Wall clock time and date at job start Sat Apr 11 2020 05:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42901 * 114.00181 * 2 1 4 4 H 1.09001 * 109.46801 * 329.99477 * 3 2 1 5 5 C 1.52993 * 109.47757 * 89.99679 * 3 2 1 6 6 C 1.53003 * 109.47287 * 210.00315 * 3 2 1 7 7 C 1.53000 * 109.47531 * 64.99125 * 6 3 2 8 8 C 1.50696 * 109.47111 * 180.02562 * 7 6 3 9 9 O 1.21276 * 119.99858 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99772 * 180.02562 * 8 7 6 11 11 C 1.47868 * 126.92933 * 0.02916 * 10 8 7 12 12 C 1.56018 * 105.11477 * 181.91188 * 11 10 8 13 13 H 1.08996 * 116.26157 * 158.84615 * 12 11 10 14 14 C 1.57093 * 99.60025 * 32.80385 * 12 11 10 15 15 C 1.49284 * 126.92771 * 179.71170 * 10 8 7 16 16 H 1.08998 * 116.12292 * 16.01931 * 15 10 8 17 17 C 1.58435 * 103.73240 * 246.73552 * 15 10 8 18 18 N 1.48281 * 104.80088 * 288.57309 * 17 15 10 19 19 C 1.46898 * 111.00075 * 122.84820 * 18 17 15 20 20 C 1.50697 * 109.47163 * 78.75516 * 19 18 17 21 21 O 1.21293 * 120.00109 * 359.97438 * 20 19 18 22 22 N 1.34783 * 120.00028 * 179.97438 * 20 19 18 23 23 C 1.37093 * 119.99825 * 180.02562 * 22 20 19 24 24 H 1.08002 * 120.00451 * 359.97438 * 23 22 20 25 25 C 1.38950 * 119.99803 * 180.02562 * 23 22 20 26 26 N 1.31406 * 119.99984 * 359.97438 * 25 23 22 27 27 Si 1.86808 * 119.99993 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47111 * 89.99609 * 27 25 23 29 29 H 1.48503 * 109.46905 * 209.99636 * 27 25 23 30 30 H 1.48498 * 109.46720 * 329.99727 * 27 25 23 31 31 H 1.09003 * 109.47179 * 60.00199 * 1 2 3 32 32 H 1.09004 * 109.47124 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47336 * 300.00239 * 1 2 3 34 34 H 1.09004 * 109.46919 * 300.00284 * 5 3 2 35 35 H 1.09001 * 109.47131 * 59.99999 * 5 3 2 36 36 H 1.09002 * 109.47654 * 180.02562 * 5 3 2 37 37 H 1.08997 * 109.46858 * 184.99661 * 6 3 2 38 38 H 1.08999 * 109.46588 * 304.99211 * 6 3 2 39 39 H 1.08997 * 109.46862 * 300.00576 * 7 6 3 40 40 H 1.08999 * 109.46490 * 59.99980 * 7 6 3 41 41 H 1.09001 * 110.31258 * 300.81842 * 11 10 8 42 42 H 1.08995 * 110.31399 * 63.00044 * 11 10 8 43 43 H 1.08998 * 112.35457 * 64.33216 * 14 12 11 44 44 H 1.08992 * 112.35646 * 191.74930 * 14 12 11 45 45 H 1.09000 * 110.19542 * 169.89140 * 17 15 10 46 46 H 1.09004 * 110.79768 * 47.55734 * 17 15 10 47 47 H 1.09003 * 109.46853 * 198.75120 * 19 18 17 48 48 H 1.08993 * 109.47443 * 318.75276 * 19 18 17 49 49 H 0.96998 * 119.99859 * 0.02562 * 22 20 19 50 50 H 0.97005 * 120.00192 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2176 1.7715 1.4424 6 6 3.3589 1.2633 -0.7213 7 6 3.1383 0.9183 -2.1955 8 6 4.4667 0.8761 -2.9057 9 8 5.4892 1.0995 -2.2930 10 7 4.5185 0.5902 -4.2217 11 6 3.3755 0.2956 -5.1125 12 6 4.0121 -0.0085 -6.5041 13 1 3.4005 -0.5843 -7.1987 14 6 5.3572 -0.6724 -6.0374 15 6 5.7406 0.5133 -5.0755 16 1 6.6912 0.4393 -4.5473 17 6 5.5779 1.7313 -6.0756 18 7 4.4822 1.3274 -6.9894 19 6 3.3900 2.3095 -6.9681 20 6 3.7657 3.4972 -7.8161 21 8 4.8381 3.5232 -8.3822 22 7 2.9101 4.5305 -7.9455 23 6 3.2517 5.6107 -8.7174 24 1 4.2066 5.6340 -9.2215 25 6 2.3698 6.6763 -8.8505 26 7 1.2082 6.6482 -8.2368 27 14 2.8356 8.1486 -9.9017 28 1 2.3835 7.9227 -11.2980 29 1 2.1836 9.3686 -9.3614 30 1 4.3100 8.3248 -9.8811 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.2567 1.8016 1.9562 35 1 2.8829 1.0776 1.9563 36 1 2.6606 2.7675 1.4424 37 1 3.8426 2.2370 -0.6444 38 1 3.9930 0.5052 -0.2617 39 1 2.6545 -0.0554 -2.2723 40 1 2.5040 1.6763 -2.6550 41 1 2.8269 -0.5734 -4.7493 42 1 2.7152 1.1602 -5.1792 43 1 5.1940 -1.6079 -5.5024 44 1 6.0681 -0.7879 -6.8554 45 1 6.5006 1.8844 -6.6354 46 1 5.3069 2.6400 -5.5380 47 1 2.4829 1.8527 -7.3641 48 1 3.2147 2.6358 -5.9430 49 1 2.0526 4.5098 -7.4926 50 1 0.5924 7.3919 -8.3299 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494650459.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:22 Heat of formation + Delta-G solvation = -79.701074 kcal Electronic energy + Delta-G solvation = -30379.379153 eV Core-core repulsion = 26214.846364 eV Total energy + Delta-G solvation = -4164.532789 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.18659 -39.17373 -38.39173 -37.79894 -34.19008 -33.97159 -33.58508 -31.51653 -31.08067 -30.08725 -29.73366 -27.03230 -26.62760 -25.45482 -24.53896 -23.91185 -21.66977 -20.98652 -20.53253 -19.47275 -18.50065 -17.82227 -17.37948 -17.18048 -16.74073 -16.03520 -15.63389 -15.51373 -15.35228 -14.99951 -14.69895 -14.49582 -14.14134 -13.79969 -13.71306 -13.40366 -13.16733 -13.02379 -12.83853 -12.67353 -12.54934 -12.31798 -12.11677 -12.04452 -11.86693 -11.65338 -11.55585 -11.52239 -11.38145 -11.31394 -11.19019 -11.10660 -10.87440 -10.84533 -10.39667 -10.21797 -10.01015 -9.83193 -9.49966 -8.84959 -8.43568 -7.96740 -7.90946 -6.41817 -3.82299 2.57480 2.76760 3.17695 3.26206 3.32134 3.46939 3.79197 3.90797 4.13848 4.20738 4.34100 4.45115 4.54174 4.63208 4.73413 4.86075 4.90328 4.97973 5.02066 5.02867 5.06987 5.18880 5.22546 5.23192 5.30477 5.33026 5.41276 5.42044 5.46276 5.60031 5.63346 5.64698 5.73247 5.75553 5.76628 5.78508 5.84811 5.94070 6.02423 6.06390 6.26523 6.30031 6.90056 6.94333 7.11204 7.44549 7.55212 8.06288 8.08609 8.62221 9.18771 9.54604 10.06994 10.76106 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010028 B = 0.002810 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.398253 B = 9961.323671 C =11722.659251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.083 3.917 4 H 0.063 0.937 5 C -0.174 4.174 6 C -0.100 4.100 7 C -0.134 4.134 8 C 0.532 3.468 9 O -0.544 6.544 10 N -0.622 5.622 11 C 0.060 3.940 12 C 0.053 3.947 13 H 0.134 0.866 14 C -0.130 4.130 15 C 0.105 3.895 16 H 0.126 0.874 17 C 0.043 3.957 18 N -0.488 5.488 19 C 0.035 3.965 20 C 0.445 3.555 21 O -0.574 6.574 22 N -0.567 5.567 23 C -0.297 4.297 24 H 0.102 0.898 25 C 0.022 3.978 26 N -0.904 5.904 27 Si 0.929 3.071 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.060 0.940 47 H 0.088 0.912 48 H 0.052 0.948 49 H 0.391 0.609 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.863 -15.566 14.843 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.304 6.304 3 C 0.025 3.975 4 H 0.081 0.919 5 C -0.232 4.232 6 C -0.138 4.138 7 C -0.174 4.174 8 C 0.321 3.679 9 O -0.422 6.422 10 N -0.357 5.357 11 C -0.065 4.065 12 C -0.055 4.055 13 H 0.152 0.848 14 C -0.169 4.169 15 C 0.002 3.998 16 H 0.144 0.856 17 C -0.086 4.086 18 N -0.211 5.211 19 C -0.096 4.096 20 C 0.230 3.770 21 O -0.457 6.457 22 N -0.204 5.204 23 C -0.426 4.426 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.545 5.545 27 Si 0.756 3.244 28 H -0.204 1.204 29 H -0.210 1.210 30 H -0.194 1.194 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.116 0.884 45 H 0.111 0.889 46 H 0.079 0.921 47 H 0.107 0.893 48 H 0.070 0.930 49 H 0.224 0.776 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.464 -15.413 14.351 21.111 hybrid contribution -1.233 1.186 0.589 1.810 sum -2.697 -14.227 14.941 20.806 Atomic orbital electron populations 1.22783 0.81261 1.02650 0.99994 1.87926 1.19467 1.27935 1.95100 1.22211 0.94885 0.84614 0.95759 0.91936 1.22261 1.02278 1.01949 0.96668 1.21462 0.95629 1.03817 0.92866 1.21619 0.95084 1.04460 0.96253 1.20392 0.91591 0.75771 0.80109 1.90694 1.36611 1.49764 1.65082 1.49328 1.08915 1.69732 1.07737 1.23365 0.89693 1.01588 0.91832 1.24762 0.96288 0.92253 0.92236 0.84819 1.23936 0.97168 0.96773 0.99002 1.24704 0.89689 0.95850 0.89525 0.85622 1.24074 0.96755 0.95708 0.92081 1.64569 1.07899 1.00565 1.48060 1.22134 0.94685 0.93890 0.98908 1.19723 0.86467 0.84416 0.86405 1.90524 1.23921 1.80597 1.50655 1.41852 1.17668 1.16314 1.44598 1.19685 1.03668 0.94650 1.24632 0.87975 1.25238 0.95257 0.99308 0.98144 1.69606 1.08291 1.33167 1.43468 0.85873 0.78848 0.80129 0.79544 1.20396 1.20963 1.19438 0.93909 0.89747 0.94199 0.92519 0.91653 0.91350 0.89752 0.90263 0.88421 0.89233 0.90946 0.90231 0.89911 0.88429 0.88947 0.92123 0.89347 0.92994 0.77641 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 101.05 1.09 1.30 16 2 O -0.39 -3.67 9.88 -35.23 -0.35 -4.02 16 3 C 0.08 0.72 2.72 -26.73 -0.07 0.65 16 4 H 0.06 0.50 7.79 -51.93 -0.40 0.09 16 5 C -0.17 -1.35 9.53 37.15 0.35 -1.00 16 6 C -0.10 -1.02 4.21 -26.73 -0.11 -1.13 16 7 C -0.13 -1.38 4.88 -27.88 -0.14 -1.52 16 8 C 0.53 7.16 7.89 -10.99 -0.09 7.07 16 9 O -0.54 -9.17 16.32 5.56 0.09 -9.08 16 10 N -0.62 -7.68 2.95 -155.09 -0.46 -8.13 16 11 C 0.06 0.61 5.64 -1.68 -0.01 0.60 16 12 C 0.05 0.58 5.14 -62.31 -0.32 0.26 16 13 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 14 C -0.13 -1.31 6.85 -22.10 -0.15 -1.47 16 15 C 0.11 1.32 5.34 -60.98 -0.33 1.00 16 16 H 0.13 1.57 8.05 -51.93 -0.42 1.15 16 17 C 0.04 0.66 5.70 -0.06 0.00 0.66 16 18 N -0.49 -7.58 4.81 -216.50 -1.04 -8.62 16 19 C 0.04 0.60 4.07 -4.98 -0.02 0.58 16 20 C 0.44 10.39 7.67 -10.98 -0.08 10.31 16 21 O -0.57 -15.55 15.58 5.55 0.09 -15.47 16 22 N -0.57 -14.24 5.29 -10.96 -0.06 -14.30 16 23 C -0.30 -8.26 9.68 -14.94 -0.14 -8.40 16 24 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 27 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 29 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 30 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 31 H 0.04 0.26 8.09 -51.93 -0.42 -0.16 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.04 0.24 7.87 -51.93 -0.41 -0.17 16 34 H 0.06 0.39 7.87 -51.93 -0.41 -0.01 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 39 H 0.10 0.91 7.82 -51.93 -0.41 0.51 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.85 5.55 -51.93 -0.29 0.56 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 46 H 0.06 1.08 7.40 -51.93 -0.38 0.70 16 47 H 0.09 1.31 8.00 -51.93 -0.42 0.89 16 48 H 0.05 0.83 6.17 -51.93 -0.32 0.51 16 49 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 50 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 401.84 15.07 6.06 6.06 Total: -1.00 -34.04 401.84 -8.44 -42.47 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -8.35 Total: 9.33 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: -0.11 Total: 9.40 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.83 Total: -54.75 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.17 Total: -28.56 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.04 -8.44 -42.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494650459.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.229 kcal (2) G-P(sol) polarization free energy of solvation -34.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds