Wall clock time and date at job start Sat Apr 11 2020 05:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47265 * 2 1 4 4 N 1.46503 * 109.46792 * 240.00190 * 2 1 3 5 5 C 1.34771 * 120.00072 * 84.99889 * 4 2 1 6 6 O 1.21285 * 120.00036 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00048 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47354 * 179.97438 * 7 5 4 9 9 H 1.09004 * 110.74615 * 57.02411 * 8 7 5 10 10 C 1.55301 * 110.85016 * 180.71933 * 8 7 5 11 11 C 1.54948 * 100.94292 * 152.32759 * 10 8 7 12 12 O 1.43647 * 105.13189 * 323.55397 * 11 10 8 13 13 C 1.43232 * 109.97280 * 24.43046 * 12 11 10 14 14 C 1.53005 * 109.47117 * 120.00002 * 2 1 3 15 15 C 1.53928 * 113.73367 * 281.72600 * 14 2 1 16 16 N 1.47959 * 86.18282 * 221.92191 * 15 14 2 17 17 C 1.46896 * 111.00178 * 137.58444 * 16 15 14 18 18 C 1.50694 * 109.47012 * 90.64010 * 17 16 15 19 19 O 1.21290 * 120.00521 * 0.02562 * 18 17 16 20 20 N 1.34778 * 119.99942 * 180.02562 * 18 17 16 21 21 C 1.37098 * 120.00114 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00335 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00027 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99776 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99854 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46949 * 90.00420 * 25 23 21 27 27 H 1.48495 * 109.47117 * 210.00325 * 25 23 21 28 28 H 1.48496 * 109.47185 * 330.00380 * 25 23 21 29 29 C 1.47964 * 90.75933 * 24.69020 * 16 15 14 30 30 H 1.08998 * 109.47327 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47009 * 300.04808 * 1 2 3 32 32 H 1.08996 * 109.47317 * 60.04688 * 1 2 3 33 33 H 0.97001 * 119.99420 * 264.99826 * 4 2 1 34 34 H 1.09005 * 109.46544 * 60.00381 * 7 5 4 35 35 H 1.08995 * 109.47751 * 300.00898 * 7 5 4 36 36 H 1.09003 * 111.12653 * 270.24613 * 10 8 7 37 37 H 1.09003 * 111.12349 * 34.40590 * 10 8 7 38 38 H 1.09005 * 110.30490 * 204.63983 * 11 10 8 39 39 H 1.08999 * 110.39152 * 82.51331 * 11 10 8 40 40 H 1.08995 * 109.82980 * 238.77395 * 13 12 11 41 41 H 1.09000 * 109.83098 * 117.79840 * 13 12 11 42 42 H 1.09000 * 112.93564 * 53.43667 * 14 2 1 43 43 H 1.08997 * 113.76157 * 336.24265 * 15 14 2 44 44 H 1.09002 * 113.75640 * 107.60429 * 15 14 2 45 45 H 1.09000 * 109.47512 * 210.64484 * 17 16 15 46 46 H 1.09006 * 109.46994 * 330.64438 * 17 16 15 47 47 H 0.97005 * 120.00272 * 0.02562 * 20 18 17 48 48 H 0.97002 * 119.99370 * 179.97438 * 24 23 21 49 49 H 1.08997 * 113.75721 * 220.99259 * 29 16 15 50 50 H 1.09002 * 113.75809 * 89.63033 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8590 1.1587 -2.4115 7 6 2.6498 -0.7285 -3.5875 8 6 2.7005 0.2544 -4.7589 9 1 3.3264 1.1130 -4.5157 10 6 3.1982 -0.4500 -6.0504 11 6 2.5094 0.4108 -7.1391 12 8 1.2276 0.7551 -6.5896 13 6 1.2795 0.7062 -5.1590 14 6 2.0401 -0.7213 1.2493 15 6 1.9766 0.1338 2.5277 16 7 3.3111 -0.4203 2.8459 17 6 4.2041 0.6235 3.3663 18 6 4.0866 0.6826 4.8675 19 8 3.3334 -0.0710 5.4470 20 7 4.8185 1.5729 5.5662 21 6 4.7112 1.6270 6.9319 22 1 4.0405 0.9560 7.4480 23 6 5.4661 2.5446 7.6523 24 7 6.2825 3.3608 7.0244 25 14 5.3205 2.6178 9.5132 26 1 6.3126 1.6969 10.1239 27 1 5.5818 4.0044 9.9759 28 1 3.9514 2.2102 9.9189 29 6 3.5701 -0.6730 1.4112 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5146 0.8895 32 1 -0.3634 0.5131 -0.8904 33 1 2.2490 -1.6318 -1.1526 34 1 1.9774 -1.5508 -3.8325 35 1 3.6490 -1.1205 -3.3981 36 1 4.2836 -0.3950 -6.1345 37 1 2.8548 -1.4837 -6.0913 38 1 2.3855 -0.1664 -8.0555 39 1 3.0911 1.3114 -7.3356 40 1 0.5457 -0.0086 -4.7867 41 1 1.0763 1.6949 -4.7476 42 1 1.6179 -1.7194 1.3656 43 1 1.9804 1.2072 2.3387 44 1 1.1960 -0.1739 3.2234 45 1 5.2330 0.3918 3.0912 46 1 3.9227 1.5872 2.9416 47 1 5.4206 2.1760 5.1027 48 1 6.8093 4.0015 7.5273 49 1 4.0627 -1.6253 1.2150 50 1 4.0401 0.1645 0.8957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485495970.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:40 Heat of formation + Delta-G solvation = -90.987892 kcal Electronic energy + Delta-G solvation = -29148.843264 eV Core-core repulsion = 24983.821042 eV Total energy + Delta-G solvation = -4165.022222 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.76051 -40.04454 -39.09249 -37.75821 -35.52237 -33.95520 -33.86491 -31.76749 -31.19070 -30.27596 -29.47238 -27.38547 -25.99604 -25.77675 -24.15872 -22.99378 -22.17872 -21.11240 -20.59788 -19.65539 -19.18472 -17.89418 -17.49769 -17.07015 -16.70087 -16.17354 -15.93948 -15.62557 -15.45215 -15.07556 -14.91051 -14.61302 -14.45917 -14.03230 -13.75323 -13.66342 -13.57058 -13.33572 -13.02420 -12.83331 -12.59636 -12.52787 -12.33366 -12.09873 -11.95681 -11.71069 -11.56377 -11.32819 -11.28783 -11.23427 -11.07194 -10.93664 -10.87073 -10.59869 -10.38239 -10.19757 -10.07873 -9.81650 -9.48290 -9.37124 -8.71992 -8.16030 -7.94144 -6.39863 -3.80574 2.34382 2.79547 3.18891 3.27188 3.33143 3.52751 3.88343 3.92965 3.95233 4.19634 4.22327 4.31493 4.43905 4.50642 4.52653 4.75239 4.82756 4.86595 4.98019 5.02831 5.08636 5.11860 5.16861 5.20106 5.25284 5.28455 5.37026 5.40013 5.42815 5.43701 5.50878 5.65060 5.67825 5.68742 5.71894 5.75712 5.78356 5.92505 5.98851 6.17669 6.26505 6.29072 6.57959 6.64779 7.16379 7.20459 7.56776 7.93503 8.08050 8.64267 9.20396 9.56866 10.09337 10.78060 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024576 B = 0.001702 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.040738 B =16447.732784 C =16922.217463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 H 0.088 0.912 4 N -0.723 5.723 5 C 0.511 3.489 6 O -0.537 6.537 7 C -0.132 4.132 8 C -0.106 4.106 9 H 0.094 0.906 10 C -0.154 4.154 11 C 0.050 3.950 12 O -0.389 6.389 13 C 0.061 3.939 14 C -0.126 4.126 15 C 0.023 3.977 16 N -0.449 5.449 17 C 0.010 3.990 18 C 0.446 3.554 19 O -0.576 6.576 20 N -0.567 5.567 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.005 3.995 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.401 0.599 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.104 0.896 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.057 0.943 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.087 0.913 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.804 -8.718 -26.906 28.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.106 0.894 4 N -0.374 5.374 5 C 0.297 3.703 6 O -0.414 6.414 7 C -0.172 4.172 8 C -0.125 4.125 9 H 0.112 0.888 10 C -0.192 4.192 11 C -0.026 4.026 12 O -0.308 6.308 13 C -0.015 4.015 14 C -0.145 4.145 15 C -0.107 4.107 16 N -0.171 5.171 17 C -0.122 4.122 18 C 0.232 3.768 19 O -0.459 6.459 20 N -0.205 5.205 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 C -0.124 4.124 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.234 0.766 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.123 0.877 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.075 0.925 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.105 0.895 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.500 -8.680 -26.075 28.240 hybrid contribution 0.853 0.690 0.406 1.170 sum -5.648 -7.990 -25.669 27.470 Atomic orbital electron populations 1.22132 0.94894 1.02212 1.02717 1.21061 0.94329 0.97150 0.82958 0.89355 1.46078 1.67511 1.14136 1.09705 1.20646 0.77601 0.87475 0.84575 1.90725 1.49760 1.15940 1.84948 1.21688 1.03692 0.99218 0.92627 1.22480 0.97861 0.98476 0.93680 0.88758 1.23355 1.01625 1.00117 0.94060 1.23347 0.84582 0.97908 0.96759 1.88408 1.31703 1.90953 1.19776 1.23189 0.95829 1.02149 0.80367 1.23343 0.96451 1.00958 0.93794 1.23916 0.94618 0.97403 0.94720 1.68376 1.01842 1.33515 1.13323 1.22479 0.98660 0.94446 0.96619 1.19685 0.85039 0.84334 0.87791 1.90516 1.41074 1.43592 1.70718 1.41883 1.38516 1.32630 1.07440 1.19698 1.23376 1.18122 0.81579 0.87965 1.25256 0.96147 0.95967 1.00645 1.69615 1.26493 1.21721 1.36638 0.85857 0.78864 0.77299 0.82260 1.20424 1.20955 1.19446 1.23969 0.95533 1.02046 0.90861 0.92384 0.91194 0.92223 0.76550 0.88535 0.88232 0.89639 0.90120 0.89798 0.92124 0.91743 0.90328 0.87740 0.91239 0.88772 0.89522 0.92461 0.77573 0.91925 0.89483 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.44 37.16 0.35 -1.07 16 2 C 0.15 1.36 2.29 -67.92 -0.16 1.21 16 3 H 0.09 1.00 7.48 -51.93 -0.39 0.62 16 4 N -0.72 -5.16 4.94 -53.80 -0.27 -5.43 16 5 C 0.51 4.33 7.58 -10.99 -0.08 4.24 16 6 O -0.54 -6.69 14.56 5.55 0.08 -6.61 16 7 C -0.13 -0.69 5.10 -27.88 -0.14 -0.83 16 8 C -0.11 -0.71 2.59 -88.68 -0.23 -0.94 16 9 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 10 C -0.15 -0.76 6.62 -24.48 -0.16 -0.92 16 11 C 0.05 0.33 7.78 38.19 0.30 0.63 16 12 O -0.39 -3.89 11.36 -35.23 -0.40 -4.29 16 13 C 0.06 0.55 6.38 37.88 0.24 0.79 16 14 C -0.13 -1.25 3.35 -89.69 -0.30 -1.56 16 15 C 0.02 0.31 7.41 -2.77 -0.02 0.29 16 16 N -0.45 -7.24 5.65 -239.75 -1.35 -8.59 16 17 C 0.01 0.18 5.28 -4.98 -0.03 0.15 16 18 C 0.45 10.76 7.83 -10.99 -0.09 10.67 16 19 O -0.58 -16.00 16.01 5.55 0.09 -15.91 16 20 N -0.57 -14.63 5.29 -10.96 -0.06 -14.68 16 21 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 22 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 25 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 C 0.01 0.06 7.38 -2.77 -0.02 0.04 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.40 1.85 8.60 -40.82 -0.35 1.50 16 34 H 0.10 0.35 8.07 -51.93 -0.42 -0.07 16 35 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.33 8.04 -51.93 -0.42 -0.09 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.55 7.76 -51.93 -0.40 0.15 16 41 H 0.08 0.84 7.73 -51.93 -0.40 0.43 16 42 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 0.93 7.36 -51.93 -0.38 0.55 16 44 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 46 H 0.06 0.93 7.38 -51.93 -0.38 0.55 16 47 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 49 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.07 0.74 7.88 -51.93 -0.41 0.33 16 LS Contribution 407.11 15.07 6.14 6.14 Total: -1.00 -35.03 407.11 -9.10 -44.14 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -8.45 Total: 8.50 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.58 Total: 4.61 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.95 Total: -52.81 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.23 Total: -26.81 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.03 -9.10 -44.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485495970.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.853 kcal (2) G-P(sol) polarization free energy of solvation -35.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds