Wall clock time and date at job start Sat Apr 11 2020 05:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46875 * 2 1 4 4 C 1.52999 * 109.47524 * 120.00190 * 2 1 3 5 5 N 1.46894 * 109.47102 * 175.00050 * 4 2 1 6 6 C 1.46906 * 110.99839 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47183 * 179.97438 * 6 5 4 8 8 O 1.21291 * 120.00035 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00124 * 180.02562 * 7 6 5 10 10 C 1.37100 * 120.00312 * 180.02562 * 9 7 6 11 11 H 1.08005 * 119.99509 * 359.97438 * 10 9 7 12 12 C 1.38946 * 120.00420 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99739 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00230 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46748 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46717 * 120.00216 * 14 12 10 17 17 H 1.48500 * 109.46962 * 239.99814 * 14 12 10 18 18 N 1.46499 * 109.47022 * 240.00416 * 2 1 3 19 19 C 1.34784 * 119.99971 * 84.99732 * 18 2 1 20 20 O 1.21274 * 119.99897 * 359.72827 * 19 18 2 21 21 C 1.50695 * 119.99635 * 179.97438 * 19 18 2 22 22 H 1.08997 * 110.75223 * 62.01991 * 21 19 18 23 23 C 1.55308 * 110.85071 * 298.54370 * 21 19 18 24 24 C 1.54942 * 100.94530 * 207.67717 * 23 21 19 25 25 O 1.43648 * 105.13389 * 36.44747 * 24 23 21 26 26 C 1.43235 * 109.97317 * 335.56884 * 25 24 23 27 27 H 1.09002 * 109.83128 * 121.22315 * 26 25 24 28 28 C 1.52999 * 109.83615 * 242.19842 * 26 25 24 29 29 C 1.52999 * 117.49733 * 6.88060 * 28 26 25 30 30 C 1.52996 * 117.49758 * 298.22093 * 28 26 25 31 31 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47314 * 299.99734 * 1 2 3 33 33 H 1.09001 * 109.47831 * 59.99682 * 1 2 3 34 34 H 1.09001 * 109.46859 * 295.00018 * 4 2 1 35 35 H 1.09000 * 109.46643 * 54.99720 * 4 2 1 36 36 H 1.00893 * 111.00437 * 303.95334 * 5 4 2 37 37 H 1.08994 * 109.47413 * 300.00384 * 6 5 4 38 38 H 1.09006 * 109.46926 * 60.00347 * 6 5 4 39 39 H 0.97006 * 119.99916 * 359.97438 * 9 7 6 40 40 H 0.97006 * 120.00205 * 179.97438 * 13 12 10 41 41 H 0.96999 * 119.99984 * 264.99579 * 18 2 1 42 42 H 1.09001 * 111.12398 * 325.60100 * 23 21 19 43 43 H 1.09001 * 111.12115 * 89.71721 * 23 21 19 44 44 H 1.08996 * 110.30992 * 155.35755 * 24 23 21 45 45 H 1.09002 * 110.31269 * 277.53744 * 24 23 21 46 46 H 1.08996 * 115.55419 * 152.54691 * 28 26 25 47 47 H 1.09007 * 117.49436 * 0.02562 * 29 28 26 48 48 H 1.08994 * 117.50369 * 145.01905 * 29 28 26 49 49 H 1.09000 * 117.50027 * 214.97405 * 30 28 26 50 50 H 1.09000 * 117.49893 * 359.97438 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5040 -0.8266 1.1903 6 6 4.0305 -1.5148 2.3766 7 6 5.5317 -1.6044 2.2805 8 8 6.1065 -1.1410 1.3182 9 7 6.2355 -2.2003 3.2633 10 6 7.6013 -2.2813 3.1762 11 1 8.1132 -1.8679 2.3197 12 6 8.3270 -2.8952 4.1897 13 7 7.7042 -3.3978 5.2320 14 14 10.1879 -3.0062 4.0706 15 1 10.6420 -2.3688 2.8086 16 1 10.8006 -2.3048 5.2273 17 1 10.6004 -4.4328 4.0817 18 7 2.0183 -0.6905 -1.1962 19 6 2.1469 -0.0181 -2.3572 20 8 1.8538 1.1574 -2.4128 21 6 2.6498 -0.7283 -3.5875 22 1 1.9728 -1.5336 -3.8724 23 6 4.0887 -1.2686 -3.3646 24 6 4.6328 -1.2637 -4.8153 25 8 4.0606 -0.0965 -5.4265 26 6 2.8497 0.2652 -4.7523 27 1 2.9323 1.2798 -4.3627 28 6 1.6689 0.1738 -5.7209 29 6 1.9367 -0.4144 -7.1077 30 6 1.6893 1.0877 -6.9477 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3635 0.5139 -0.8899 34 1 1.7517 -0.1583 2.1369 35 1 1.6054 -1.7198 1.2950 36 1 3.7996 -1.2882 0.3432 37 1 3.7559 -0.9571 3.2719 38 1 3.6097 -2.5189 2.4307 39 1 5.7757 -2.5713 4.0328 40 1 8.2107 -3.8267 5.9394 41 1 2.2490 -1.6317 -1.1527 42 1 4.6653 -0.5990 -2.7264 43 1 4.0699 -2.2785 -2.9548 44 1 5.7205 -1.1939 -4.8112 45 1 4.3125 -2.1624 -5.3426 46 1 0.7013 -0.0343 -5.2643 47 1 2.9542 -0.7366 -7.3298 48 1 1.1453 -1.0091 -7.5636 49 1 0.7350 1.4806 -7.2985 50 1 2.5437 1.7544 -7.0645 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498074359.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:30 Heat of formation + Delta-G solvation = -96.903645 kcal Electronic energy + Delta-G solvation = -29842.512088 eV Core-core repulsion = 25677.233339 eV Total energy + Delta-G solvation = -4165.278748 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.82504 -39.20418 -38.32282 -36.74862 -36.51031 -34.32932 -33.71041 -32.85880 -31.27083 -30.78096 -29.47628 -27.65893 -25.16878 -24.51973 -23.30839 -22.86158 -22.52306 -21.22445 -20.47755 -20.15594 -19.30316 -18.03502 -17.81990 -17.03753 -16.42676 -16.23466 -15.61763 -15.49231 -15.37116 -15.00451 -14.79963 -14.56615 -14.43173 -13.95931 -13.85248 -13.58317 -13.51204 -13.13738 -12.94808 -12.68993 -12.55790 -12.35276 -11.99369 -11.86288 -11.72152 -11.66151 -11.65051 -11.53450 -11.50323 -11.28308 -11.12287 -11.02916 -10.47124 -10.37418 -10.26693 -10.26412 -9.93776 -9.62727 -9.56156 -9.24190 -8.52694 -8.14920 -8.00592 -6.45917 -3.86819 2.47569 2.92091 3.13405 3.24468 3.31596 3.53906 3.61145 3.85287 3.99501 4.16062 4.22975 4.35028 4.45983 4.72397 4.76221 4.78371 4.83269 4.94554 4.98566 5.01299 5.11351 5.12990 5.17019 5.22517 5.31385 5.37100 5.49209 5.50196 5.53388 5.54691 5.57520 5.70877 5.72528 5.78521 5.87484 5.91355 5.93845 5.95381 6.01656 6.03822 6.20517 6.35585 6.81518 7.08375 7.30324 7.51512 7.53393 8.02014 8.06219 8.56438 9.13739 9.49558 10.00612 10.71771 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013412 B = 0.002360 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.156231 B =11859.098646 C =13621.055248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.098 0.902 4 C 0.050 3.950 5 N -0.666 5.666 6 C 0.050 3.950 7 C 0.439 3.561 8 O -0.583 6.583 9 N -0.563 5.563 10 C -0.299 4.299 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.282 1.282 18 N -0.720 5.720 19 C 0.531 3.469 20 O -0.533 6.533 21 C -0.139 4.139 22 H 0.111 0.889 23 C -0.148 4.148 24 C 0.053 3.947 25 O -0.373 6.373 26 C 0.126 3.874 27 H 0.104 0.896 28 C -0.168 4.168 29 C -0.170 4.170 30 C -0.171 4.171 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.032 0.968 36 H 0.347 0.653 37 H 0.087 0.913 38 H 0.043 0.957 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.397 0.603 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.062 0.938 46 H 0.108 0.892 47 H 0.104 0.896 48 H 0.088 0.912 49 H 0.091 0.909 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.316 0.715 -16.018 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.116 0.884 4 C -0.080 4.080 5 N -0.300 5.300 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.467 6.467 9 N -0.200 5.200 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.208 1.208 18 N -0.371 5.371 19 C 0.317 3.683 20 O -0.409 6.409 21 C -0.161 4.161 22 H 0.129 0.871 23 C -0.186 4.186 24 C -0.023 4.023 25 O -0.292 6.292 26 C 0.068 3.932 27 H 0.122 0.878 28 C -0.186 4.186 29 C -0.207 4.207 30 C -0.208 4.208 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.050 0.950 36 H 0.167 0.833 37 H 0.106 0.894 38 H 0.061 0.939 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.231 0.769 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.080 0.920 46 H 0.126 0.874 47 H 0.122 0.878 48 H 0.106 0.894 49 H 0.109 0.891 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.858 2.528 -16.441 22.982 hybrid contribution 0.289 -1.998 0.759 2.157 sum -15.569 0.530 -15.682 22.105 Atomic orbital electron populations 1.22145 0.95006 1.02042 1.02802 1.21059 0.93427 0.98544 0.83065 0.88356 1.22308 0.88846 0.98971 0.97854 1.60001 1.07463 1.57555 1.04931 1.21698 0.95202 0.96929 0.94456 1.19786 0.88038 0.84324 0.85375 1.90528 1.71104 1.51547 1.33492 1.41875 1.07455 1.50797 1.19846 1.19748 0.81474 1.35042 1.06564 0.87864 1.25271 1.00740 0.96771 0.95197 1.69619 1.36650 1.38620 1.09374 0.85800 0.82178 0.77881 0.78496 1.19192 1.20707 1.20754 1.45990 1.67470 1.13874 1.09788 1.20080 0.77089 0.87035 0.84128 1.90706 1.49630 1.15807 1.84791 1.22870 0.99229 0.99634 0.94342 0.87084 1.23322 0.93375 1.03236 0.98697 1.23361 0.99133 0.88613 0.91207 1.88426 1.38006 1.45900 1.56880 1.22071 0.83520 0.98945 0.88645 0.87834 1.22683 0.99130 1.06657 0.90180 1.22910 1.03179 0.96120 0.98527 1.22894 1.02974 0.93490 1.01449 0.92574 0.91329 0.91909 0.89409 0.95000 0.83347 0.89440 0.93880 0.77471 0.91897 0.76872 0.88897 0.88970 0.89108 0.91992 0.87427 0.87812 0.89367 0.89085 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.48 37.16 0.35 -1.05 16 2 C 0.14 1.53 2.88 -67.93 -0.20 1.33 16 3 H 0.10 1.32 7.58 -51.92 -0.39 0.92 16 4 C 0.05 0.54 5.30 -3.83 -0.02 0.52 16 5 N -0.67 -10.00 6.12 -115.06 -0.70 -10.70 16 6 C 0.05 0.83 6.17 -4.97 -0.03 0.80 16 7 C 0.44 10.05 7.82 -10.99 -0.09 9.96 16 8 O -0.58 -15.41 15.78 5.55 0.09 -15.32 16 9 N -0.56 -13.93 5.29 -10.96 -0.06 -13.99 16 10 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 11 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -24.15 13.05 55.50 0.72 -23.43 16 14 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 18 N -0.72 -7.20 4.30 -53.81 -0.23 -7.43 16 19 C 0.53 6.22 7.12 -10.98 -0.08 6.14 16 20 O -0.53 -8.16 15.14 5.56 0.08 -8.07 16 21 C -0.14 -1.32 2.90 -89.82 -0.26 -1.58 16 22 H 0.11 0.83 7.86 -51.93 -0.41 0.42 16 23 C -0.15 -1.39 6.56 -24.48 -0.16 -1.55 16 24 C 0.05 0.49 7.78 38.18 0.30 0.79 16 25 O -0.37 -4.31 9.40 -35.23 -0.33 -4.64 16 26 C 0.13 1.40 3.30 -26.00 -0.09 1.31 16 27 H 0.10 1.40 6.87 -51.93 -0.36 1.04 16 28 C -0.17 -1.63 5.56 -90.62 -0.50 -2.13 16 29 C -0.17 -1.49 9.88 -26.69 -0.26 -1.75 16 30 C -0.17 -1.58 10.22 -26.70 -0.27 -1.85 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.35 5.25 7.28 -39.30 -0.29 4.96 16 37 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 40 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 41 H 0.40 3.20 8.15 -40.82 -0.33 2.87 16 42 H 0.09 1.08 8.03 -51.93 -0.42 0.67 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.11 0.98 8.12 -51.93 -0.42 0.56 16 47 H 0.10 0.98 7.06 -51.92 -0.37 0.61 16 48 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 410.27 15.07 6.18 6.18 Total: -1.00 -32.92 410.27 -9.13 -42.06 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: -8.31 Total: 16.50 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -1.55 Total: 3.08 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.27 Total: -55.55 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.16 Total: -28.03 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.92 -9.13 -42.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498074359.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.848 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds