Wall clock time and date at job start Sat Apr 11 2020 05:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46603 * 2 1 4 4 C 1.50700 * 109.47293 * 119.99703 * 2 1 3 5 5 O 1.21287 * 119.99546 * 120.00091 * 4 2 1 6 6 N 1.34771 * 120.00010 * 300.00570 * 4 2 1 7 7 C 1.46507 * 119.99594 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46710 * 176.96409 * 7 6 4 9 9 N 1.46497 * 109.55088 * 54.81659 * 8 7 6 10 10 C 1.36944 * 119.99453 * 61.86732 * 9 8 7 11 11 H 1.08002 * 119.99989 * 354.89727 * 10 9 8 12 12 C 1.38809 * 119.99691 * 174.90765 * 10 9 8 13 13 N 1.31619 * 120.00069 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 120.00263 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.47152 * 270.00663 * 14 12 10 16 16 H 1.48505 * 109.46846 * 30.00806 * 14 12 10 17 17 H 1.48495 * 109.46828 * 150.00408 * 14 12 10 18 18 C 1.53177 * 109.54293 * 175.00129 * 8 7 6 19 19 C 1.53287 * 109.06578 * 176.85034 * 18 8 7 20 20 O 1.42903 * 109.45805 * 302.44061 * 19 18 8 21 21 C 1.42908 * 114.09710 * 61.15727 * 20 19 18 22 22 C 1.53090 * 109.41725 * 298.84212 * 21 20 19 23 23 C 1.52997 * 109.47162 * 240.00518 * 2 1 3 24 24 H 1.09003 * 110.21572 * 185.70117 * 23 2 1 25 25 C 1.54477 * 110.25126 * 63.76528 * 23 2 1 26 26 C 1.54622 * 101.76658 * 215.58387 * 25 23 2 27 27 C 1.51284 * 104.19675 * 24.80056 * 26 25 23 28 28 O 1.21274 * 124.94383 * 163.77214 * 27 26 25 29 29 N 1.34558 * 110.13699 * 343.67261 * 27 26 25 30 30 H 1.09004 * 109.47572 * 59.99791 * 1 2 3 31 31 H 1.09004 * 109.47339 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47492 * 299.99743 * 1 2 3 33 33 H 0.96999 * 120.00279 * 359.97438 * 6 4 2 34 34 H 1.08995 * 109.47228 * 56.96594 * 7 6 4 35 35 H 1.08997 * 109.46876 * 296.95852 * 7 6 4 36 36 H 0.96995 * 120.00491 * 241.87375 * 9 8 7 37 37 H 0.97001 * 120.00529 * 179.97438 * 13 12 10 38 38 H 1.09008 * 109.51622 * 296.83382 * 18 8 7 39 39 H 1.08998 * 109.52588 * 57.02535 * 18 8 7 40 40 H 1.08998 * 109.45500 * 182.44516 * 19 18 8 41 41 H 1.08995 * 109.46463 * 62.44481 * 19 18 8 42 42 H 1.08995 * 109.47979 * 178.85820 * 21 20 19 43 43 H 1.09004 * 109.48850 * 58.82958 * 21 20 19 44 44 H 1.08996 * 109.52121 * 297.70361 * 22 21 20 45 45 H 1.08993 * 109.57630 * 177.54569 * 22 21 20 46 46 H 1.09004 * 110.96753 * 333.70737 * 25 23 2 47 47 H 1.08999 * 110.96729 * 97.46822 * 25 23 2 48 48 H 1.09004 * 110.48490 * 143.47572 * 26 25 23 49 49 H 1.09001 * 110.49115 * 266.12157 * 26 25 23 50 50 H 0.96998 * 124.43464 * 179.64600 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7297 -1.6964 1.1191 6 7 1.7067 -0.2499 2.4545 7 6 2.1956 -0.9402 3.6507 8 6 1.7487 -0.1763 4.8988 9 7 0.2941 -0.0047 4.8739 10 6 -0.5250 -1.1021 4.8871 11 1 -0.1003 -2.0936 4.8327 12 6 -1.9011 -0.9400 4.9703 13 7 -2.6884 -1.9947 4.9836 14 14 -2.6356 0.7749 5.0650 15 1 -2.7507 1.1863 6.4872 16 1 -1.7573 1.7301 4.3428 17 1 -3.9827 0.7715 4.4400 18 6 2.1509 -0.9610 6.1513 19 6 1.7689 -0.1498 7.3945 20 8 2.4079 1.1275 7.3443 21 6 2.0335 1.9233 6.2180 22 6 2.4262 1.1973 4.9287 23 6 2.0400 -0.7211 -1.2493 24 1 3.1251 -0.8170 -1.2122 25 6 1.6142 0.0460 -2.5207 26 6 1.3450 -1.1103 -3.5113 27 6 1.0202 -2.2914 -2.6235 28 8 0.4824 -3.3128 -2.9953 29 7 1.4167 -2.0451 -1.3614 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.1493 0.5389 2.5436 34 1 3.2842 -0.9870 3.6238 35 1 1.7889 -1.9511 3.6785 36 1 -0.0889 0.8860 4.8479 37 1 -3.6500 -1.8816 5.0421 38 1 1.6297 -1.9184 6.1642 39 1 3.2274 -1.1313 6.1444 40 1 2.0915 -0.6827 8.2890 41 1 0.6878 -0.0145 7.4220 42 1 2.5465 2.8839 6.2650 43 1 0.9557 2.0859 6.2298 44 1 3.5083 1.0705 4.8972 45 1 2.1027 1.7818 4.0674 46 1 0.7084 0.6253 -2.3418 47 1 2.4206 0.6862 -2.8784 48 1 0.4977 -0.8722 -4.1544 49 1 2.2331 -1.3153 -4.1091 50 1 1.3045 -2.6617 -0.6211 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484188459.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:19 Heat of formation + Delta-G solvation = -110.984701 kcal Electronic energy + Delta-G solvation = -31648.670446 eV Core-core repulsion = 27482.781097 eV Total energy + Delta-G solvation = -4165.889349 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.82395 -39.74968 -38.89804 -36.77396 -35.95245 -33.76256 -32.88541 -32.08587 -31.34445 -30.81419 -29.92451 -27.35437 -26.87113 -24.44995 -23.91414 -23.10845 -22.22905 -21.13462 -20.60815 -19.70831 -18.66008 -17.95224 -17.10435 -16.99123 -16.69092 -15.81422 -15.69139 -15.53503 -15.26740 -14.76766 -14.66465 -14.52317 -14.28753 -13.83841 -13.82531 -13.58240 -13.36678 -13.26588 -12.80702 -12.77391 -12.52011 -12.44123 -12.21295 -12.01982 -11.95816 -11.71142 -11.49404 -11.29186 -11.09296 -11.07910 -11.04691 -10.98594 -10.48883 -10.17897 -9.94471 -9.86039 -9.72386 -9.53768 -9.34344 -9.05967 -8.94990 -8.62864 -7.48881 -5.91493 -3.30958 2.61913 2.84230 3.16882 3.24195 3.32258 3.41167 3.43872 4.19160 4.20421 4.24053 4.41806 4.48574 4.74284 4.87920 4.90370 4.97267 5.01110 5.02867 5.11661 5.24664 5.28605 5.37406 5.41674 5.46787 5.48774 5.52804 5.55935 5.71091 5.79351 5.80235 5.88460 5.89839 5.93976 6.07465 6.11614 6.19783 6.21433 6.38191 6.44591 6.56484 6.63151 6.80290 6.86916 7.12894 7.54054 7.79711 7.84189 8.25713 8.29616 8.47990 9.01275 9.73022 9.90734 11.25964 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012478 B = 0.003615 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.378289 B = 7743.847202 C = 8819.444127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 H 0.108 0.892 4 C 0.512 3.488 5 O -0.552 6.552 6 N -0.698 5.698 7 C 0.119 3.881 8 C 0.195 3.805 9 N -0.739 5.739 10 C -0.244 4.244 11 H 0.092 0.908 12 C 0.013 3.987 13 N -0.926 5.926 14 Si 0.879 3.121 15 H -0.284 1.284 16 H -0.280 1.280 17 H -0.292 1.292 18 C -0.152 4.152 19 C 0.069 3.931 20 O -0.391 6.391 21 C 0.066 3.934 22 C -0.154 4.154 23 C 0.152 3.848 24 H 0.089 0.911 25 C -0.133 4.133 26 C -0.155 4.155 27 C 0.515 3.485 28 O -0.542 6.542 29 N -0.712 5.712 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.400 0.600 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.100 0.900 49 H 0.102 0.898 50 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.232 11.271 -8.958 18.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 H 0.125 0.875 4 C 0.297 3.703 5 O -0.431 6.431 6 N -0.348 5.348 7 C -0.007 4.007 8 C 0.104 3.896 9 N -0.383 5.383 10 C -0.373 4.373 11 H 0.110 0.890 12 C -0.183 4.183 13 N -0.573 5.573 14 Si 0.709 3.291 15 H -0.211 1.211 16 H -0.207 1.207 17 H -0.218 1.218 18 C -0.192 4.192 19 C -0.008 4.008 20 O -0.310 6.310 21 C -0.011 4.011 22 C -0.192 4.192 23 C 0.046 3.954 24 H 0.107 0.893 25 C -0.171 4.171 26 C -0.195 4.195 27 C 0.301 3.699 28 O -0.419 6.419 29 N -0.368 5.368 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.235 0.765 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.195 0.805 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.118 0.882 49 H 0.121 0.879 50 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 11.466 9.922 -9.135 17.701 hybrid contribution -1.263 1.206 0.319 1.775 sum 10.203 11.127 -8.816 17.482 Atomic orbital electron populations 1.21809 0.91974 1.03790 1.02794 1.21667 0.98648 1.00946 0.93055 0.87450 1.20397 0.80334 0.84778 0.84747 1.90684 1.39043 1.26499 1.86919 1.45733 1.52105 1.31706 1.05214 1.21799 0.97120 0.97392 0.84419 1.19788 0.85016 0.92471 0.92327 1.42890 0.99829 1.05602 1.89984 1.18885 0.87569 0.87434 1.43416 0.89047 1.24651 0.95995 0.96023 1.01669 1.69683 1.03605 1.27524 1.56445 0.86687 0.78905 0.85565 0.77927 1.21071 1.20661 1.21799 1.22467 1.00157 1.00845 0.95703 1.22514 0.98050 0.82943 0.97269 1.87827 1.68943 1.29019 1.45194 1.22443 0.99556 0.93551 0.85580 1.22401 1.01194 0.97177 0.98478 1.21422 0.98044 0.82444 0.93518 0.89330 1.22798 1.03402 0.97282 0.93596 1.22333 1.04502 0.94166 0.98537 1.20894 0.77169 0.88172 0.83671 1.90751 1.43463 1.30022 1.77694 1.46350 1.60251 1.19089 1.11093 0.91499 0.91488 0.91301 0.76502 0.92528 0.91113 0.80496 0.92924 0.89783 0.92344 0.89931 0.91601 0.89779 0.93156 0.90694 0.91341 0.89304 0.89068 0.88160 0.87940 0.74253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.66 37.16 0.32 -1.31 16 2 C -0.12 -1.24 2.59 -91.77 -0.24 -1.47 16 3 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.51 7.29 6.97 -10.99 -0.08 7.22 16 5 O -0.55 -9.61 14.95 5.55 0.08 -9.52 16 6 N -0.70 -10.11 5.02 -60.29 -0.30 -10.41 16 7 C 0.12 1.91 4.37 -4.04 -0.02 1.89 16 8 C 0.20 3.09 0.41 -131.63 -0.05 3.04 16 9 N -0.74 -14.11 3.42 -47.06 -0.16 -14.27 16 10 C -0.24 -5.87 9.16 -15.06 -0.14 -6.01 16 11 H 0.09 2.47 7.00 -52.49 -0.37 2.10 16 12 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 13 N -0.93 -27.13 13.97 55.49 0.78 -26.36 16 14 Si 0.88 19.97 27.79 -169.99 -4.72 15.24 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -5.72 6.45 56.52 0.36 -5.36 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 C -0.15 -2.43 4.80 -26.49 -0.13 -2.56 16 19 C 0.07 1.10 6.68 37.31 0.25 1.35 16 20 O -0.39 -6.14 10.77 -35.23 -0.38 -6.52 16 21 C 0.07 0.90 6.67 37.20 0.25 1.15 16 22 C -0.15 -2.01 4.80 -26.59 -0.13 -2.14 16 23 C 0.15 1.49 2.72 -67.01 -0.18 1.31 16 24 H 0.09 0.89 7.95 -51.93 -0.41 0.48 16 25 C -0.13 -0.89 6.53 -25.10 -0.16 -1.06 16 26 C -0.16 -1.32 6.86 -26.74 -0.18 -1.50 16 27 C 0.52 7.02 8.43 -10.80 -0.09 6.93 16 28 O -0.54 -9.89 18.03 5.56 0.10 -9.79 16 29 N -0.71 -9.25 4.59 -52.73 -0.24 -9.49 16 30 H 0.07 0.59 6.30 -51.93 -0.33 0.26 16 31 H 0.07 0.93 7.46 -51.93 -0.39 0.54 16 32 H 0.07 0.82 7.56 -51.93 -0.39 0.42 16 33 H 0.40 5.43 6.83 -40.82 -0.28 5.15 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.37 7.46 -51.93 -0.39 0.99 16 36 H 0.36 6.87 4.63 -40.82 -0.19 6.68 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.08 1.51 7.20 -51.92 -0.37 1.14 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.07 1.21 7.75 -51.93 -0.40 0.81 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.74 7.14 -51.93 -0.37 0.37 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.07 0.79 7.36 -51.93 -0.38 0.41 16 46 H 0.09 0.54 6.04 -51.93 -0.31 0.23 16 47 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.42 6.34 8.00 -40.82 -0.33 6.02 16 LS Contribution 384.61 15.07 5.80 5.80 Total: -1.00 -32.43 384.61 -7.62 -40.04 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: -7.89 Total: 18.18 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -0.68 Total: 7.10 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 0.07 Total: -60.53 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.20 Total: -25.84 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.72 Total: 15.24 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.43 -7.62 -40.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484188459.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.940 kcal (2) G-P(sol) polarization free energy of solvation -32.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds