Wall clock time and date at job start Sat Apr 11 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00445 * 2 1 4 4 C 1.50704 * 120.00115 * 180.02562 * 2 1 3 5 5 H 1.09002 * 110.41996 * 127.84680 * 4 2 1 6 6 O 1.44423 * 110.36934 * 5.54178 * 4 2 1 7 7 C 1.44426 * 105.27785 * 200.65562 * 6 4 2 8 8 C 1.54486 * 104.80042 * 40.51052 * 7 6 4 9 9 C 1.54470 * 110.37485 * 250.16116 * 4 2 1 10 10 H 1.09001 * 110.51641 * 261.59323 * 9 4 2 11 11 C 1.50710 * 110.51029 * 24.16374 * 9 4 2 12 12 O 1.21278 * 120.00328 * 64.71285 * 11 9 4 13 13 N 1.34784 * 119.99762 * 244.71303 * 11 9 4 14 14 C 1.46500 * 119.99710 * 179.97438 * 13 11 9 15 15 C 1.53003 * 109.46937 * 180.02562 * 14 13 11 16 16 H 1.09002 * 109.46947 * 295.00080 * 15 14 13 17 17 C 1.52994 * 109.46768 * 174.99995 * 15 14 13 18 18 N 1.46897 * 109.46933 * 54.99948 * 15 14 13 19 19 C 1.46902 * 111.00198 * 204.99660 * 18 15 14 20 20 C 1.50692 * 109.47442 * 179.97438 * 19 18 15 21 21 O 1.21295 * 119.99903 * 0.02562 * 20 19 18 22 22 N 1.34775 * 120.00095 * 179.97438 * 20 19 18 23 23 C 1.37108 * 119.99934 * 180.02562 * 22 20 19 24 24 H 1.07995 * 119.99946 * 0.02562 * 23 22 20 25 25 C 1.38949 * 119.99504 * 180.02562 * 23 22 20 26 26 N 1.31411 * 119.99333 * 180.02562 * 25 23 22 27 27 Si 1.86799 * 120.00438 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.47001 * 89.99830 * 27 25 23 29 29 H 1.48494 * 109.47167 * 209.99848 * 27 25 23 30 30 H 1.48498 * 109.47002 * 329.99822 * 27 25 23 31 31 H 1.08004 * 119.99877 * 359.97438 * 1 2 3 32 32 H 1.07994 * 120.00153 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47607 * 245.09859 * 3 2 1 34 34 H 1.09006 * 109.47206 * 5.10107 * 3 2 1 35 35 H 1.08996 * 109.47516 * 125.09979 * 3 2 1 36 36 H 1.09001 * 110.37376 * 159.33652 * 7 6 4 37 37 H 1.08993 * 110.37114 * 281.68294 * 7 6 4 38 38 H 1.08993 * 110.51114 * 217.37921 * 8 7 6 39 39 H 1.08999 * 110.50815 * 94.66569 * 8 7 6 40 40 H 0.97000 * 119.99717 * 359.97438 * 13 11 9 41 41 H 1.08997 * 109.47039 * 60.00393 * 14 13 11 42 42 H 1.08999 * 109.46896 * 300.00094 * 14 13 11 43 43 H 1.09003 * 109.47551 * 60.00266 * 17 15 14 44 44 H 1.09009 * 109.46911 * 180.02562 * 17 15 14 45 45 H 1.09002 * 109.47456 * 299.99773 * 17 15 14 46 46 H 1.00907 * 111.00510 * 328.95676 * 18 15 14 47 47 H 1.08996 * 109.47314 * 300.00588 * 19 18 15 48 48 H 1.09004 * 109.46323 * 60.00066 * 19 18 15 49 49 H 0.97001 * 120.00072 * 0.02562 * 22 20 19 50 50 H 0.97005 * 120.00023 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 2.7965 -1.3207 -0.8072 6 8 1.1478 -2.4142 -0.1318 7 6 1.8677 -3.5630 0.3662 8 6 2.6263 -3.0453 1.6084 9 6 2.7580 -1.5257 1.3614 10 1 3.8072 -1.2351 1.3068 11 6 2.0528 -0.7516 2.4453 12 8 0.9118 -1.0316 2.7462 13 7 2.6903 0.2520 3.0802 14 6 2.0046 1.0049 4.1334 15 6 2.9433 2.0796 4.6856 16 1 3.7916 1.6034 5.1772 17 6 2.1885 2.9456 5.6961 18 7 3.4258 2.9217 3.5829 19 6 4.7144 3.5418 3.9190 20 6 5.1769 4.3955 2.7665 21 8 4.4994 4.4796 1.7640 22 7 6.3428 5.0664 2.8502 23 6 6.7633 5.8436 1.8019 24 1 6.1600 5.9185 0.9092 25 6 7.9655 6.5349 1.8880 26 7 8.3683 7.2801 0.8834 27 14 9.0093 6.4048 3.4318 28 1 9.9575 5.2702 3.2940 29 1 9.7703 7.6655 3.6224 30 1 8.1297 6.1751 4.6060 31 1 -0.5400 0.9354 0.0004 32 1 -0.5400 -0.9352 -0.0004 33 1 2.6200 1.4034 -0.9322 34 1 1.3588 2.1316 0.0914 35 1 2.7570 1.3242 0.8407 36 1 1.1723 -4.3535 0.6485 37 1 2.5706 -3.9248 -0.3841 38 1 3.6108 -3.5081 1.6750 39 1 2.0511 -3.2366 2.5143 40 1 3.6030 0.4757 2.8398 41 1 1.7165 0.3263 4.9363 42 1 1.1139 1.4782 3.7204 43 1 1.8304 2.3207 6.5143 44 1 2.8571 3.7116 6.0892 45 1 1.3401 3.4218 5.2045 46 1 3.4914 2.3930 2.7260 47 1 4.5984 4.1622 4.8076 48 1 5.4524 2.7634 4.1131 49 1 6.8844 4.9995 3.6521 50 1 9.2078 7.7625 0.9433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480552715.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:12 Heat of formation + Delta-G solvation = -88.829377 kcal Electronic energy + Delta-G solvation = -30682.781811 eV Core-core repulsion = 26517.853189 eV Total energy + Delta-G solvation = -4164.928622 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.91968 -39.02703 -38.42182 -36.99110 -35.08248 -34.19649 -33.79606 -32.58624 -31.73481 -30.98964 -29.02665 -27.11271 -26.95031 -26.26656 -24.02482 -23.64176 -22.31492 -20.76192 -20.42518 -19.47301 -18.82482 -18.39682 -17.49388 -16.89608 -16.30915 -16.05843 -15.84910 -15.57315 -15.48608 -15.37876 -14.89444 -14.56079 -14.14160 -13.92414 -13.73649 -13.33707 -13.23050 -13.03312 -12.94125 -12.74237 -12.70523 -12.26356 -12.23780 -12.20012 -12.06806 -11.89247 -11.84197 -11.60460 -11.44578 -11.35504 -11.24415 -11.00212 -10.96386 -10.64395 -10.12160 -10.02498 -9.82742 -9.62439 -9.28516 -8.93159 -8.65482 -8.29447 -8.22268 -6.35928 -3.87624 2.23398 2.49267 2.94260 2.98104 3.01734 3.11049 3.57863 3.67162 3.94094 4.05593 4.14596 4.37636 4.51065 4.58429 4.71450 4.77134 4.83349 4.97311 5.00839 5.03935 5.15643 5.16258 5.17613 5.32172 5.38792 5.43708 5.46293 5.49748 5.61566 5.65499 5.66756 5.69587 5.77510 5.78831 5.85660 5.88671 6.01591 6.14525 6.19422 6.29096 6.43793 6.69001 6.96032 6.97971 7.27567 7.43740 7.52802 8.09096 8.09474 8.54171 8.89823 9.37062 9.76504 10.77101 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013855 B = 0.002700 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.396718 B =10368.868953 C =11179.856441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.155 4.155 3 C -0.111 4.111 4 C 0.134 3.866 5 H 0.086 0.914 6 O -0.358 6.358 7 C 0.048 3.952 8 C -0.139 4.139 9 C -0.139 4.139 10 H 0.101 0.899 11 C 0.532 3.468 12 O -0.524 6.524 13 N -0.732 5.732 14 C 0.120 3.880 15 C 0.072 3.928 16 H 0.048 0.952 17 C -0.138 4.138 18 N -0.662 5.662 19 C 0.046 3.954 20 C 0.448 3.552 21 O -0.562 6.562 22 N -0.589 5.589 23 C -0.305 4.305 24 H 0.120 0.880 25 C 0.042 3.958 26 N -0.880 5.880 27 Si 0.879 3.121 28 H -0.271 1.271 29 H -0.276 1.276 30 H -0.269 1.269 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.396 0.604 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.348 0.652 47 H 0.089 0.911 48 H 0.044 0.956 49 H 0.370 0.630 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.544 -19.920 6.484 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.155 4.155 3 C -0.168 4.168 4 C 0.076 3.924 5 H 0.104 0.896 6 O -0.276 6.276 7 C -0.029 4.029 8 C -0.177 4.177 9 C -0.161 4.161 10 H 0.119 0.881 11 C 0.318 3.682 12 O -0.399 6.399 13 N -0.386 5.386 14 C -0.004 4.004 15 C -0.039 4.039 16 H 0.066 0.934 17 C -0.196 4.196 18 N -0.298 5.298 19 C -0.087 4.087 20 C 0.234 3.766 21 O -0.444 6.444 22 N -0.229 5.229 23 C -0.434 4.434 24 H 0.138 0.862 25 C -0.161 4.161 26 N -0.520 5.520 27 Si 0.706 3.294 28 H -0.197 1.197 29 H -0.202 1.202 30 H -0.195 1.195 31 H 0.114 0.886 32 H 0.124 0.876 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.231 0.769 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.169 0.831 47 H 0.107 0.893 48 H 0.062 0.938 49 H 0.203 0.797 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.274 -19.360 6.031 22.732 hybrid contribution 2.437 -0.482 1.155 2.740 sum -7.836 -19.842 7.186 22.511 Atomic orbital electron populations 1.23701 0.95274 1.01978 0.97134 1.21489 0.95946 0.93732 1.04316 1.20793 1.00427 0.93281 1.02264 1.21583 0.90543 0.86565 0.93736 0.89635 1.89162 1.37335 1.16681 1.84471 1.23373 0.95741 0.89849 0.93933 1.22920 1.01843 0.92232 1.00677 1.22748 1.01192 0.96679 0.95472 0.88084 1.20043 0.86651 0.79803 0.81704 1.90705 1.17263 1.67084 1.64812 1.46146 1.17721 1.35402 1.39308 1.21572 0.96116 0.92561 0.90140 1.21815 0.96818 0.92213 0.93017 0.93413 1.21736 1.00977 0.99513 0.97409 1.60114 1.28378 1.36491 1.04817 1.21802 0.90086 0.97964 0.98850 1.19675 0.82878 0.84882 0.89212 1.90574 1.55176 1.66239 1.32436 1.42213 1.19689 1.43837 1.17154 1.19428 1.05155 1.22197 0.96631 0.86249 1.25043 0.97067 0.96569 0.97450 1.69621 1.22398 1.29409 1.30575 0.86676 0.81055 0.78844 0.82826 1.19677 1.20152 1.19487 0.88588 0.87569 0.91445 0.91156 0.91793 0.88798 0.92013 0.89763 0.89659 0.76868 0.90951 0.90291 0.92481 0.92059 0.91422 0.83058 0.89262 0.93817 0.79724 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 13.17 29.02 0.38 -1.49 16 2 C -0.15 -1.92 3.75 -101.06 -0.38 -2.30 16 3 C -0.11 -1.39 9.95 36.00 0.36 -1.03 16 4 C 0.13 1.46 3.54 -27.11 -0.10 1.36 16 5 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 6 O -0.36 -4.25 9.82 -35.23 -0.35 -4.59 16 7 C 0.05 0.40 7.63 37.94 0.29 0.69 16 8 C -0.14 -1.12 6.61 -25.16 -0.17 -1.28 16 9 C -0.14 -1.32 3.38 -90.20 -0.31 -1.63 16 10 H 0.10 0.74 7.98 -51.93 -0.41 0.32 16 11 C 0.53 6.24 4.62 -10.98 -0.05 6.19 16 12 O -0.52 -7.93 15.78 5.56 0.09 -7.84 16 13 N -0.73 -7.51 4.06 -60.29 -0.24 -7.76 16 14 C 0.12 1.26 5.31 -4.04 -0.02 1.24 16 15 C 0.07 0.75 2.81 -67.72 -0.19 0.56 16 16 H 0.05 0.45 7.80 -51.93 -0.40 0.05 16 17 C -0.14 -1.36 9.41 37.15 0.35 -1.01 16 18 N -0.66 -9.20 5.93 -108.00 -0.64 -9.84 16 19 C 0.05 0.69 5.97 -4.98 -0.03 0.66 16 20 C 0.45 9.57 7.82 -10.99 -0.09 9.48 16 21 O -0.56 -14.27 15.78 5.54 0.09 -14.19 16 22 N -0.59 -13.41 5.09 -10.96 -0.06 -13.46 16 23 C -0.31 -8.38 10.16 -14.93 -0.15 -8.53 16 24 H 0.12 3.76 7.39 -52.49 -0.39 3.38 16 25 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 26 N -0.88 -25.22 13.96 55.50 0.77 -24.44 16 27 Si 0.88 18.79 27.74 -169.99 -4.72 14.08 16 28 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 29 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 30 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 31 H 0.10 1.18 7.84 -52.48 -0.41 0.76 16 32 H 0.11 1.46 6.90 -52.49 -0.36 1.10 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.93 7.79 -51.93 -0.40 0.53 16 35 H 0.06 0.79 6.21 -51.93 -0.32 0.47 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.80 7.43 -51.93 -0.39 0.41 16 40 H 0.40 3.60 7.16 -40.82 -0.29 3.30 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.62 7.45 -51.92 -0.39 0.23 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.35 4.95 5.99 -39.29 -0.24 4.72 16 47 H 0.09 1.23 7.43 -51.93 -0.39 0.84 16 48 H 0.04 0.55 8.06 -51.93 -0.42 0.13 16 49 H 0.37 7.37 5.76 -40.82 -0.24 7.13 16 50 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 401.31 15.07 6.05 6.05 Total: -1.00 -33.96 401.31 -7.22 -41.18 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: -8.02 Total: 16.88 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -0.19 Total: 3.94 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.17 Total: -55.51 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.17 Total: -26.62 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.72 Total: 14.08 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.96 -7.22 -41.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480552715.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.646 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds