Wall clock time and date at job start Sat Apr 11 2020 05:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.72131 * 4 2 1 6 6 O 1.21373 * 120.00280 * 0.28141 * 5 4 2 7 7 C 1.49091 * 120.00000 * 180.27623 * 5 4 2 8 8 O 1.20773 * 120.00106 * 0.02562 * 7 5 4 9 9 C 1.50701 * 119.99951 * 179.97438 * 7 5 4 10 10 C 1.52996 * 109.46972 * 179.97438 * 9 7 5 11 11 C 1.52996 * 109.47651 * 300.00698 * 9 7 5 12 12 C 1.53004 * 109.46666 * 60.00509 * 9 7 5 13 13 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 14 14 C 1.53940 * 113.73430 * 156.72587 * 13 2 1 15 15 N 1.47958 * 86.17907 * 221.92621 * 14 13 2 16 16 C 1.46898 * 111.00273 * 137.58707 * 15 14 13 17 17 C 1.50702 * 109.47586 * 90.63011 * 16 15 14 18 18 O 1.21292 * 119.99899 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00241 * 179.97438 * 17 16 15 20 20 C 1.37091 * 120.00044 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00180 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00051 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99644 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00058 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47149 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47100 * 119.99977 * 24 22 20 27 27 H 1.48498 * 109.47081 * 240.00005 * 24 22 20 28 28 C 1.47954 * 90.76851 * 24.68825 * 15 14 13 29 29 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 30 30 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 32 32 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 33 33 H 1.09006 * 109.46938 * 60.00809 * 10 9 7 34 34 H 1.09005 * 109.47129 * 180.02562 * 10 9 7 35 35 H 1.08994 * 109.47515 * 300.00217 * 10 9 7 36 36 H 1.08998 * 109.47324 * 59.99224 * 11 9 7 37 37 H 1.08996 * 109.47694 * 179.97438 * 11 9 7 38 38 H 1.09007 * 109.46906 * 300.00162 * 11 9 7 39 39 H 1.08994 * 109.47496 * 59.99982 * 12 9 7 40 40 H 1.09005 * 109.46605 * 179.97438 * 12 9 7 41 41 H 1.09004 * 109.46970 * 299.99460 * 12 9 7 42 42 H 1.08992 * 112.93960 * 288.43333 * 13 2 1 43 43 H 1.09005 * 113.75646 * 336.23833 * 14 13 2 44 44 H 1.08994 * 113.75915 * 107.60376 * 14 13 2 45 45 H 1.08999 * 109.47568 * 210.63485 * 16 15 14 46 46 H 1.09003 * 109.46944 * 330.63378 * 16 15 14 47 47 H 0.96999 * 119.99788 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99303 * 179.97438 * 23 22 20 49 49 H 1.09005 * 113.76130 * 220.99493 * 28 15 14 50 50 H 1.08998 * 113.75941 * 89.62836 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8636 1.1607 2.4103 7 6 2.6551 -0.7182 3.5715 8 8 2.9427 -1.8899 3.5172 9 6 2.8055 0.0353 4.8679 10 6 3.3344 -0.9098 5.9486 11 6 3.7888 1.1914 4.6749 12 6 1.4451 0.5890 5.2967 13 6 2.0400 -0.7213 -1.2492 14 6 3.4670 -0.3154 -1.6598 15 7 2.9604 -0.3146 -3.0500 16 6 3.4681 0.8453 -3.7947 17 6 4.7626 0.4790 -4.4739 18 8 5.2173 -0.6387 -4.3501 19 7 5.4146 1.3929 -5.2196 20 6 6.5919 1.0594 -5.8378 21 1 6.9967 0.0643 -5.7276 22 6 7.2643 2.0018 -6.6063 23 7 6.7720 3.2129 -6.7400 24 14 8.8681 1.5472 -7.4493 25 1 9.2045 0.1334 -7.1439 26 1 8.7204 1.7143 -8.9174 27 1 9.9542 2.4323 -6.9571 28 6 1.5822 -0.0739 -2.5687 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.2491 -1.6318 1.1526 33 1 4.3035 -1.3046 5.6434 34 1 3.4428 -0.3649 6.8865 35 1 2.6335 -1.7331 6.0861 36 1 3.4116 1.8645 3.9050 37 1 3.8972 1.7367 5.6124 38 1 4.7579 0.7969 4.3694 39 1 0.7446 -0.2346 5.4343 40 1 1.5538 1.1336 6.2346 41 1 1.0679 1.2622 4.5268 42 1 1.8823 -1.7991 -1.2115 43 1 3.7640 0.6698 -1.3002 44 1 4.2152 -1.0838 -1.4655 45 1 2.7361 1.1443 -4.5450 46 1 3.6407 1.6722 -3.1058 47 1 5.0508 2.2866 -5.3189 48 1 7.2416 3.8708 -7.2761 49 1 0.8244 -0.6494 -3.1005 50 1 1.3279 0.9819 -2.4748 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485494462.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:32 Heat of formation + Delta-G solvation = -77.885636 kcal Electronic energy + Delta-G solvation = -29629.642577 eV Core-core repulsion = 25465.188511 eV Total energy + Delta-G solvation = -4164.454066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.30354 -40.24781 -38.87927 -37.76673 -36.52624 -35.32848 -33.86530 -31.73655 -31.17387 -29.49821 -27.84944 -27.69613 -26.62028 -25.89768 -25.58760 -24.14014 -22.46454 -21.09829 -20.25889 -19.32584 -18.94281 -17.90553 -17.70228 -16.99576 -16.18587 -16.06766 -15.93951 -15.47053 -15.22392 -14.93688 -14.67237 -14.59272 -14.24681 -14.03187 -13.75110 -13.66202 -13.30293 -13.11243 -12.89437 -12.75919 -12.59930 -12.57339 -12.56009 -12.37314 -12.05071 -11.96194 -11.81860 -11.60654 -11.38472 -11.38162 -11.14910 -11.08401 -11.02850 -10.70764 -10.68593 -10.32997 -10.20108 -9.61403 -9.50442 -9.48873 -8.71761 -8.15920 -7.93870 -6.39758 -3.80303 0.63680 2.36396 2.66600 3.17480 3.27712 3.35188 3.72401 3.88414 3.94607 4.14786 4.22595 4.30315 4.42018 4.44326 4.46891 4.86466 4.91065 4.96750 5.08601 5.14340 5.17234 5.21795 5.24158 5.33473 5.38140 5.40090 5.43421 5.44377 5.48167 5.54380 5.59165 5.66887 5.68257 5.71904 5.73839 5.82487 5.86243 5.88499 5.96764 6.04351 6.22431 6.29109 6.48143 6.58013 7.05594 7.16889 7.57303 7.64202 8.08587 8.64562 9.20821 9.57181 10.09675 10.78273 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015414 B = 0.002073 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.149922 B =13503.589606 C =14394.470820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.094 0.906 4 N -0.698 5.698 5 C 0.476 3.524 6 O -0.505 6.505 7 C 0.360 3.640 8 O -0.417 6.417 9 C -0.095 4.095 10 C -0.137 4.137 11 C -0.145 4.145 12 C -0.143 4.143 13 C -0.127 4.127 14 C 0.017 3.983 15 N -0.449 5.449 16 C 0.010 3.990 17 C 0.446 3.554 18 O -0.576 6.576 19 N -0.568 5.568 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.020 3.980 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.011 3.989 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.410 0.590 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.106 0.894 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.058 0.942 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.092 0.908 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.333 -3.084 23.001 27.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.112 0.888 4 N -0.351 5.351 5 C 0.259 3.741 6 O -0.380 6.380 7 C 0.229 3.771 8 O -0.285 6.285 9 C -0.096 4.096 10 C -0.194 4.194 11 C -0.202 4.202 12 C -0.200 4.200 13 C -0.147 4.147 14 C -0.112 4.112 15 N -0.170 5.170 16 C -0.122 4.122 17 C 0.231 3.769 18 O -0.459 6.459 19 N -0.205 5.205 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.118 4.118 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.245 0.755 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.124 0.876 43 H 0.086 0.914 44 H 0.110 0.890 45 H 0.106 0.894 46 H 0.076 0.924 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.110 0.890 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.839 -4.029 22.514 26.733 hybrid contribution 0.601 0.822 -0.244 1.047 sum -13.238 -3.207 22.270 26.105 Atomic orbital electron populations 1.22142 0.94457 1.02526 1.02850 1.21222 0.94546 0.97351 0.82672 0.88846 1.46101 1.64811 1.14822 1.09327 1.20914 0.79995 0.87943 0.85258 1.90724 1.47897 1.14977 1.84432 1.25003 0.73316 0.88281 0.90481 1.90422 1.34663 1.17447 1.86008 1.20964 0.99073 0.97259 0.92349 1.21793 1.01758 0.98588 0.97263 1.21921 0.97686 0.96794 1.03805 1.21911 0.93689 1.01497 1.02943 1.23349 0.97172 1.01339 0.92796 1.24005 0.96172 1.01581 0.89464 1.68375 1.01833 1.36093 1.10745 1.22486 0.98087 0.92668 0.98993 1.19694 0.86555 0.86381 0.84222 1.90521 1.68756 1.21451 1.65145 1.41885 1.21782 1.12988 1.43864 1.19740 0.98040 0.99422 1.25423 0.87935 1.25258 0.99876 0.95015 0.97931 1.69623 1.40165 1.03804 1.40888 0.85807 0.81092 0.78799 0.78692 1.19239 1.20764 1.20784 1.23964 0.94322 0.99926 0.93637 0.90919 0.92141 0.92082 0.75460 0.91870 0.91385 0.92005 0.90087 0.91095 0.92380 0.92599 0.91119 0.90134 0.87600 0.91367 0.89041 0.89373 0.92443 0.77567 0.91980 0.88976 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.29 37.16 0.35 -0.93 16 2 C 0.15 1.35 2.42 -67.93 -0.16 1.18 16 3 H 0.09 1.00 7.37 -51.93 -0.38 0.62 16 4 N -0.70 -6.42 5.07 -54.36 -0.28 -6.69 16 5 C 0.48 4.86 7.52 -11.75 -0.09 4.77 16 6 O -0.50 -5.96 13.05 5.48 0.07 -5.89 16 7 C 0.36 3.42 6.03 -29.80 -0.18 3.24 16 8 O -0.42 -4.53 16.09 5.99 0.10 -4.43 16 9 C -0.09 -0.73 0.76 -155.66 -0.12 -0.85 16 10 C -0.14 -0.93 7.76 37.16 0.29 -0.64 16 11 C -0.14 -1.09 8.29 37.16 0.31 -0.78 16 12 C -0.14 -0.96 8.29 37.16 0.31 -0.65 16 13 C -0.13 -1.31 3.49 -89.68 -0.31 -1.62 16 14 C 0.02 0.24 7.51 -2.76 -0.02 0.21 16 15 N -0.45 -7.28 5.65 -239.74 -1.35 -8.63 16 16 C 0.01 0.17 5.28 -4.98 -0.03 0.15 16 17 C 0.45 10.79 7.83 -10.98 -0.09 10.71 16 18 O -0.58 -16.11 16.01 5.55 0.09 -16.02 16 19 N -0.57 -14.66 5.29 -10.96 -0.06 -14.71 16 20 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 21 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 22 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.85 13.05 55.50 0.72 -24.12 16 24 Si 0.93 21.33 29.55 -169.99 -5.02 16.30 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 C 0.01 0.12 6.57 -2.77 -0.02 0.11 16 29 H 0.07 0.51 7.43 -51.93 -0.39 0.13 16 30 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.41 3.39 8.07 -40.82 -0.33 3.06 16 33 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 36 H 0.08 0.72 6.43 -51.93 -0.33 0.39 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.65 6.43 -51.93 -0.33 0.31 16 42 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.07 0.95 7.29 -51.93 -0.38 0.57 16 44 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 46 H 0.06 0.92 7.38 -51.93 -0.38 0.54 16 47 H 0.39 9.62 7.90 -40.82 -0.32 9.29 16 48 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 49 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.07 0.71 7.85 -51.93 -0.41 0.30 16 LS Contribution 408.58 15.07 6.16 6.16 Total: -1.00 -33.40 408.58 -7.84 -41.24 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -8.26 Total: 10.01 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -0.01 Total: 6.80 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.96 Total: -54.16 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: 0.26 Total: -26.34 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.40 -7.84 -41.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485494462.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.649 kcal (2) G-P(sol) polarization free energy of solvation -33.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds