Wall clock time and date at job start Sat Apr 11 2020 05:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00445 * 2 1 4 4 C 1.50704 * 120.00115 * 180.02562 * 2 1 3 5 5 H 1.09002 * 110.41996 * 127.84680 * 4 2 1 6 6 O 1.44423 * 110.36934 * 5.54178 * 4 2 1 7 7 C 1.44426 * 105.27785 * 200.65562 * 6 4 2 8 8 C 1.54486 * 104.80042 * 40.51052 * 7 6 4 9 9 C 1.54470 * 110.37485 * 250.16116 * 4 2 1 10 10 H 1.09001 * 110.51641 * 261.59323 * 9 4 2 11 11 C 1.50710 * 110.51029 * 24.16374 * 9 4 2 12 12 O 1.21278 * 120.00328 * 64.71285 * 11 9 4 13 13 N 1.34784 * 119.99762 * 244.71303 * 11 9 4 14 14 C 1.46500 * 119.99710 * 179.97438 * 13 11 9 15 15 C 1.53003 * 109.46937 * 180.02562 * 14 13 11 16 16 H 1.09002 * 109.46947 * 295.00080 * 15 14 13 17 17 C 1.52994 * 109.46768 * 174.99995 * 15 14 13 18 18 N 1.46897 * 109.46933 * 54.99948 * 15 14 13 19 19 C 1.46902 * 111.00198 * 204.99660 * 18 15 14 20 20 C 1.50692 * 109.47442 * 179.97438 * 19 18 15 21 21 O 1.21295 * 119.99903 * 0.02562 * 20 19 18 22 22 N 1.34775 * 120.00095 * 179.97438 * 20 19 18 23 23 C 1.37108 * 119.99934 * 180.02562 * 22 20 19 24 24 H 1.07995 * 119.99946 * 0.02562 * 23 22 20 25 25 C 1.38949 * 119.99504 * 180.02562 * 23 22 20 26 26 N 1.31411 * 119.99333 * 180.02562 * 25 23 22 27 27 Si 1.86799 * 120.00438 * 0.02562 * 25 23 22 28 28 H 1.48504 * 109.47001 * 89.99830 * 27 25 23 29 29 H 1.48494 * 109.47167 * 209.99848 * 27 25 23 30 30 H 1.48498 * 109.47002 * 329.99822 * 27 25 23 31 31 H 1.08004 * 119.99877 * 359.97438 * 1 2 3 32 32 H 1.07994 * 120.00153 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47607 * 245.09859 * 3 2 1 34 34 H 1.09006 * 109.47206 * 5.10107 * 3 2 1 35 35 H 1.08996 * 109.47516 * 125.09979 * 3 2 1 36 36 H 1.09001 * 110.37376 * 159.33652 * 7 6 4 37 37 H 1.08993 * 110.37114 * 281.68294 * 7 6 4 38 38 H 1.08993 * 110.51114 * 217.37921 * 8 7 6 39 39 H 1.08999 * 110.50815 * 94.66569 * 8 7 6 40 40 H 0.97000 * 119.99717 * 359.97438 * 13 11 9 41 41 H 1.08997 * 109.47039 * 60.00393 * 14 13 11 42 42 H 1.08999 * 109.46896 * 300.00094 * 14 13 11 43 43 H 1.09003 * 109.47551 * 60.00266 * 17 15 14 44 44 H 1.09009 * 109.46911 * 180.02562 * 17 15 14 45 45 H 1.09002 * 109.47456 * 299.99773 * 17 15 14 46 46 H 1.00907 * 111.00510 * 328.95676 * 18 15 14 47 47 H 1.08996 * 109.47314 * 300.00588 * 19 18 15 48 48 H 1.09004 * 109.46323 * 60.00066 * 19 18 15 49 49 H 0.97001 * 120.00072 * 0.02562 * 22 20 19 50 50 H 0.97005 * 120.00023 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 2.7965 -1.3207 -0.8072 6 8 1.1478 -2.4142 -0.1318 7 6 1.8677 -3.5630 0.3662 8 6 2.6263 -3.0453 1.6084 9 6 2.7580 -1.5257 1.3614 10 1 3.8072 -1.2351 1.3068 11 6 2.0528 -0.7516 2.4453 12 8 0.9118 -1.0316 2.7462 13 7 2.6903 0.2520 3.0802 14 6 2.0046 1.0049 4.1334 15 6 2.9433 2.0796 4.6856 16 1 3.7916 1.6034 5.1772 17 6 2.1885 2.9456 5.6961 18 7 3.4258 2.9217 3.5829 19 6 4.7144 3.5418 3.9190 20 6 5.1769 4.3955 2.7665 21 8 4.4994 4.4796 1.7640 22 7 6.3428 5.0664 2.8502 23 6 6.7633 5.8436 1.8019 24 1 6.1600 5.9185 0.9092 25 6 7.9655 6.5349 1.8880 26 7 8.3683 7.2801 0.8834 27 14 9.0093 6.4048 3.4318 28 1 9.9575 5.2702 3.2940 29 1 9.7703 7.6655 3.6224 30 1 8.1297 6.1751 4.6060 31 1 -0.5400 0.9354 0.0004 32 1 -0.5400 -0.9352 -0.0004 33 1 2.6200 1.4034 -0.9322 34 1 1.3588 2.1316 0.0914 35 1 2.7570 1.3242 0.8407 36 1 1.1723 -4.3535 0.6485 37 1 2.5706 -3.9248 -0.3841 38 1 3.6108 -3.5081 1.6750 39 1 2.0511 -3.2366 2.5143 40 1 3.6030 0.4757 2.8398 41 1 1.7165 0.3263 4.9363 42 1 1.1139 1.4782 3.7204 43 1 1.8304 2.3207 6.5143 44 1 2.8571 3.7116 6.0892 45 1 1.3401 3.4218 5.2045 46 1 3.4914 2.3930 2.7260 47 1 4.5984 4.1622 4.8076 48 1 5.4524 2.7634 4.1131 49 1 6.8844 4.9995 3.6521 50 1 9.2078 7.7625 0.9433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480552715.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:10 Heat of formation + Delta-G solvation = -115.963361 kcal Electronic energy + Delta-G solvation = -30683.958429 eV Core-core repulsion = 26517.853189 eV Total energy + Delta-G solvation = -4166.105240 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -41.76078 -40.37040 -39.60004 -38.08070 -36.03798 -35.98201 -34.92809 -33.72279 -33.36570 -32.01142 -29.78156 -28.26309 -28.13020 -27.36271 -25.53238 -24.58522 -23.03048 -21.65931 -21.33465 -21.20063 -20.29496 -19.68364 -18.40268 -17.92348 -17.42058 -17.08330 -16.93535 -16.70585 -16.60523 -16.43634 -16.17719 -15.64642 -15.54223 -14.97427 -14.85577 -14.63167 -14.42839 -14.28947 -14.13720 -14.00645 -13.64081 -13.62431 -13.33535 -13.12181 -13.00678 -12.91281 -12.76729 -12.65258 -12.54650 -12.38745 -12.30077 -12.15438 -11.96862 -11.88275 -11.85011 -11.47905 -10.88214 -10.73245 -10.39057 -10.21954 -10.20271 -9.90236 -9.35077 -8.38793 -5.99384 1.22986 1.32202 1.37176 1.46406 1.59848 1.99200 2.11874 2.25099 2.70863 2.83660 3.18307 3.34634 3.40847 3.62260 3.71453 3.80798 3.98923 4.12573 4.15603 4.19978 4.23233 4.26315 4.34371 4.36832 4.44428 4.53631 4.58558 4.61443 4.64527 4.75436 4.79782 4.83913 4.88190 4.93596 4.98046 5.06314 5.06965 5.12832 5.33359 5.47825 5.55452 5.57499 5.72774 5.92792 6.02879 6.05633 6.36782 6.45079 6.62347 6.91494 7.22761 7.43268 7.99917 8.78856 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013855 B = 0.002700 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.396718 B =10368.868953 C =11179.856441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.150 4.150 3 C -0.108 4.108 4 C 0.128 3.872 5 H 0.104 0.896 6 O -0.386 6.386 7 C 0.041 3.959 8 C -0.132 4.132 9 C -0.138 4.138 10 H 0.129 0.871 11 C 0.529 3.471 12 O -0.563 6.563 13 N -0.724 5.724 14 C 0.125 3.875 15 C 0.080 3.920 16 H 0.075 0.925 17 C -0.138 4.138 18 N -0.683 5.683 19 C 0.059 3.941 20 C 0.448 3.552 21 O -0.610 6.610 22 N -0.591 5.591 23 C -0.325 4.325 24 H 0.056 0.944 25 C -0.016 4.016 26 N -0.936 5.936 27 Si 0.964 3.036 28 H -0.256 1.256 29 H -0.279 1.279 30 H -0.230 1.230 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.068 0.932 40 H 0.405 0.595 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.049 0.951 46 H 0.343 0.657 47 H 0.113 0.887 48 H 0.084 0.916 49 H 0.389 0.611 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.399 -21.954 9.763 24.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.150 4.150 3 C -0.165 4.165 4 C 0.070 3.930 5 H 0.122 0.878 6 O -0.306 6.306 7 C -0.035 4.035 8 C -0.170 4.170 9 C -0.160 4.160 10 H 0.147 0.853 11 C 0.316 3.684 12 O -0.441 6.441 13 N -0.377 5.377 14 C 0.001 3.999 15 C -0.029 4.029 16 H 0.093 0.907 17 C -0.196 4.196 18 N -0.319 5.319 19 C -0.073 4.073 20 C 0.236 3.764 21 O -0.494 6.494 22 N -0.233 5.233 23 C -0.455 4.455 24 H 0.074 0.926 25 C -0.215 4.215 26 N -0.577 5.577 27 Si 0.784 3.216 28 H -0.180 1.180 29 H -0.205 1.205 30 H -0.153 1.153 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.087 0.913 40 H 0.241 0.759 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.164 0.836 47 H 0.131 0.869 48 H 0.102 0.898 49 H 0.225 0.775 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.130 -21.411 9.339 24.734 hybrid contribution 1.635 0.147 0.031 1.642 sum -6.495 -21.264 9.370 24.127 Atomic orbital electron populations 1.23650 0.95797 1.01472 0.98843 1.21656 0.95821 0.94657 1.02889 1.20752 1.00106 0.93000 1.02619 1.21716 0.90523 0.85502 0.95210 0.87845 1.89138 1.38645 1.17863 1.84911 1.23617 0.96246 0.88961 0.94693 1.22928 1.03227 0.91196 0.99668 1.22839 1.02129 0.97438 0.93603 0.85256 1.20484 0.86233 0.79818 0.81857 1.90690 1.19060 1.68292 1.66085 1.46094 1.17971 1.34724 1.38918 1.21494 0.95449 0.92700 0.90276 1.21839 0.97399 0.91683 0.91965 0.90745 1.21754 1.00343 0.99793 0.97723 1.60098 1.28095 1.37830 1.05848 1.21732 0.91413 0.98177 0.95951 1.20968 0.81470 0.83778 0.90153 1.90561 1.56335 1.67428 1.35052 1.42032 1.20701 1.43866 1.16711 1.18993 1.05421 1.24484 0.96557 0.92635 1.26109 0.98165 0.95240 1.01940 1.69811 1.23348 1.30773 1.33789 0.85375 0.78968 0.79037 0.78196 1.18005 1.20484 1.15349 0.88737 0.88526 0.90900 0.92689 0.91536 0.88341 0.89715 0.86562 0.91279 0.75872 0.90024 0.92740 0.90267 0.91846 0.93195 0.83572 0.86940 0.89810 0.77511 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.42 13.17 67.78 0.89 -3.52 16 2 C -0.15 -3.77 3.75 -16.48 -0.06 -3.83 16 3 C -0.11 -2.76 9.95 71.24 0.71 -2.05 16 4 C 0.13 2.66 3.54 30.35 0.11 2.77 16 5 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 6 O -0.39 -8.96 9.82 -148.98 -1.46 -10.42 16 7 C 0.04 0.61 7.63 72.49 0.55 1.17 16 8 C -0.13 -1.82 6.61 31.61 0.21 -1.61 16 9 C -0.14 -2.35 3.38 -10.52 -0.04 -2.39 16 10 H 0.13 1.43 7.98 -2.39 -0.02 1.41 16 11 C 0.53 11.85 4.62 87.66 0.41 12.25 16 12 O -0.56 -17.10 15.78 -3.02 -0.05 -17.15 16 13 N -0.72 -13.58 4.06 -463.04 -1.88 -15.46 16 14 C 0.12 2.43 5.31 86.38 0.46 2.89 16 15 C 0.08 1.43 2.81 44.92 0.13 1.56 16 16 H 0.07 1.01 7.80 -2.39 -0.02 0.99 16 17 C -0.14 -2.33 9.41 71.98 0.68 -1.66 16 18 N -0.68 -17.41 5.93 -495.60 -2.94 -20.34 16 19 C 0.06 1.57 5.97 85.55 0.51 2.08 16 20 C 0.45 18.67 7.82 87.65 0.69 19.36 16 21 O -0.61 -31.67 15.78 -3.08 -0.05 -31.72 16 22 N -0.59 -26.17 5.09 -306.99 -1.56 -27.73 16 23 C -0.33 -18.37 10.16 84.04 0.85 -17.51 16 24 H 0.06 3.77 7.39 -2.91 -0.02 3.74 16 25 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 26 N -0.94 -55.43 13.96 21.66 0.30 -55.13 16 27 Si 0.96 37.24 27.74 68.60 1.90 39.14 16 28 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 29 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 30 H -0.23 -7.37 6.52 99.48 0.65 -6.72 16 31 H 0.09 2.51 7.84 -2.91 -0.02 2.49 16 32 H 0.10 2.83 6.90 -2.91 -0.02 2.81 16 33 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.05 1.54 7.79 -2.38 -0.02 1.53 16 35 H 0.07 1.64 6.21 -2.39 -0.01 1.63 16 36 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 1.20 7.43 -2.39 -0.02 1.18 16 40 H 0.40 6.27 7.16 -92.71 -0.66 5.61 16 41 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.06 1.06 7.45 -2.38 -0.02 1.04 16 45 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.34 9.25 5.99 -89.69 -0.54 8.71 16 47 H 0.11 2.54 7.43 -2.39 -0.02 2.53 16 48 H 0.08 1.63 8.06 -2.39 -0.02 1.61 16 49 H 0.39 14.08 5.76 -92.71 -0.53 13.55 16 50 H 0.28 15.07 8.31 -92.70 -0.77 14.30 16 Total: -1.00 -80.85 401.31 0.00 -80.85 By element: Atomic # 1 Polarization: 49.69 SS G_CDS: -0.83 Total: 48.86 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 6.56 Total: 9.10 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -6.08 Total: -118.66 kcal Atomic # 8 Polarization: -57.73 SS G_CDS: -1.56 Total: -59.29 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 1.90 Total: 39.14 kcal Total: -80.85 0.00 -80.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480552715.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.116 kcal (2) G-P(sol) polarization free energy of solvation -80.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds