Wall clock time and date at job start Sat Apr 11 2020 05:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47265 * 2 1 4 4 N 1.46503 * 109.46792 * 240.00190 * 2 1 3 5 5 C 1.34771 * 120.00072 * 84.99889 * 4 2 1 6 6 O 1.21285 * 120.00036 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00048 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47354 * 179.97438 * 7 5 4 9 9 H 1.09004 * 110.74615 * 57.02411 * 8 7 5 10 10 C 1.55301 * 110.85016 * 180.71933 * 8 7 5 11 11 C 1.54948 * 100.94292 * 152.32759 * 10 8 7 12 12 O 1.43647 * 105.13189 * 323.55397 * 11 10 8 13 13 C 1.43232 * 109.97280 * 24.43046 * 12 11 10 14 14 C 1.53005 * 109.47117 * 120.00002 * 2 1 3 15 15 C 1.53928 * 113.73367 * 281.72600 * 14 2 1 16 16 N 1.47959 * 86.18282 * 221.92191 * 15 14 2 17 17 C 1.46896 * 111.00178 * 137.58444 * 16 15 14 18 18 C 1.50694 * 109.47012 * 90.64010 * 17 16 15 19 19 O 1.21290 * 120.00521 * 0.02562 * 18 17 16 20 20 N 1.34778 * 119.99942 * 180.02562 * 18 17 16 21 21 C 1.37098 * 120.00114 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00335 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00027 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99776 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99854 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46949 * 90.00420 * 25 23 21 27 27 H 1.48495 * 109.47117 * 210.00325 * 25 23 21 28 28 H 1.48496 * 109.47185 * 330.00380 * 25 23 21 29 29 C 1.47964 * 90.75933 * 24.69020 * 16 15 14 30 30 H 1.08998 * 109.47327 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47009 * 300.04808 * 1 2 3 32 32 H 1.08996 * 109.47317 * 60.04688 * 1 2 3 33 33 H 0.97001 * 119.99420 * 264.99826 * 4 2 1 34 34 H 1.09005 * 109.46544 * 60.00381 * 7 5 4 35 35 H 1.08995 * 109.47751 * 300.00898 * 7 5 4 36 36 H 1.09003 * 111.12653 * 270.24613 * 10 8 7 37 37 H 1.09003 * 111.12349 * 34.40590 * 10 8 7 38 38 H 1.09005 * 110.30490 * 204.63983 * 11 10 8 39 39 H 1.08999 * 110.39152 * 82.51331 * 11 10 8 40 40 H 1.08995 * 109.82980 * 238.77395 * 13 12 11 41 41 H 1.09000 * 109.83098 * 117.79840 * 13 12 11 42 42 H 1.09000 * 112.93564 * 53.43667 * 14 2 1 43 43 H 1.08997 * 113.76157 * 336.24265 * 15 14 2 44 44 H 1.09002 * 113.75640 * 107.60429 * 15 14 2 45 45 H 1.09000 * 109.47512 * 210.64484 * 17 16 15 46 46 H 1.09006 * 109.46994 * 330.64438 * 17 16 15 47 47 H 0.97005 * 120.00272 * 0.02562 * 20 18 17 48 48 H 0.97002 * 119.99370 * 179.97438 * 24 23 21 49 49 H 1.08997 * 113.75721 * 220.99259 * 29 16 15 50 50 H 1.09002 * 113.75809 * 89.63033 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8590 1.1587 -2.4115 7 6 2.6498 -0.7285 -3.5875 8 6 2.7005 0.2544 -4.7589 9 1 3.3264 1.1130 -4.5157 10 6 3.1982 -0.4500 -6.0504 11 6 2.5094 0.4108 -7.1391 12 8 1.2276 0.7551 -6.5896 13 6 1.2795 0.7062 -5.1590 14 6 2.0401 -0.7213 1.2493 15 6 1.9766 0.1338 2.5277 16 7 3.3111 -0.4203 2.8459 17 6 4.2041 0.6235 3.3663 18 6 4.0866 0.6826 4.8675 19 8 3.3334 -0.0710 5.4470 20 7 4.8185 1.5729 5.5662 21 6 4.7112 1.6270 6.9319 22 1 4.0405 0.9560 7.4480 23 6 5.4661 2.5446 7.6523 24 7 6.2825 3.3608 7.0244 25 14 5.3205 2.6178 9.5132 26 1 6.3126 1.6969 10.1239 27 1 5.5818 4.0044 9.9759 28 1 3.9514 2.2102 9.9189 29 6 3.5701 -0.6730 1.4112 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5146 0.8895 32 1 -0.3634 0.5131 -0.8904 33 1 2.2490 -1.6318 -1.1526 34 1 1.9774 -1.5508 -3.8325 35 1 3.6490 -1.1205 -3.3981 36 1 4.2836 -0.3950 -6.1345 37 1 2.8548 -1.4837 -6.0913 38 1 2.3855 -0.1664 -8.0555 39 1 3.0911 1.3114 -7.3356 40 1 0.5457 -0.0086 -4.7867 41 1 1.0763 1.6949 -4.7476 42 1 1.6179 -1.7194 1.3656 43 1 1.9804 1.2072 2.3387 44 1 1.1960 -0.1739 3.2234 45 1 5.2330 0.3918 3.0912 46 1 3.9227 1.5872 2.9416 47 1 5.4206 2.1760 5.1027 48 1 6.8093 4.0015 7.5273 49 1 4.0627 -1.6253 1.2150 50 1 4.0401 0.1645 0.8957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485495970.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:39 Heat of formation + Delta-G solvation = -119.206927 kcal Electronic energy + Delta-G solvation = -29150.066933 eV Core-core repulsion = 24983.821042 eV Total energy + Delta-G solvation = -4166.245891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.61695 -40.90309 -39.93963 -39.46073 -36.39208 -35.89282 -34.53461 -33.32425 -32.55582 -30.96647 -30.48282 -27.99247 -27.42245 -26.96319 -25.63016 -23.63637 -22.98851 -21.82094 -21.27235 -20.99109 -20.49062 -19.89793 -18.17080 -17.84955 -17.68310 -17.38353 -16.78642 -16.68146 -16.52572 -16.26172 -16.16298 -15.72133 -15.53352 -15.43919 -14.93936 -14.86352 -14.20728 -14.12686 -14.04383 -13.92645 -13.70171 -13.52758 -13.46218 -13.09401 -12.99711 -12.88581 -12.54906 -12.45029 -12.43030 -12.18876 -12.14233 -11.91598 -11.84102 -11.80001 -11.68823 -11.59883 -11.50461 -10.79069 -10.47663 -10.38842 -10.08321 -10.02334 -9.62340 -8.47748 -5.96766 1.37032 1.40358 1.53439 1.72186 2.04417 2.17157 2.27734 2.77211 2.98348 3.18265 3.33977 3.40597 3.49030 3.65440 3.78265 3.91500 3.97651 4.11853 4.16848 4.20637 4.28493 4.33013 4.36981 4.39467 4.48239 4.49441 4.52083 4.54170 4.64313 4.75725 4.77102 4.79743 4.82867 4.84396 4.92385 4.98556 5.00909 5.08500 5.19870 5.30292 5.33699 5.38948 5.42950 5.57010 5.89205 6.06110 6.07824 6.59407 6.64923 7.11838 7.35548 7.55204 8.11568 8.69754 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024576 B = 0.001702 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.040738 B =16447.732784 C =16922.217463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.158 3.842 3 H 0.065 0.935 4 N -0.711 5.711 5 C 0.506 3.494 6 O -0.584 6.584 7 C -0.122 4.122 8 C -0.105 4.105 9 H 0.077 0.923 10 C -0.141 4.141 11 C 0.038 3.962 12 O -0.416 6.416 13 C 0.060 3.940 14 C -0.097 4.097 15 C 0.012 3.988 16 N -0.482 5.482 17 C 0.024 3.976 18 C 0.442 3.558 19 O -0.618 6.618 20 N -0.577 5.577 21 C -0.334 4.334 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.273 1.273 29 C 0.014 3.986 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.417 0.583 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.049 0.951 42 H 0.121 0.879 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.106 0.894 46 H 0.074 0.926 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.108 0.892 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.785 -10.517 -28.199 30.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.053 3.947 3 H 0.083 0.917 4 N -0.363 5.363 5 C 0.294 3.706 6 O -0.464 6.464 7 C -0.162 4.162 8 C -0.124 4.124 9 H 0.095 0.905 10 C -0.178 4.178 11 C -0.038 4.038 12 O -0.337 6.337 13 C -0.017 4.017 14 C -0.116 4.116 15 C -0.117 4.117 16 N -0.204 5.204 17 C -0.108 4.108 18 C 0.229 3.771 19 O -0.503 6.503 20 N -0.214 5.214 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.195 1.195 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.114 4.114 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.254 0.746 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.139 0.861 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.124 0.876 46 H 0.092 0.908 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.126 0.874 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.455 -10.506 -27.399 29.847 hybrid contribution 0.498 1.265 0.755 1.555 sum -4.957 -9.241 -26.644 28.633 Atomic orbital electron populations 1.22086 0.94632 1.02996 1.01845 1.20784 0.94419 0.96066 0.83446 0.91701 1.45922 1.66841 1.14821 1.08687 1.21281 0.76720 0.87015 0.85550 1.90724 1.51783 1.18190 1.85661 1.21711 1.05702 0.98816 0.89959 1.22431 0.95932 0.98665 0.95357 0.90498 1.23335 1.02530 1.00264 0.91685 1.23605 0.83579 0.98627 0.97948 1.88375 1.33753 1.91271 1.20265 1.23141 0.97673 1.00717 0.80141 1.23122 0.95687 1.00746 0.92076 1.23952 0.93285 0.98037 0.96436 1.68345 1.02425 1.33100 1.16566 1.22343 1.00460 0.96250 0.91756 1.20806 0.83258 0.82620 0.90413 1.90477 1.42496 1.44920 1.72441 1.41971 1.39169 1.33356 1.06952 1.19667 1.24486 1.19139 0.83094 0.90402 1.26057 0.95267 0.95027 1.04997 1.69677 1.26502 1.21767 1.38293 0.84912 0.78641 0.77941 0.76743 1.19536 1.19495 1.19812 1.24054 0.96521 1.03242 0.87620 0.90715 0.91707 0.93512 0.74553 0.86065 0.85324 0.87770 0.88399 0.88262 0.92253 0.91479 0.93283 0.86134 0.91369 0.90643 0.87582 0.90829 0.77122 0.91310 0.87413 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.44 71.98 0.68 -1.94 16 2 C 0.16 2.65 2.29 44.99 0.10 2.76 16 3 H 0.06 1.45 7.48 -2.38 -0.02 1.43 16 4 N -0.71 -8.31 4.94 -442.51 -2.19 -10.50 16 5 C 0.51 7.70 7.58 87.66 0.66 8.36 16 6 O -0.58 -14.63 14.56 -3.04 -0.04 -14.67 16 7 C -0.12 -0.90 5.10 29.85 0.15 -0.74 16 8 C -0.10 -1.25 2.59 -9.54 -0.02 -1.28 16 9 H 0.08 1.19 8.05 -2.39 -0.02 1.17 16 10 C -0.14 -0.98 6.62 32.05 0.21 -0.77 16 11 C 0.04 0.45 7.78 72.65 0.57 1.02 16 12 O -0.42 -8.31 11.36 -148.98 -1.69 -10.01 16 13 C 0.06 1.08 6.38 72.45 0.46 1.54 16 14 C -0.10 -1.73 3.35 -10.15 -0.03 -1.77 16 15 C 0.01 0.34 7.41 86.40 0.64 0.98 16 16 N -0.48 -15.03 5.65 -912.44 -5.15 -20.18 16 17 C 0.02 0.83 5.28 85.56 0.45 1.28 16 18 C 0.44 21.69 7.83 87.66 0.69 22.38 16 19 O -0.62 -35.35 16.01 -3.06 -0.05 -35.39 16 20 N -0.58 -30.40 5.29 -306.98 -1.62 -32.02 16 21 C -0.33 -19.40 9.68 84.04 0.81 -18.59 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 24 N -0.92 -50.45 13.05 21.66 0.28 -50.17 16 25 Si 0.99 43.53 29.55 68.60 2.03 45.55 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 28 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 29 C 0.01 0.28 7.38 86.40 0.64 0.91 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.14 8.09 -2.39 -0.02 1.12 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.42 2.18 8.60 -92.71 -0.80 1.38 16 34 H 0.12 0.36 8.07 -2.38 -0.02 0.34 16 35 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.10 0.39 8.04 -2.39 -0.02 0.37 16 38 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.07 1.13 7.76 -2.39 -0.02 1.11 16 41 H 0.05 1.14 7.73 -2.39 -0.02 1.12 16 42 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.07 1.85 7.36 -2.39 -0.02 1.83 16 44 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.11 3.29 8.08 -2.39 -0.02 3.27 16 46 H 0.07 2.34 7.38 -2.38 -0.02 2.32 16 47 H 0.40 19.77 7.90 -92.70 -0.73 19.04 16 48 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 49 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 50 H 0.07 1.42 7.88 -2.39 -0.02 1.40 16 Total: -1.00 -79.58 407.11 -2.54 -82.12 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: -0.58 Total: 31.42 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 6.48 Total: 13.85 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -8.68 Total: -112.87 kcal Atomic # 8 Polarization: -58.29 SS G_CDS: -1.79 Total: -60.07 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -79.58 -2.54 -82.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485495970.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.084 kcal (2) G-P(sol) polarization free energy of solvation -79.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds