Wall clock time and date at job start Sat Apr 11 2020 05:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46602 * 2 1 4 4 N 1.46490 * 109.46973 * 239.99824 * 2 1 3 5 5 C 1.34781 * 120.00153 * 85.00666 * 4 2 1 6 6 O 1.21359 * 119.99871 * 359.97438 * 5 4 2 7 7 C 1.49089 * 120.00039 * 179.72286 * 5 4 2 8 8 O 1.20785 * 119.99945 * 0.27378 * 7 5 4 9 9 C 1.50693 * 120.00094 * 180.26868 * 7 5 4 10 10 C 1.53000 * 109.47334 * 179.97438 * 9 7 5 11 11 C 1.52998 * 109.47280 * 300.00198 * 9 7 5 12 12 C 1.53005 * 109.46866 * 60.00133 * 9 7 5 13 13 C 1.52999 * 109.46938 * 119.99728 * 2 1 3 14 14 C 1.53935 * 113.73342 * 281.73499 * 13 2 1 15 15 N 1.47962 * 86.17749 * 221.92140 * 14 13 2 16 16 C 1.46897 * 111.00421 * 137.58285 * 15 14 13 17 17 C 1.50705 * 109.47319 * 90.63651 * 16 15 14 18 18 O 1.21287 * 119.99761 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00062 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00015 * 179.97438 * 19 17 16 21 21 H 1.07993 * 120.00194 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99947 * 179.97438 * 20 19 17 23 23 N 1.31414 * 120.00185 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00027 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47110 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47190 * 120.00118 * 24 22 20 27 27 H 1.48499 * 109.47236 * 240.00038 * 24 22 20 28 28 C 1.47960 * 90.76278 * 24.68842 * 15 14 13 29 29 H 1.08994 * 109.47326 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47223 * 300.05406 * 1 2 3 31 31 H 1.09000 * 109.46634 * 60.05030 * 1 2 3 32 32 H 0.97000 * 120.00113 * 264.99643 * 4 2 1 33 33 H 1.08998 * 109.47303 * 60.00194 * 10 9 7 34 34 H 1.09001 * 109.47065 * 180.02562 * 10 9 7 35 35 H 1.08999 * 109.47172 * 299.99998 * 10 9 7 36 36 H 1.09005 * 109.47323 * 59.99922 * 11 9 7 37 37 H 1.09001 * 109.47209 * 179.97438 * 11 9 7 38 38 H 1.08997 * 109.47581 * 299.99485 * 11 9 7 39 39 H 1.08999 * 109.47445 * 60.00121 * 12 9 7 40 40 H 1.09001 * 109.47206 * 180.02562 * 12 9 7 41 41 H 1.09005 * 109.47139 * 299.99711 * 12 9 7 42 42 H 1.08998 * 112.93780 * 53.43436 * 13 2 1 43 43 H 1.09002 * 113.76279 * 336.23169 * 14 13 2 44 44 H 1.08996 * 113.76283 * 107.60405 * 14 13 2 45 45 H 1.08992 * 109.47347 * 210.63930 * 16 15 14 46 46 H 1.09005 * 109.47182 * 330.63836 * 16 15 14 47 47 H 0.97004 * 119.99868 * 0.02562 * 19 17 16 48 48 H 0.97001 * 119.99986 * 179.97438 * 23 22 20 49 49 H 1.09003 * 113.75436 * 220.99111 * 28 15 14 50 50 H 1.08998 * 113.85931 * 89.64353 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1472 -0.0183 -2.3571 6 8 1.8583 1.1592 -2.4117 7 6 2.6500 -0.7196 -3.5728 8 8 2.9372 -1.8916 -3.5186 9 6 2.7998 0.0336 -4.8694 10 6 3.3300 -0.9112 -5.9498 11 6 1.4392 0.5868 -5.2980 12 6 3.7829 1.1900 -4.6767 13 6 2.0400 -0.7212 1.2493 14 6 1.9763 0.1339 2.5277 15 7 3.3109 -0.4201 2.8460 16 6 4.2039 0.6237 3.3664 17 6 4.0863 0.6828 4.8677 18 8 3.3331 -0.0708 5.4471 19 7 4.8181 1.5731 5.5664 20 6 4.7108 1.6273 6.9321 21 1 4.0395 0.9568 7.4480 22 6 5.4657 2.5448 7.6524 23 7 6.2829 3.3604 7.0248 24 14 5.3200 2.6181 9.5133 25 1 4.3405 1.6013 9.9736 26 1 6.6446 2.3411 10.1249 27 1 4.8596 3.9698 9.9209 28 6 3.5700 -0.6728 1.4114 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5147 0.8895 31 1 -0.3632 0.5131 -0.8905 32 1 2.2491 -1.6318 -1.1525 33 1 2.6301 -1.7353 -6.0872 34 1 3.4388 -0.3662 -6.8875 35 1 4.2994 -1.3049 -5.6442 36 1 1.0619 1.2601 -4.5282 37 1 1.5477 1.1320 -6.2356 38 1 0.7389 -0.2370 -5.4353 39 1 4.7522 0.7959 -4.3714 40 1 3.8909 1.7352 -5.6144 41 1 3.4055 1.8633 -3.9069 42 1 1.6178 -1.7193 1.3657 43 1 1.9803 1.2074 2.3387 44 1 1.1957 -0.1738 3.2234 45 1 5.2327 0.3919 3.0914 46 1 3.9226 1.5874 2.9417 47 1 5.4203 2.1761 5.1029 48 1 6.8096 4.0011 7.5277 49 1 4.0627 -1.6251 1.2153 50 1 4.0402 0.1636 0.8943 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485494461.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:29 Heat of formation + Delta-G solvation = -78.188076 kcal Electronic energy + Delta-G solvation = -29596.448767 eV Core-core repulsion = 25431.981587 eV Total energy + Delta-G solvation = -4164.467181 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.33942 -40.24552 -38.89957 -37.76687 -36.55235 -35.34442 -33.86503 -31.73374 -31.17552 -29.54103 -27.88134 -27.73087 -26.52610 -25.86131 -25.73415 -24.13728 -22.44021 -21.10930 -20.24042 -19.34662 -19.01018 -17.91883 -17.74931 -16.97204 -16.20934 -16.08671 -15.81282 -15.54443 -15.44921 -14.81714 -14.76151 -14.55028 -14.21737 -14.01467 -13.77029 -13.71463 -13.34016 -13.04772 -12.92370 -12.75500 -12.62291 -12.60578 -12.57659 -12.34635 -12.09324 -12.01265 -11.86091 -11.56455 -11.41848 -11.34240 -11.17594 -11.10409 -10.96899 -10.86173 -10.62098 -10.33073 -10.20168 -9.64580 -9.51920 -9.49194 -8.72536 -8.16097 -7.94007 -6.39808 -3.80473 0.59922 2.33089 2.63347 3.17401 3.27663 3.35064 3.69341 3.87812 3.94426 4.11858 4.22087 4.31785 4.38796 4.40712 4.47494 4.82886 4.89079 5.01012 5.05171 5.14022 5.15748 5.20499 5.23421 5.34991 5.37562 5.39639 5.40513 5.43653 5.44491 5.51328 5.61577 5.67113 5.67837 5.68625 5.73441 5.80291 5.84633 5.89091 5.94645 6.06701 6.20496 6.28926 6.44512 6.57610 7.03197 7.16400 7.57172 7.61653 8.08442 8.64349 9.20627 9.57038 10.09427 10.78184 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.001901 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.680033 B =14727.363522 C =15196.659520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.093 0.907 4 N -0.697 5.697 5 C 0.476 3.524 6 O -0.504 6.504 7 C 0.360 3.640 8 O -0.417 6.417 9 C -0.095 4.095 10 C -0.137 4.137 11 C -0.144 4.144 12 C -0.145 4.145 13 C -0.128 4.128 14 C 0.024 3.976 15 N -0.448 5.448 16 C 0.010 3.990 17 C 0.447 3.553 18 O -0.575 6.575 19 N -0.568 5.568 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.020 3.980 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.004 3.996 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.409 0.591 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.058 0.942 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.088 0.912 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.648 -5.077 -26.870 28.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.111 0.889 4 N -0.350 5.350 5 C 0.258 3.742 6 O -0.379 6.379 7 C 0.230 3.770 8 O -0.286 6.286 9 C -0.097 4.097 10 C -0.194 4.194 11 C -0.201 4.201 12 C -0.202 4.202 13 C -0.147 4.147 14 C -0.105 4.105 15 N -0.170 5.170 16 C -0.122 4.122 17 C 0.232 3.768 18 O -0.459 6.459 19 N -0.205 5.205 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.125 4.125 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.245 0.755 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.125 0.875 43 H 0.088 0.912 44 H 0.113 0.887 45 H 0.105 0.895 46 H 0.076 0.924 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.107 0.893 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.999 -5.765 -25.890 27.704 hybrid contribution 0.612 0.814 0.217 1.041 sum -7.387 -4.951 -25.673 27.170 Atomic orbital electron populations 1.22142 0.94391 1.02528 1.02951 1.21221 0.94700 0.97268 0.82572 0.88863 1.46086 1.64848 1.14864 1.09244 1.20908 0.80079 0.87961 0.85233 1.90727 1.47807 1.14989 1.84413 1.25011 0.73270 0.88270 0.90493 1.90422 1.34741 1.17417 1.86036 1.20964 0.99088 0.97250 0.92356 1.21791 1.01710 0.98605 0.97284 1.21911 0.93669 1.01521 1.02976 1.21922 0.97619 0.96802 1.03833 1.23370 0.96630 1.01135 0.93583 1.23922 0.94717 0.97355 0.94535 1.68383 1.01809 1.33511 1.13253 1.22487 0.98702 0.94412 0.96636 1.19682 0.85035 0.84321 0.87781 1.90518 1.41061 1.43553 1.70719 1.41888 1.38521 1.32645 1.07456 1.19743 1.23265 1.18073 0.81564 0.87907 1.25260 0.96161 0.96014 1.00653 1.69622 1.26517 1.21778 1.36558 0.85803 0.78138 0.78120 0.82302 1.19234 1.20777 1.20791 1.23987 0.95437 1.02237 0.90888 0.92159 0.90790 0.92092 0.75524 0.91989 0.91381 0.91910 0.90113 0.91106 0.92572 0.92439 0.91092 0.90085 0.87514 0.91159 0.88651 0.89474 0.92425 0.77573 0.91976 0.89334 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.44 37.16 0.35 -1.02 16 2 C 0.15 1.35 2.29 -67.93 -0.16 1.19 16 3 H 0.09 0.99 7.48 -51.93 -0.39 0.60 16 4 N -0.70 -6.02 4.94 -54.36 -0.27 -6.29 16 5 C 0.48 4.58 7.52 -11.75 -0.09 4.49 16 6 O -0.50 -5.76 13.05 5.49 0.07 -5.69 16 7 C 0.36 3.18 6.03 -29.81 -0.18 3.00 16 8 O -0.42 -4.22 16.09 5.98 0.10 -4.12 16 9 C -0.10 -0.68 0.76 -155.66 -0.12 -0.80 16 10 C -0.14 -0.85 7.76 37.16 0.29 -0.56 16 11 C -0.14 -0.92 8.29 37.16 0.31 -0.61 16 12 C -0.14 -0.99 8.29 37.16 0.31 -0.68 16 13 C -0.13 -1.31 3.35 -89.69 -0.30 -1.61 16 14 C 0.02 0.33 7.41 -2.77 -0.02 0.31 16 15 N -0.45 -7.28 5.65 -239.76 -1.35 -8.64 16 16 C 0.01 0.17 5.28 -4.98 -0.03 0.15 16 17 C 0.45 10.76 7.83 -10.98 -0.09 10.67 16 18 O -0.58 -15.99 16.01 5.55 0.09 -15.90 16 19 N -0.57 -14.62 5.29 -10.97 -0.06 -14.68 16 20 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 21 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 22 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.82 13.05 55.50 0.72 -24.10 16 24 Si 0.93 21.27 29.55 -169.99 -5.02 16.24 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 C 0.00 0.04 7.38 -2.77 -0.02 0.02 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.41 3.10 8.07 -40.82 -0.33 2.77 16 33 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 36 H 0.08 0.63 6.43 -51.93 -0.33 0.30 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.67 6.43 -51.93 -0.33 0.34 16 42 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 0.91 7.36 -51.93 -0.38 0.53 16 44 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 46 H 0.06 0.93 7.38 -51.93 -0.38 0.54 16 47 H 0.39 9.62 7.90 -40.82 -0.32 9.29 16 48 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 LS Contribution 409.93 15.07 6.18 6.18 Total: -1.00 -33.07 409.93 -7.83 -40.90 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -8.30 Total: 9.61 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 0.02 Total: 6.48 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.96 Total: -53.70 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: 0.26 Total: -25.71 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.07 -7.83 -40.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485494461.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.284 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds