Wall clock time and date at job start Sat Apr 11 2020 05:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46898 * 2 1 4 4 C 1.50704 * 109.46993 * 240.00297 * 2 1 3 5 5 O 1.21275 * 119.99938 * 239.99820 * 4 2 1 6 6 N 1.34772 * 119.99940 * 59.99821 * 4 2 1 7 7 C 1.46495 * 120.00156 * 179.97438 * 6 4 2 8 8 C 1.52999 * 109.47541 * 176.64960 * 7 6 4 9 9 N 1.46497 * 109.54365 * 54.84866 * 8 7 6 10 10 C 1.36936 * 119.99751 * 62.20645 * 9 8 7 11 11 H 1.07993 * 119.99954 * 354.06358 * 10 9 8 12 12 C 1.38811 * 119.99675 * 174.06725 * 10 9 8 13 13 N 1.31622 * 120.00035 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00034 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47480 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47108 * 299.99755 * 14 12 10 17 17 H 1.48506 * 109.47031 * 59.99686 * 14 12 10 18 18 C 1.53178 * 109.54688 * 175.03102 * 8 7 6 19 19 C 1.53280 * 109.06498 * 176.85128 * 18 8 7 20 20 O 1.42908 * 109.46201 * 302.44110 * 19 18 8 21 21 C 1.42902 * 114.09224 * 61.15415 * 20 19 18 22 22 C 1.53086 * 109.42218 * 298.84228 * 21 20 19 23 23 C 1.52998 * 109.46868 * 120.00411 * 2 1 3 24 24 H 1.08998 * 110.21852 * 59.52589 * 23 2 1 25 25 C 1.54483 * 110.24641 * 297.49902 * 23 2 1 26 26 C 1.54630 * 101.76618 * 266.41930 * 25 23 2 27 27 C 1.51286 * 104.19738 * 335.20444 * 26 25 23 28 28 O 1.21276 * 124.94735 * 196.23541 * 27 26 25 29 29 N 1.34421 * 110.11228 * 16.24760 * 27 26 25 30 30 H 1.08998 * 109.47270 * 59.99892 * 1 2 3 31 31 H 1.08997 * 109.46898 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46818 * 299.99499 * 1 2 3 33 33 H 0.97002 * 120.00182 * 0.02562 * 6 4 2 34 34 H 1.08998 * 109.47423 * 56.64553 * 7 6 4 35 35 H 1.09001 * 109.47271 * 296.64793 * 7 6 4 36 36 H 0.97004 * 119.99657 * 242.20373 * 9 8 7 37 37 H 0.97006 * 119.99600 * 180.02562 * 13 12 10 38 38 H 1.09007 * 109.51745 * 296.83970 * 18 8 7 39 39 H 1.09004 * 109.52145 * 57.02569 * 18 8 7 40 40 H 1.09002 * 109.45519 * 182.44650 * 19 18 8 41 41 H 1.08999 * 109.46536 * 62.44524 * 19 18 8 42 42 H 1.09007 * 109.47879 * 178.85820 * 21 20 19 43 43 H 1.09002 * 109.49139 * 58.83592 * 21 20 19 44 44 H 1.08994 * 109.52529 * 297.70819 * 22 21 20 45 45 H 1.09002 * 109.57735 * 177.54448 * 22 21 20 46 46 H 1.08999 * 110.96682 * 24.53565 * 25 23 2 47 47 H 1.08998 * 110.96736 * 148.30464 * 25 23 2 48 48 H 1.08992 * 110.48730 * 216.52704 * 26 25 23 49 49 H 1.08997 * 110.60096 * 93.93438 * 26 25 23 50 50 H 0.97002 * 124.34893 * 180.38328 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 2.1954 -0.9400 -3.6508 8 6 1.6177 -0.2692 -4.8986 9 7 1.9339 1.1611 -4.8770 10 6 3.2393 1.5741 -4.9012 11 1 4.0365 0.8482 -4.8395 12 6 3.5377 2.9257 -5.0051 13 7 2.5660 3.8103 -5.0808 14 14 5.3184 3.4893 -5.0375 15 1 5.3673 4.9689 -5.1536 16 1 5.9937 3.0682 -3.7837 17 1 6.0097 2.8787 -6.2013 18 6 2.2235 -0.9091 -6.1515 19 6 1.5797 -0.2840 -7.3942 20 8 0.1635 -0.4676 -7.3401 21 6 -0.4622 0.1496 -6.2133 22 6 0.0976 -0.4577 -4.9243 23 6 2.0400 -0.7213 1.2492 24 1 1.6765 -1.7488 1.2657 25 6 1.5872 0.0284 2.5217 26 6 2.8021 0.9445 2.7971 27 6 3.9625 0.2291 2.1409 28 8 5.1331 0.4612 2.3564 29 7 3.5071 -0.7011 1.2840 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.1493 0.5390 -2.5435 34 1 1.8825 -1.9837 -3.6215 35 1 3.2838 -0.8878 -3.6812 36 1 1.2185 1.8155 -4.8455 37 1 2.7746 4.7549 -5.1538 38 1 3.2989 -0.7316 -6.1674 39 1 2.0305 -1.9819 -6.1422 40 1 1.9747 -0.7654 -8.2888 41 1 1.8072 0.7816 -7.4241 42 1 -1.5382 -0.0193 -6.2572 43 1 -0.2616 1.2209 -6.2274 44 1 -0.1381 -1.5212 -4.8903 45 1 -0.3459 0.0415 -4.0627 46 1 0.6904 0.6173 2.3292 47 1 1.4269 -0.6654 3.3470 48 1 2.9712 1.0418 3.8694 49 1 2.6535 1.9249 2.3447 50 1 4.0751 -1.2838 0.7561 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484188461.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:24 Heat of formation + Delta-G solvation = -116.686408 kcal Electronic energy + Delta-G solvation = -31639.779885 eV Core-core repulsion = 27473.643291 eV Total energy + Delta-G solvation = -4166.136593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.80271 -39.61572 -38.79026 -36.73053 -35.80193 -33.75501 -32.96949 -32.05482 -31.26952 -30.67812 -29.22889 -27.23154 -26.65513 -24.58495 -24.10114 -23.06640 -22.21734 -21.03190 -20.46083 -19.73966 -18.66657 -17.60052 -17.35877 -16.98419 -16.14026 -15.75206 -15.53549 -15.46021 -15.35230 -14.73078 -14.53330 -14.33930 -14.01722 -13.83917 -13.71063 -13.56701 -13.50380 -13.15386 -12.95651 -12.72317 -12.48613 -12.15705 -12.09280 -11.98129 -11.80756 -11.66152 -11.47384 -11.39220 -11.01315 -10.94711 -10.92365 -10.83408 -10.42109 -10.08122 -9.83750 -9.80720 -9.76062 -9.50262 -9.25766 -9.06912 -8.82658 -8.55990 -7.16244 -5.92599 -3.23392 2.63262 2.91968 3.36565 3.41622 3.43114 3.44033 3.49194 4.25755 4.31925 4.34587 4.43002 4.47510 4.78824 4.84003 5.02938 5.07569 5.11247 5.19256 5.24882 5.31519 5.41091 5.44638 5.47448 5.50381 5.52988 5.60401 5.64621 5.72652 5.73823 5.85193 5.95627 5.98851 6.03344 6.06020 6.16522 6.26520 6.37376 6.49068 6.51723 6.68165 6.74262 6.85131 6.94060 7.15766 7.59392 7.68368 7.92002 8.24636 8.32067 8.55382 9.37568 9.87005 10.23667 11.28798 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010372 B = 0.003973 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.846026 B = 7045.067569 C = 8666.774474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 H 0.102 0.898 4 C 0.517 3.483 5 O -0.559 6.559 6 N -0.696 5.696 7 C 0.118 3.882 8 C 0.189 3.811 9 N -0.712 5.712 10 C -0.238 4.238 11 H 0.069 0.931 12 C -0.003 4.003 13 N -0.930 5.930 14 Si 0.900 3.100 15 H -0.291 1.291 16 H -0.286 1.286 17 H -0.285 1.285 18 C -0.152 4.152 19 C 0.070 3.930 20 O -0.393 6.393 21 C 0.066 3.934 22 C -0.149 4.149 23 C 0.153 3.847 24 H 0.094 0.906 25 C -0.131 4.131 26 C -0.159 4.159 27 C 0.514 3.486 28 O -0.541 6.541 29 N -0.714 5.714 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.403 0.597 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.100 0.900 49 H 0.104 0.896 50 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.360 -7.979 9.592 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 H 0.120 0.880 4 C 0.302 3.698 5 O -0.439 6.439 6 N -0.346 5.346 7 C -0.009 4.009 8 C 0.097 3.903 9 N -0.354 5.354 10 C -0.369 4.369 11 H 0.087 0.913 12 C -0.200 4.200 13 N -0.577 5.577 14 Si 0.731 3.269 15 H -0.217 1.217 16 H -0.213 1.213 17 H -0.212 1.212 18 C -0.192 4.192 19 C -0.007 4.007 20 O -0.312 6.312 21 C -0.011 4.011 22 C -0.188 4.188 23 C 0.046 3.954 24 H 0.112 0.888 25 C -0.169 4.169 26 C -0.199 4.199 27 C 0.300 3.700 28 O -0.419 6.419 29 N -0.369 5.369 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.239 0.761 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.114 0.886 47 H 0.104 0.896 48 H 0.118 0.882 49 H 0.123 0.877 50 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -9.232 -8.530 9.659 15.852 hybrid contribution 1.036 0.972 -0.220 1.437 sum -8.196 -7.559 9.438 14.608 Atomic orbital electron populations 1.21812 0.92141 1.02949 1.03247 1.21812 0.97965 1.01711 0.93531 0.88016 1.20307 0.80295 0.84438 0.84711 1.90607 1.39000 1.27282 1.86998 1.45748 1.52345 1.31405 1.05063 1.21817 0.99637 0.94436 0.84984 1.19834 0.91698 0.87045 0.91754 1.42465 1.05767 0.98925 1.88263 1.18991 0.83982 0.90997 1.42930 0.91323 1.24680 0.97035 0.95997 1.02296 1.69629 1.30223 1.01099 1.56744 0.86380 0.84947 0.77545 0.78007 1.21693 1.21253 1.21190 1.22483 1.01786 0.98581 0.96376 1.22484 0.79833 1.01560 0.96791 1.87799 1.21140 1.76755 1.45510 1.22459 0.96123 0.97303 0.85241 1.22337 0.96367 1.01432 0.98633 1.21375 0.80507 1.00368 0.93114 0.88785 1.22761 0.98430 0.98780 0.96931 1.22364 0.94047 1.00412 1.03063 1.20940 0.89678 0.79921 0.79481 1.90748 1.18996 1.66991 1.65143 1.46359 1.07888 1.38706 1.43976 0.91400 0.91805 0.91021 0.76130 0.92777 0.91767 0.78106 0.93376 0.90463 0.92701 0.90400 0.91213 0.90104 0.92190 0.91291 0.91367 0.88561 0.89636 0.88173 0.87733 0.74080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.88 37.16 0.33 -0.78 16 2 C -0.13 -1.38 2.49 -91.77 -0.23 -1.61 16 3 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.52 7.70 7.01 -10.99 -0.08 7.62 16 5 O -0.56 -9.83 14.65 5.56 0.08 -9.75 16 6 N -0.70 -10.67 5.02 -60.30 -0.30 -10.98 16 7 C 0.12 1.98 4.37 -4.04 -0.02 1.96 16 8 C 0.19 3.17 0.41 -131.63 -0.05 3.11 16 9 N -0.71 -14.61 3.61 -47.06 -0.17 -14.78 16 10 C -0.24 -5.78 8.67 -15.06 -0.13 -5.91 16 11 H 0.07 1.70 6.78 -52.49 -0.36 1.35 16 12 C 0.00 -0.09 5.50 -17.43 -0.10 -0.19 16 13 N -0.93 -25.44 13.07 55.49 0.73 -24.71 16 14 Si 0.90 21.62 29.55 -169.99 -5.02 16.60 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 C -0.15 -2.55 4.80 -26.49 -0.13 -2.68 16 19 C 0.07 1.19 6.68 37.30 0.25 1.44 16 20 O -0.39 -6.65 10.77 -35.23 -0.38 -7.03 16 21 C 0.07 0.99 6.67 37.20 0.25 1.23 16 22 C -0.15 -2.12 4.80 -26.59 -0.13 -2.25 16 23 C 0.15 1.53 2.56 -67.01 -0.17 1.36 16 24 H 0.09 0.91 8.12 -51.93 -0.42 0.49 16 25 C -0.13 -0.91 6.53 -25.10 -0.16 -1.08 16 26 C -0.16 -1.48 6.86 -26.74 -0.18 -1.66 16 27 C 0.51 7.36 8.43 -10.86 -0.09 7.27 16 28 O -0.54 -10.27 18.03 5.56 0.10 -10.17 16 29 N -0.71 -9.47 5.34 -52.76 -0.28 -9.75 16 30 H 0.07 0.54 7.56 -51.93 -0.39 0.15 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.39 6.24 -51.93 -0.32 0.07 16 33 H 0.40 5.99 6.84 -40.82 -0.28 5.71 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.26 7.46 -51.93 -0.39 0.88 16 36 H 0.38 8.46 6.81 -40.82 -0.28 8.19 16 37 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.08 1.40 7.19 -51.92 -0.37 1.03 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.07 1.39 7.75 -51.93 -0.40 0.99 16 42 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 43 H 0.06 1.01 7.14 -51.93 -0.37 0.64 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.07 0.88 7.37 -51.93 -0.38 0.50 16 46 H 0.10 0.48 5.97 -51.93 -0.31 0.17 16 47 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.42 6.25 7.84 -40.82 -0.32 5.93 16 LS Contribution 388.83 15.07 5.86 5.86 Total: -1.00 -31.42 388.83 -7.99 -39.42 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: -7.96 Total: 17.43 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -0.64 Total: 7.86 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.03 Total: -60.22 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.20 Total: -26.94 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.42 -7.99 -39.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484188461.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.270 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds