Wall clock time and date at job start Sat Apr 11 2020 05:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50706 * 119.99809 * 2 1 4 4 H 1.09002 * 110.67355 * 357.02889 * 3 2 1 5 5 O 1.44418 * 110.65023 * 234.06378 * 3 2 1 6 6 C 1.43747 * 107.00074 * 201.47892 * 5 3 2 7 7 C 1.54102 * 107.29177 * 26.48979 * 6 5 3 8 8 C 1.54811 * 104.18808 * 357.96745 * 7 6 5 9 9 H 1.09007 * 110.90773 * 97.35398 * 8 7 6 10 10 C 1.50701 * 110.90879 * 220.92110 * 8 7 6 11 11 O 1.21275 * 119.99632 * 115.67278 * 10 8 7 12 12 N 1.34769 * 119.99690 * 295.67354 * 10 8 7 13 13 C 1.46505 * 119.99686 * 179.97438 * 12 10 8 14 14 H 1.09002 * 109.47068 * 324.99893 * 13 12 10 15 15 C 1.53002 * 109.47411 * 84.99974 * 13 12 10 16 16 C 1.52997 * 109.47212 * 204.99833 * 13 12 10 17 17 C 1.53004 * 109.47236 * 64.99775 * 16 13 12 18 18 N 1.46901 * 109.47251 * 180.02562 * 17 16 13 19 19 C 1.46904 * 110.99756 * 180.02562 * 18 17 16 20 20 C 1.50702 * 109.46621 * 179.97438 * 19 18 17 21 21 O 1.21292 * 120.00351 * 359.97438 * 20 19 18 22 22 N 1.34777 * 119.99570 * 179.97438 * 20 19 18 23 23 C 1.37099 * 120.00191 * 180.02562 * 22 20 19 24 24 H 1.08007 * 119.99299 * 359.97438 * 23 22 20 25 25 C 1.38942 * 120.00151 * 179.97438 * 23 22 20 26 26 N 1.31406 * 120.00423 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 119.99797 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47380 * 59.99916 * 27 25 23 29 29 H 1.48498 * 109.47198 * 180.02562 * 27 25 23 30 30 H 1.48499 * 109.47005 * 300.00008 * 27 25 23 31 31 H 1.07998 * 119.99806 * 179.97438 * 1 2 3 32 32 H 1.08006 * 119.99909 * 0.02562 * 1 2 3 33 33 H 1.07992 * 120.00427 * 179.97438 * 2 1 3 34 34 H 1.08995 * 109.87939 * 267.06650 * 6 5 3 35 35 H 1.09002 * 110.00160 * 145.97876 * 6 5 3 36 36 H 1.09001 * 110.48815 * 239.29429 * 7 6 5 37 37 H 1.09005 * 110.48838 * 116.64117 * 7 6 5 38 38 H 0.97000 * 120.00680 * 359.97438 * 12 10 8 39 39 H 1.09000 * 109.46986 * 300.00092 * 15 13 12 40 40 H 1.09002 * 109.47075 * 59.99363 * 15 13 12 41 41 H 1.08996 * 109.47407 * 180.02562 * 15 13 12 42 42 H 1.09001 * 109.47630 * 184.99905 * 16 13 12 43 43 H 1.09004 * 109.47346 * 305.00035 * 16 13 12 44 44 H 1.09001 * 109.46917 * 300.00567 * 17 16 13 45 45 H 1.09004 * 109.46741 * 59.99889 * 17 16 13 46 46 H 1.00898 * 111.00315 * 56.04456 * 18 17 16 47 47 H 1.08996 * 109.46840 * 299.99325 * 19 18 17 48 48 H 1.08996 * 109.47271 * 59.99446 * 19 18 17 49 49 H 0.97008 * 120.00259 * 359.97438 * 22 20 19 50 50 H 0.97000 * 120.00305 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3739 2.1476 -0.0529 5 8 3.0050 1.3497 -1.0942 6 6 4.0011 2.3280 -0.7520 7 6 4.0587 2.4044 0.7861 8 6 2.9645 1.4153 1.2564 9 1 3.3977 0.4478 1.5103 10 6 2.1946 1.9797 2.4225 11 8 1.0131 2.2274 2.3061 12 7 2.8191 2.2091 3.5945 13 6 2.0708 2.7582 4.7280 14 1 1.3188 3.4575 4.3624 15 6 1.3834 1.6200 5.4850 16 6 3.0320 3.4884 5.6680 17 6 3.6256 4.7015 4.9489 18 7 4.5490 5.4022 5.8513 19 6 5.1389 6.5757 5.1933 20 6 6.0778 7.2676 6.1477 21 8 6.2392 6.8269 7.2661 22 7 6.7381 8.3762 5.7584 23 6 7.5927 9.0054 6.6264 24 1 7.7364 8.6129 7.6223 25 6 8.2738 10.1480 6.2249 26 7 8.0986 10.6258 5.0134 27 14 9.4376 11.0057 7.4079 28 1 10.5164 10.0672 7.8088 29 1 10.0345 12.1915 6.7426 30 1 8.6867 11.4404 8.6130 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5400 0.9354 -0.0004 33 1 1.8500 -0.9352 0.0004 34 1 3.7228 3.2991 -1.1611 35 1 4.9717 2.0248 -1.1445 36 1 3.8316 3.4146 1.1267 37 1 5.0379 2.0899 1.1473 38 1 3.7640 2.0106 3.6877 39 1 0.6986 1.0998 4.8153 40 1 2.1354 0.9207 5.8505 41 1 0.8263 2.0287 6.3280 42 1 2.4915 3.8202 6.5545 43 1 3.8347 2.8127 5.9636 44 1 4.1661 4.3697 4.0624 45 1 2.8229 5.3772 4.6534 46 1 5.2662 4.7787 6.1903 47 1 5.6896 6.2573 4.3082 48 1 4.3467 7.2645 4.9001 49 1 6.6093 8.7285 4.8638 50 1 8.5743 11.4232 4.7330 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497269242.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:27 Heat of formation + Delta-G solvation = -106.776037 kcal Electronic energy + Delta-G solvation = -29157.074691 eV Core-core repulsion = 24991.367844 eV Total energy + Delta-G solvation = -4165.706848 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.88851 -39.13684 -38.33171 -36.95323 -35.06207 -34.17101 -33.85819 -33.11213 -31.42615 -31.18553 -29.32594 -28.84667 -26.28157 -24.51013 -23.95442 -22.73982 -22.24472 -21.18559 -20.62257 -20.34126 -19.26308 -17.96164 -17.83228 -16.79070 -16.61319 -16.22668 -16.08542 -15.64903 -15.45240 -14.82587 -14.70888 -14.46926 -14.14278 -14.06259 -13.97480 -13.79616 -13.73914 -13.62116 -13.12123 -12.90108 -12.80120 -12.29757 -12.27936 -12.25165 -11.85920 -11.72698 -11.54728 -11.46455 -11.36453 -11.27805 -11.18470 -11.06800 -10.98680 -10.46198 -10.23733 -10.21139 -10.05040 -9.72736 -9.52578 -9.40228 -8.49820 -8.10431 -7.98724 -6.43991 -3.85077 1.84066 2.28364 2.77459 3.18288 3.24232 3.28491 3.59007 3.87639 3.99247 4.02574 4.14383 4.22354 4.33904 4.60151 4.67658 4.72919 4.74088 4.82402 4.89574 4.93984 4.97005 5.13452 5.19409 5.24436 5.29418 5.31702 5.34205 5.42086 5.46333 5.48368 5.51607 5.59856 5.69219 5.73355 5.85891 5.90550 5.95877 6.02046 6.22924 6.23710 6.25981 6.34225 6.52455 7.15042 7.16401 7.52660 7.61004 7.88407 8.03494 8.58541 9.15226 9.51486 10.02844 10.73604 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015850 B = 0.001917 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.090728 B =14599.502997 C =16017.671948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.158 4.158 3 C 0.126 3.874 4 H 0.088 0.912 5 O -0.369 6.369 6 C 0.048 3.952 7 C -0.148 4.148 8 C -0.140 4.140 9 H 0.112 0.888 10 C 0.527 3.473 11 O -0.533 6.533 12 N -0.722 5.722 13 C 0.142 3.858 14 H 0.090 0.910 15 C -0.162 4.162 16 C -0.125 4.125 17 C 0.060 3.940 18 N -0.669 5.669 19 C 0.051 3.949 20 C 0.440 3.560 21 O -0.584 6.584 22 N -0.563 5.563 23 C -0.301 4.301 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.931 3.069 28 H -0.274 1.274 29 H -0.284 1.284 30 H -0.273 1.273 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.400 0.600 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.025 0.975 45 H 0.070 0.930 46 H 0.348 0.652 47 H 0.042 0.958 48 H 0.085 0.915 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.479 -20.808 -10.898 26.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.176 4.176 3 C 0.069 3.931 4 H 0.105 0.895 5 O -0.288 6.288 6 C -0.029 4.029 7 C -0.186 4.186 8 C -0.161 4.161 9 H 0.130 0.870 10 C 0.313 3.687 11 O -0.409 6.409 12 N -0.373 5.373 13 C 0.038 3.962 14 H 0.109 0.891 15 C -0.220 4.220 16 C -0.163 4.163 17 C -0.069 4.069 18 N -0.302 5.302 19 C -0.081 4.081 20 C 0.225 3.775 21 O -0.468 6.468 22 N -0.200 5.200 23 C -0.430 4.430 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.131 0.869 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.234 0.766 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.043 0.957 45 H 0.089 0.911 46 H 0.167 0.833 47 H 0.060 0.940 48 H 0.103 0.897 49 H 0.225 0.775 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.640 -20.483 -10.194 26.139 hybrid contribution 1.758 0.356 -0.366 1.831 sum -10.882 -20.127 -10.560 25.200 Atomic orbital electron populations 1.23921 0.95730 1.02355 0.97195 1.22556 0.95740 0.96800 1.02464 1.21995 0.90492 0.97197 0.83422 0.89463 1.88941 1.38459 1.60403 1.41046 1.23147 0.92982 0.93055 0.93749 1.22974 0.98994 1.00016 0.96592 1.22913 0.97129 1.01200 0.94893 0.86977 1.20135 0.87563 0.77676 0.83356 1.90710 1.15530 1.51390 1.83281 1.46153 1.13594 1.65801 1.11794 1.21013 0.94253 0.95286 0.85659 0.89149 1.22152 1.00763 0.98589 1.00486 1.21887 0.99099 0.96437 0.98921 1.21960 0.96470 0.94945 0.93565 1.60044 1.22852 1.09795 1.37477 1.21661 0.97598 0.93632 0.95237 1.19806 0.84931 0.83800 0.88940 1.90520 1.67814 1.66970 1.21503 1.41864 1.38920 1.23501 1.15682 1.19658 1.18895 1.07162 0.97307 0.87959 1.25267 0.98688 0.97140 0.96839 1.69600 1.43241 1.23791 1.17663 0.85908 0.80011 0.78453 0.79790 1.19917 1.20964 1.19863 0.87942 0.87966 0.86892 0.91825 0.89244 0.89837 0.89287 0.76576 0.92190 0.92445 0.91312 0.89044 0.91321 0.95726 0.91111 0.83272 0.94019 0.89660 0.77462 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 14.33 29.01 0.42 -0.85 16 2 C -0.16 -1.36 9.24 -36.02 -0.33 -1.69 16 3 C 0.13 1.17 2.76 -26.83 -0.07 1.10 16 4 H 0.09 0.93 7.19 -51.93 -0.37 0.55 16 5 O -0.37 -3.66 11.21 -35.23 -0.39 -4.06 16 6 C 0.05 0.35 7.70 37.73 0.29 0.64 16 7 C -0.15 -0.94 6.58 -25.20 -0.17 -1.11 16 8 C -0.14 -1.05 2.94 -89.76 -0.26 -1.31 16 9 H 0.11 0.69 8.05 -51.93 -0.42 0.27 16 10 C 0.53 4.88 7.00 -10.99 -0.08 4.81 16 11 O -0.53 -6.73 15.42 5.56 0.09 -6.64 16 12 N -0.72 -5.44 4.52 -53.80 -0.24 -5.69 16 13 C 0.14 1.20 2.57 -67.93 -0.17 1.03 16 14 H 0.09 0.93 7.58 -51.93 -0.39 0.53 16 15 C -0.16 -1.27 9.48 37.16 0.35 -0.92 16 16 C -0.13 -1.11 5.01 -26.73 -0.13 -1.25 16 17 C 0.06 0.67 5.57 -3.82 -0.02 0.65 16 18 N -0.67 -10.24 6.12 -115.05 -0.70 -10.94 16 19 C 0.05 0.89 6.17 -4.97 -0.03 0.85 16 20 C 0.44 10.27 7.82 -10.98 -0.09 10.19 16 21 O -0.58 -15.70 15.78 5.55 0.09 -15.62 16 22 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 23 C -0.30 -8.34 9.68 -14.94 -0.14 -8.49 16 24 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 25 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 26 N -0.90 -24.37 13.05 55.49 0.72 -23.64 16 27 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 29 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 30 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 31 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.10 0.89 7.87 -52.48 -0.41 0.47 16 33 H 0.11 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.58 7.85 -51.93 -0.41 0.17 16 37 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.40 2.26 8.60 -40.82 -0.35 1.91 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.02 0.25 7.75 -51.93 -0.40 -0.15 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.35 5.40 8.43 -39.29 -0.33 5.07 16 47 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 49 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 50 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 416.99 15.07 6.28 6.28 Total: -1.00 -33.23 416.99 -8.20 -41.44 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -8.42 Total: 13.06 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -0.54 Total: 4.15 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.28 Total: -54.50 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.22 Total: -26.32 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.23 -8.20 -41.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497269242.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.338 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds