115 1.22483 0.81706 0.87955 1.25289 0.95882 0.96013 1.00730 1.69619 1.22837 1.25268 1.36182 0.85813 0.78371 0.78121 0.82106 1.19276 1.20718 1.20710 1.21402 0.99162 0.87492 1.01488 1.21833 0.93673 0.97211 0.81932 0.89879 0.94959 0.93545 0.89954 0.91720 0.91696 0.92241 0.88482 0.88442 0.90034 0.89976 0.91524 0.91364 0.91565 0.91627 0.89440 0.89431 0.77360 0.91838 0.89725 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.82 101.05 1.09 1.54 16 2 O -0.37 -5.05 9.58 -49.63 -0.48 -5.52 16 3 C 0.10 1.09 2.27 -26.73 -0.06 1.02 16 4 H 0.07 0.75 7.60 -51.93 -0.39 0.36 16 5 C -0.17 -1.34 9.53 37.16 0.35 -0.99 16 6 C -0.13 -1.37 5.18 -27.88 -0.14 -1.51 16 7 C 0.54 7.78 7.85 -10.98 -0.09 7.70 16 8 O -0.53 -9.70 14.54 -8.84 -0.13 -9.83 16 9 N -0.64 -8.29 3.42 -171.95 -0.59 -8.88 16 10 C 0.10 0.88 8.08 -1.84 -0.01 0.87 16 11 C -0.11 -1.30 4.39 -89.90 -0.39 -1.70 16 12 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 13 C -0.09 -1.16 5.73 -26.65 -0.15 -1.31 16 14 C 0.05 0.77 5.00 -4.02 -0.02 0.75 16 15 N -0.51 -9.17 4.75 -239.61 -1.14 -10.31 16 16 C 0.05 0.92 5.82 -4.97 -0.03 0.89 16 17 C 0.41 9.58 7.14 -10.98 -0.08 9.50 16 18 O -0.59 -15.23 11.39 5.54 0.06 -15.17 16 19 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 20 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 21 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.69 13.05 55.50 0.72 -23.96 16 24 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 C 0.03 0.60 4.70 -6.19 -0.03 0.57 16 29 C 0.16 2.26 4.31 -69.33 -0.30 1.96 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.03 0.29 7.87 -51.93 -0.41 -0.12 16 32 H 0.05 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.60 7.94 -51.93 -0.41 0.19 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 42 H 0.07 0.88 7.70 -51.93 -0.40 0.48 16 43 H 0.07 1.28 6.15 -51.93 -0.32 0.96 16 44 H 0.07 1.04 7.97 -51.93 -0.41 0.63 16 45 H 0.09 1.54 8.00 -51.93 -0.42 1.12 16 46 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 47 H 0.39 9.76 7.90 -40.82 -0.32 9.44 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.09 1.81 5.11 -51.92 -0.27 1.55 16 50 H 0.08 1.68 6.70 -51.93 -0.35 1.33 16 LS Contribution 394.68 15.07 5.95 5.95 Total: -1.00 -33.50 394.68 -9.05 -42.55 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -8.27 Total: 12.09 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: -0.10 Total: 11.28 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -1.06 Total: -57.46 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.54 Total: -30.52 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.50 -9.05 -42.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221430371.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.761 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds