Wall clock time and date at job start Sat Apr 11 2020 05:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47184 * 2 1 4 4 N 1.46506 * 109.47401 * 119.99722 * 2 1 3 5 5 C 1.34774 * 119.99843 * 275.00766 * 4 2 1 6 6 O 1.21281 * 120.00081 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99738 * 179.97438 * 5 4 2 8 8 C 1.52999 * 109.47227 * 179.97438 * 7 5 4 9 9 H 1.08999 * 110.99162 * 57.74208 * 8 7 5 10 10 C 1.55457 * 111.18505 * 181.89694 * 8 7 5 11 11 C 1.54382 * 102.18540 * 152.00739 * 10 8 7 12 12 O 1.43233 * 107.66464 * 338.74226 * 11 10 8 13 13 C 1.43650 * 109.97542 * 358.24175 * 12 11 10 14 14 C 1.53003 * 109.47460 * 239.99823 * 2 1 3 15 15 C 1.53935 * 113.73376 * 158.76252 * 14 2 1 16 16 N 1.48190 * 86.10342 * 221.96136 * 15 14 2 17 17 C 1.46896 * 111.07215 * 137.52226 * 16 15 14 18 18 C 1.50702 * 109.46957 * 90.56584 * 17 16 15 19 19 O 1.21293 * 119.99960 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99691 * 180.02562 * 18 17 16 21 21 C 1.37102 * 119.99679 * 180.02562 * 20 18 17 22 22 H 1.07993 * 120.00247 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99647 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00194 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99902 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46759 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47200 * 119.99862 * 25 23 21 28 28 H 1.48499 * 109.47115 * 240.00081 * 25 23 21 29 29 C 1.47963 * 90.79517 * 24.60057 * 16 15 14 30 30 H 1.09004 * 109.46705 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47248 * 299.99814 * 1 2 3 32 32 H 1.08994 * 109.47057 * 60.00389 * 1 2 3 33 33 H 0.96996 * 119.99832 * 94.99648 * 4 2 1 34 34 H 1.08994 * 109.47613 * 59.99502 * 7 5 4 35 35 H 1.09002 * 109.46889 * 299.99480 * 7 5 4 36 36 H 1.08994 * 110.83103 * 33.85804 * 10 8 7 37 37 H 1.08999 * 110.92148 * 270.19682 * 10 8 7 38 38 H 1.09002 * 109.83024 * 219.18066 * 11 10 8 39 39 H 1.08996 * 109.83002 * 98.29659 * 11 10 8 40 40 H 1.08996 * 110.30866 * 143.34644 * 13 12 11 41 41 H 1.09000 * 110.30998 * 265.51637 * 13 12 11 42 42 H 1.08992 * 112.93703 * 290.33404 * 14 2 1 43 43 H 1.09006 * 113.75967 * 336.24191 * 15 14 2 44 44 H 1.09000 * 113.75638 * 107.60456 * 15 14 2 45 45 H 1.08997 * 109.46826 * 210.56415 * 17 16 15 46 46 H 1.09004 * 109.47156 * 330.56445 * 17 16 15 47 47 H 0.97002 * 120.00571 * 359.97438 * 20 18 17 48 48 H 0.97003 * 120.00104 * 180.02562 * 24 23 21 49 49 H 1.09008 * 113.75525 * 221.08335 * 29 16 15 50 50 H 1.08997 * 113.85808 * 89.73873 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8588 1.1587 2.4115 7 6 2.6488 -0.7287 3.5877 8 6 2.7009 0.2546 4.7588 9 1 1.7205 0.6933 4.9442 10 6 3.2594 -0.4264 6.0398 11 6 3.8965 0.7630 6.7899 12 8 4.1509 1.7958 5.8306 13 6 3.7676 1.3526 4.5190 14 6 2.0401 -0.7213 -1.2492 15 6 3.4850 -0.3524 -1.6311 16 7 2.9995 -0.3202 -3.0309 17 6 3.5500 0.8336 -3.7544 18 6 4.8447 0.4395 -4.4175 19 8 5.2669 -0.6914 -4.2993 20 7 5.5333 1.3438 -5.1418 21 6 6.7108 0.9851 -5.7455 22 1 7.0868 -0.0218 -5.6403 23 6 7.4205 1.9172 -6.4927 24 7 6.9627 3.1423 -6.6211 25 14 9.0253 1.4288 -7.3147 26 1 9.3195 0.0038 -7.0183 27 1 8.9061 1.6151 -8.7831 28 1 10.1262 2.2795 -6.7955 29 6 1.6208 -0.0474 -2.5682 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 2.2491 -1.6317 1.1527 34 1 3.6479 -1.1212 3.3987 35 1 1.9759 -1.5505 3.8326 36 1 4.0120 -1.1726 5.7853 37 1 2.4552 -0.8696 6.6271 38 1 4.8322 0.4497 7.2529 39 1 3.2104 1.1288 7.5537 40 1 3.3396 2.1783 3.9507 41 1 4.6274 0.9365 3.9940 42 1 1.8529 -1.7948 -1.2261 43 1 3.8042 0.6195 -1.2546 44 1 4.2072 -1.1444 -1.4336 45 1 2.8382 1.1602 -4.5125 46 1 3.7339 1.6480 -3.0536 47 1 5.1954 2.2481 -5.2367 48 1 7.4579 3.7929 -7.1431 49 1 0.8564 -0.5964 -3.1182 50 1 1.3918 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485495973.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:49 Heat of formation + Delta-G solvation = -90.918764 kcal Electronic energy + Delta-G solvation = -29284.388445 eV Core-core repulsion = 25119.369220 eV Total energy + Delta-G solvation = -4165.019225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.71545 -40.00154 -39.05817 -37.75524 -35.50978 -33.90818 -33.86071 -31.76078 -31.18418 -30.23832 -29.42370 -27.39681 -26.17855 -25.57093 -24.15724 -22.90376 -22.16398 -21.11822 -20.62627 -19.60539 -19.16215 -17.88732 -17.50877 -16.84849 -16.77482 -16.11724 -16.00474 -15.66707 -15.22390 -15.00394 -14.94592 -14.68372 -14.33451 -14.06466 -13.83446 -13.72564 -13.57513 -13.28541 -13.06303 -12.77365 -12.57979 -12.42053 -12.31484 -12.07094 -11.90533 -11.73751 -11.60743 -11.38472 -11.22162 -11.15410 -11.08035 -10.97627 -10.69168 -10.67576 -10.33008 -10.20167 -10.01944 -9.78301 -9.48959 -9.35252 -8.70492 -8.15383 -7.93666 -6.39411 -3.80125 2.36814 2.81871 3.17624 3.27796 3.35070 3.60155 3.88762 3.95053 3.97875 4.21547 4.27872 4.33032 4.47701 4.51489 4.54101 4.73901 4.88697 4.93890 4.97057 5.00460 5.12616 5.14642 5.18448 5.21870 5.23405 5.32515 5.37211 5.40152 5.43271 5.49355 5.51383 5.63757 5.69170 5.73256 5.75512 5.78498 5.83550 5.89334 5.99363 6.12434 6.29653 6.30571 6.58542 6.71750 7.17347 7.22438 7.57392 7.95919 8.08766 8.64723 9.20922 9.57477 10.09820 10.78576 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012375 B = 0.002047 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.115100 B =13675.398490 C =15209.550705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 H 0.089 0.911 4 N -0.723 5.723 5 C 0.512 3.488 6 O -0.538 6.538 7 C -0.132 4.132 8 C -0.106 4.106 9 H 0.094 0.906 10 C -0.153 4.153 11 C 0.050 3.950 12 O -0.386 6.386 13 C 0.057 3.943 14 C -0.125 4.125 15 C 0.018 3.982 16 N -0.449 5.449 17 C 0.010 3.990 18 C 0.447 3.553 19 O -0.576 6.576 20 N -0.568 5.568 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.020 3.980 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.010 3.990 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.401 0.599 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.057 0.943 42 H 0.103 0.897 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.057 0.943 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.091 0.909 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.931 -7.165 22.855 27.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.107 0.893 4 N -0.374 5.374 5 C 0.298 3.702 6 O -0.414 6.414 7 C -0.172 4.172 8 C -0.125 4.125 9 H 0.113 0.887 10 C -0.191 4.191 11 C -0.027 4.027 12 O -0.305 6.305 13 C -0.019 4.019 14 C -0.145 4.145 15 C -0.111 4.111 16 N -0.171 5.171 17 C -0.122 4.122 18 C 0.232 3.768 19 O -0.460 6.460 20 N -0.205 5.205 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.181 4.181 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.120 4.120 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.235 0.765 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.075 0.925 42 H 0.122 0.878 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.075 0.925 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.109 0.891 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.528 -7.256 22.446 27.194 hybrid contribution 0.525 0.476 -0.254 0.753 sum -13.003 -6.780 22.192 26.600 Atomic orbital electron populations 1.22129 0.94989 1.02171 1.02598 1.21063 0.94152 0.97254 0.83072 0.89322 1.46088 1.67509 1.14168 1.09682 1.20630 0.77482 0.87457 0.84598 1.90712 1.49795 1.15920 1.85005 1.21629 1.03707 0.99285 0.92586 1.22625 1.01090 0.95526 0.93242 0.88747 1.23236 1.01060 0.98424 0.96387 1.23085 0.99794 0.87540 0.92250 1.88429 1.86005 1.39086 1.17023 1.23523 0.95586 0.97999 0.84779 1.23316 0.97000 1.01107 0.93036 1.24013 0.95954 1.01711 0.89422 1.68411 1.01651 1.35842 1.11231 1.22479 0.97823 0.92773 0.99158 1.19692 0.86378 0.86514 0.84232 1.90514 1.70346 1.20420 1.64683 1.41892 1.21308 1.12326 1.44977 1.19738 0.97636 0.98701 1.26592 0.87933 1.25260 0.99898 0.95011 0.97913 1.69620 1.39985 1.03445 1.41387 0.85807 0.81098 0.78838 0.78639 1.19247 1.20764 1.20781 1.23949 0.94284 0.99730 0.94011 0.92396 0.92241 0.91324 0.76480 0.88374 0.88341 0.90250 0.89843 0.91522 0.91390 0.88319 0.92477 0.87839 0.91427 0.89156 0.89418 0.92462 0.77557 0.91965 0.89111 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.31 37.16 0.35 -0.95 16 2 C 0.15 1.35 2.38 -67.93 -0.16 1.19 16 3 H 0.09 1.01 7.42 -51.93 -0.39 0.62 16 4 N -0.72 -5.51 5.08 -53.80 -0.27 -5.78 16 5 C 0.51 4.58 7.59 -10.99 -0.08 4.50 16 6 O -0.54 -6.87 14.26 5.56 0.08 -6.79 16 7 C -0.13 -0.76 5.23 -27.89 -0.15 -0.91 16 8 C -0.11 -0.78 2.67 -88.29 -0.24 -1.01 16 9 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16 10 C -0.15 -0.85 6.52 -24.70 -0.16 -1.01 16 11 C 0.05 0.37 7.79 37.88 0.30 0.67 16 12 O -0.39 -4.34 11.36 -35.23 -0.40 -4.74 16 13 C 0.06 0.57 6.55 38.18 0.25 0.82 16 14 C -0.13 -1.24 3.46 -89.69 -0.31 -1.55 16 15 C 0.02 0.25 7.53 -2.63 -0.02 0.23 16 16 N -0.45 -7.26 5.65 -239.49 -1.35 -8.62 16 17 C 0.01 0.17 5.28 -4.98 -0.03 0.15 16 18 C 0.45 10.80 7.83 -10.99 -0.09 10.71 16 19 O -0.58 -16.04 16.01 5.55 0.09 -15.96 16 20 N -0.57 -14.68 5.29 -10.96 -0.06 -14.74 16 21 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 22 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 24 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 25 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 C 0.01 0.11 6.65 -2.76 -0.02 0.09 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.52 7.51 -51.93 -0.39 0.13 16 33 H 0.40 2.09 8.60 -40.82 -0.35 1.74 16 34 H 0.10 0.45 8.10 -51.93 -0.42 0.03 16 35 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.36 8.04 -51.93 -0.42 -0.05 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 1.16 7.14 -51.93 -0.37 0.79 16 41 H 0.06 0.55 8.00 -51.93 -0.42 0.13 16 42 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.95 7.33 -51.93 -0.38 0.57 16 44 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 46 H 0.06 0.94 7.39 -51.93 -0.38 0.55 16 47 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 50 H 0.07 0.73 7.88 -51.93 -0.41 0.32 16 LS Contribution 405.73 15.07 6.11 6.11 Total: -1.00 -35.26 405.73 -9.10 -44.36 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -8.40 Total: 9.21 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -0.60 Total: 4.82 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.96 Total: -53.32 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.23 Total: -27.48 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.26 -9.10 -44.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485495973.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.560 kcal (2) G-P(sol) polarization free energy of solvation -35.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds