Wall clock time and date at job start Sat Apr 11 2020 05:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.57725 * 2 1 4 4 C 1.53094 * 109.52188 * 120.16025 * 2 1 3 5 5 O 1.42903 * 109.41465 * 177.51537 * 4 2 1 6 6 C 1.42911 * 114.09840 * 298.84031 * 5 4 2 7 7 C 1.53089 * 109.41095 * 61.15642 * 6 5 4 8 8 C 1.53178 * 109.16968 * 302.39146 * 7 6 5 9 9 H 1.08994 * 109.62075 * 176.89347 * 8 7 6 10 10 C 1.50696 * 109.54377 * 297.11765 * 8 7 6 11 11 O 1.21287 * 120.00143 * 119.54967 * 10 8 7 12 12 N 1.34782 * 120.00190 * 299.55593 * 10 8 7 13 13 C 1.46491 * 120.00258 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.47297 * 186.02817 * 13 12 10 15 15 N 1.46899 * 115.54957 * 36.97458 * 14 13 12 16 16 C 1.46902 * 111.00221 * 64.44057 * 15 14 13 17 17 C 1.50691 * 109.47469 * 174.37711 * 16 15 14 18 18 O 1.21293 * 120.00174 * 359.97438 * 17 16 15 19 19 N 1.34782 * 120.00235 * 179.97438 * 17 16 15 20 20 C 1.37099 * 120.00041 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99994 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00115 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00441 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 119.99870 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47153 * 89.99998 * 24 22 20 26 26 H 1.48502 * 109.47181 * 210.00216 * 24 22 20 27 27 H 1.48501 * 109.46994 * 329.99869 * 24 22 20 28 28 C 1.52992 * 117.50117 * 251.30176 * 14 13 12 29 29 C 1.53006 * 117.49914 * 182.64119 * 14 13 12 30 30 H 1.09005 * 109.47237 * 180.15199 * 1 2 3 31 31 H 1.08996 * 109.47182 * 300.15460 * 1 2 3 32 32 H 1.09002 * 109.46647 * 60.15825 * 1 2 3 33 33 H 1.09000 * 109.48042 * 297.49533 * 4 2 1 34 34 H 1.08995 * 109.47896 * 57.53379 * 4 2 1 35 35 H 1.08998 * 109.48025 * 181.14141 * 6 5 4 36 36 H 1.08998 * 109.47808 * 301.18009 * 6 5 4 37 37 H 1.09008 * 109.52048 * 182.48828 * 7 6 5 38 38 H 1.09000 * 109.52503 * 62.30530 * 7 6 5 39 39 H 0.96998 * 119.99796 * 359.97438 * 12 10 8 40 40 H 1.08998 * 109.47216 * 66.02803 * 13 12 10 41 41 H 1.08999 * 109.47228 * 306.02819 * 13 12 10 42 42 H 1.00899 * 110.99683 * 300.48991 * 15 14 13 43 43 H 1.09005 * 109.46757 * 294.37794 * 16 15 14 44 44 H 1.08997 * 109.47000 * 54.37067 * 16 15 14 45 45 H 0.96996 * 119.99613 * 0.02562 * 19 17 16 46 46 H 0.96996 * 120.00073 * 179.97438 * 23 22 20 47 47 H 1.09001 * 117.49736 * 0.02562 * 28 14 13 48 48 H 1.09002 * 117.49775 * 145.01789 * 28 14 13 49 49 H 1.09000 * 117.49592 * 214.98015 * 29 14 13 50 50 H 1.08994 * 117.50005 * 359.97438 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7250 1.2476 5 8 3.4694 -0.7743 1.2163 6 6 4.0044 -1.4817 0.0956 7 6 3.5716 -0.7871 -1.1982 8 6 2.0419 -0.7253 -1.2484 9 1 1.7266 -0.1833 -2.1399 10 6 1.4817 -2.1238 -1.2841 11 8 0.7452 -2.5049 -0.3990 12 7 1.7991 -2.9512 -2.2996 13 6 1.2541 -4.3105 -2.3347 14 6 1.8824 -5.0821 -3.4970 15 7 3.2999 -4.7955 -3.7550 16 6 4.1362 -5.2132 -2.6218 17 6 5.5896 -5.0322 -2.9764 18 8 5.8985 -4.5984 -4.0662 19 7 6.5463 -5.3524 -2.0827 20 6 7.8686 -5.1882 -2.4056 21 1 8.1436 -4.8019 -3.3759 22 6 8.8549 -5.5187 -1.4844 23 7 10.1223 -5.3609 -1.7937 24 14 8.3793 -6.1875 0.1937 25 1 8.2915 -7.6685 0.1296 26 1 9.4062 -5.7952 1.1921 27 1 7.0621 -5.6303 0.5934 28 6 0.9931 -5.3902 -4.7031 29 6 1.3947 -6.5115 -3.7416 30 1 -0.3634 -1.0277 0.0027 31 1 -0.3633 0.5162 0.8886 32 1 -0.3633 0.5114 -0.8914 33 1 1.7159 -0.1886 2.1389 34 1 1.6431 -1.7393 1.2676 35 1 5.0926 -1.4904 0.1571 36 1 3.6315 -2.5059 0.1006 37 1 3.9416 -1.3501 -2.0551 38 1 3.9780 0.2240 -1.2224 39 1 2.3879 -2.6463 -3.0077 40 1 0.1736 -4.2653 -2.4705 41 1 1.4816 -4.8174 -1.3970 42 1 3.4387 -3.8187 -3.9661 43 1 3.8965 -4.6048 -1.7497 44 1 3.9451 -6.2624 -2.3965 45 1 6.2993 -5.6996 -1.2114 46 1 10.8108 -5.5913 -1.1504 47 1 -0.0395 -5.0429 -4.6689 48 1 1.4599 -5.3806 -5.6881 49 1 2.1256 -7.2391 -4.0944 50 1 0.6267 -6.9024 -3.0744 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499339010.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:43 Heat of formation + Delta-G solvation = -84.707059 kcal Electronic energy + Delta-G solvation = -31489.899038 eV Core-core repulsion = 27325.149174 eV Total energy + Delta-G solvation = -4164.749865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.12618 -39.29439 -38.29631 -37.77231 -34.69780 -34.41594 -34.12773 -32.92732 -32.22409 -31.67839 -27.99851 -26.97091 -26.63358 -25.34530 -23.98653 -22.68829 -22.53990 -21.71970 -20.17948 -19.47362 -19.40655 -18.37960 -17.23260 -16.90799 -16.33664 -16.26070 -16.03350 -15.52732 -15.42848 -15.05426 -14.79130 -14.58033 -14.39895 -14.30283 -14.02527 -13.97335 -13.32361 -13.18153 -12.97311 -12.64136 -12.60877 -12.56061 -12.48605 -12.19009 -12.12287 -11.77543 -11.67775 -11.57441 -11.27777 -11.19229 -10.81394 -10.75463 -10.63617 -10.61995 -10.15367 -10.00873 -9.79681 -9.61364 -9.36608 -9.26743 -8.76029 -8.33207 -8.22110 -6.35002 -3.86749 2.35974 2.81902 3.00605 3.05069 3.13873 3.55538 3.66928 3.81426 3.82005 4.07239 4.26100 4.35908 4.42706 4.48121 4.66358 4.72993 4.76485 4.83794 5.00740 5.08036 5.17396 5.27033 5.31246 5.32151 5.38826 5.41700 5.45791 5.47877 5.52135 5.52525 5.63944 5.70549 5.71449 5.72827 5.80749 5.83804 5.86658 5.92814 5.96325 6.03260 6.08434 6.34498 6.92666 7.12633 7.15959 7.34414 7.53285 7.96501 8.09447 8.54861 8.90541 9.37887 9.76981 10.77888 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009052 B = 0.004183 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.394108 B = 6692.760380 C = 8841.961338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.102 4.102 3 H 0.082 0.918 4 C 0.053 3.947 5 O -0.382 6.382 6 C 0.058 3.942 7 C -0.149 4.149 8 C -0.108 4.108 9 H 0.101 0.899 10 C 0.521 3.479 11 O -0.531 6.531 12 N -0.726 5.726 13 C 0.131 3.869 14 C 0.012 3.988 15 N -0.621 5.621 16 C 0.049 3.951 17 C 0.449 3.551 18 O -0.564 6.564 19 N -0.588 5.588 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.044 3.956 23 N -0.879 5.879 24 Si 0.877 3.123 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.270 1.270 28 C -0.152 4.152 29 C -0.150 4.150 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.047 0.953 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.399 0.601 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.346 0.654 43 H 0.045 0.955 44 H 0.089 0.911 45 H 0.370 0.630 46 H 0.274 0.726 47 H 0.095 0.905 48 H 0.105 0.895 49 H 0.106 0.894 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.359 6.478 2.421 22.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.121 4.121 3 H 0.100 0.900 4 C -0.024 4.024 5 O -0.301 6.301 6 C -0.019 4.019 7 C -0.187 4.187 8 C -0.130 4.130 9 H 0.119 0.881 10 C 0.308 3.692 11 O -0.409 6.409 12 N -0.380 5.380 13 C 0.005 3.995 14 C -0.081 4.081 15 N -0.253 5.253 16 C -0.083 4.083 17 C 0.234 3.766 18 O -0.446 6.446 19 N -0.227 5.227 20 C -0.435 4.435 21 H 0.137 0.863 22 C -0.159 4.159 23 N -0.519 5.519 24 Si 0.703 3.297 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.195 1.195 28 C -0.190 4.190 29 C -0.188 4.188 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.235 0.765 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.167 0.833 43 H 0.063 0.937 44 H 0.107 0.893 45 H 0.203 0.797 46 H 0.085 0.915 47 H 0.113 0.887 48 H 0.123 0.877 49 H 0.124 0.876 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.191 5.983 2.152 22.124 hybrid contribution -0.169 0.181 1.400 1.422 sum -21.359 6.164 3.552 22.513 Atomic orbital electron populations 1.22090 0.93982 1.04750 1.01128 1.21532 0.96983 0.99449 0.94140 0.89993 1.22896 0.80758 1.01693 0.97033 1.87934 1.20546 1.76232 1.45343 1.22592 0.99890 0.94333 0.85052 1.22231 0.93020 1.03644 0.99765 1.21491 0.96891 0.93363 1.01214 0.88073 1.20610 0.80348 0.87172 0.81044 1.90565 1.36685 1.76660 1.36986 1.46055 1.51291 1.14042 1.26580 1.21356 0.97921 0.81646 0.98623 1.21699 0.89358 0.99980 0.97080 1.59930 1.01092 1.25664 1.38651 1.21695 0.92886 1.01775 0.91967 1.19645 0.86044 0.84770 0.86120 1.90571 1.82533 1.48897 1.22610 1.42204 1.06852 1.58996 1.14685 1.19412 0.78819 1.41486 1.03739 0.86252 1.25022 0.95009 0.97638 0.98271 1.69614 0.99134 1.47182 1.35971 0.86715 0.78706 0.79989 0.84258 1.19567 1.20083 1.19506 1.23167 0.98557 1.01964 0.95300 1.23064 1.02756 0.90740 1.02272 0.89152 0.92814 0.93224 0.89307 0.90679 0.87960 0.93448 0.90071 0.89443 0.76495 0.91001 0.90780 0.83283 0.93701 0.89303 0.79740 0.91549 0.88682 0.87708 0.87567 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 8.86 37.16 0.33 -1.18 16 2 C -0.10 -1.01 2.67 -90.48 -0.24 -1.25 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 4 C 0.05 0.62 5.86 37.21 0.22 0.84 16 5 O -0.38 -5.22 10.77 -35.23 -0.38 -5.60 16 6 C 0.06 0.74 6.62 37.20 0.25 0.99 16 7 C -0.15 -1.53 5.57 -26.59 -0.15 -1.68 16 8 C -0.11 -1.04 2.61 -91.59 -0.24 -1.28 16 9 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 10 C 0.52 5.78 5.52 -10.98 -0.06 5.72 16 11 O -0.53 -7.13 11.34 5.55 0.06 -7.07 16 12 N -0.73 -7.23 5.18 -60.30 -0.31 -7.55 16 13 C 0.13 1.32 5.15 -4.05 -0.02 1.29 16 14 C 0.01 0.12 2.05 -131.60 -0.27 -0.15 16 15 N -0.62 -8.48 5.96 -101.22 -0.60 -9.08 16 16 C 0.05 0.76 5.92 -4.98 -0.03 0.73 16 17 C 0.45 9.64 7.83 -10.99 -0.09 9.56 16 18 O -0.56 -14.36 15.90 5.55 0.09 -14.27 16 19 N -0.59 -13.53 5.09 -10.97 -0.06 -13.58 16 20 C -0.31 -8.43 10.16 -14.93 -0.15 -8.58 16 21 H 0.12 3.77 7.39 -52.48 -0.39 3.38 16 22 C 0.04 1.18 5.50 -17.47 -0.10 1.09 16 23 N -0.88 -25.32 13.96 55.50 0.77 -24.54 16 24 Si 0.88 19.22 27.74 -169.99 -4.71 14.50 16 25 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 28 C -0.15 -1.37 10.11 -26.70 -0.27 -1.64 16 29 C -0.15 -1.43 10.16 -26.69 -0.27 -1.70 16 30 H 0.09 1.02 5.27 -51.93 -0.27 0.75 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.00 5.80 -51.93 -0.30 0.70 16 35 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.05 0.64 7.38 -51.93 -0.38 0.26 16 37 H 0.08 0.82 7.52 -51.92 -0.39 0.43 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.40 3.68 6.19 -40.82 -0.25 3.43 16 40 H 0.07 0.69 7.92 -51.93 -0.41 0.27 16 41 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 42 H 0.35 4.67 6.94 -39.29 -0.27 4.39 16 43 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 44 H 0.09 1.29 8.11 -51.93 -0.42 0.87 16 45 H 0.37 7.59 5.76 -40.82 -0.24 7.36 16 46 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 47 H 0.09 0.70 8.06 -51.93 -0.42 0.28 16 48 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 393.11 15.07 5.92 5.92 Total: -1.00 -32.48 393.11 -8.27 -40.75 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: -7.96 Total: 17.76 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -1.09 Total: 2.75 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.20 Total: -54.75 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.23 Total: -26.94 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.71 Total: 14.50 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.48 -8.27 -40.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499339010.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.961 kcal (2) G-P(sol) polarization free energy of solvation -32.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds