Wall clock time and date at job start Sat Apr 11 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46770 * 2 1 4 4 C 1.50692 * 109.46876 * 120.00345 * 2 1 3 5 5 O 1.21281 * 120.00328 * 119.99959 * 4 2 1 6 6 N 1.34777 * 120.00205 * 299.99379 * 4 2 1 7 7 C 1.46498 * 119.99806 * 0.02562 * 6 4 2 8 8 C 1.46505 * 120.00098 * 180.02562 * 6 4 2 9 9 C 1.53939 * 113.73073 * 218.76861 * 8 6 4 10 10 N 1.48194 * 86.09846 * 221.95958 * 9 8 6 11 11 C 1.46903 * 111.07083 * 137.52150 * 10 9 8 12 12 C 1.50703 * 109.46818 * 90.56841 * 11 10 9 13 13 O 1.21291 * 120.00202 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00004 * 180.02562 * 12 11 10 15 15 C 1.37094 * 120.00305 * 179.97438 * 14 12 11 16 16 H 1.07996 * 119.99965 * 359.97438 * 15 14 12 17 17 C 1.38949 * 119.99946 * 179.97438 * 15 14 12 18 18 N 1.31408 * 120.00469 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99685 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46998 * 89.99906 * 19 17 15 21 21 H 1.48504 * 109.47326 * 209.99809 * 19 17 15 22 22 H 1.48501 * 109.47447 * 329.99974 * 19 17 15 23 23 C 1.47957 * 90.79987 * 24.60212 * 10 9 8 24 24 C 1.52999 * 109.46952 * 240.00120 * 2 1 3 25 25 H 1.08997 * 110.41729 * 187.30947 * 24 2 1 26 26 C 1.54487 * 110.37340 * 64.99950 * 24 2 1 27 27 C 1.54505 * 104.06179 * 217.18979 * 26 24 2 28 28 C 1.54472 * 104.06681 * 0.02562 * 27 26 24 29 29 O 1.44421 * 110.37396 * 309.62262 * 24 2 1 30 30 H 1.08992 * 109.47447 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46747 * 299.99857 * 1 2 3 32 32 H 1.08997 * 109.47203 * 59.99599 * 1 2 3 33 33 H 1.09004 * 109.47579 * 89.99671 * 7 6 4 34 34 H 1.09007 * 109.47106 * 209.99698 * 7 6 4 35 35 H 1.09000 * 109.46956 * 329.99396 * 7 6 4 36 36 H 1.08991 * 112.93766 * 350.33685 * 8 6 4 37 37 H 1.08996 * 113.75940 * 336.23974 * 9 8 6 38 38 H 1.08997 * 113.75540 * 107.61068 * 9 8 6 39 39 H 1.08997 * 109.46937 * 210.56562 * 11 10 9 40 40 H 1.08997 * 109.47119 * 330.57048 * 11 10 9 41 41 H 0.97007 * 119.99997 * 359.97438 * 14 12 11 42 42 H 0.96993 * 120.00108 * 180.02562 * 18 17 15 43 43 H 1.09000 * 113.76460 * 221.08396 * 23 10 9 44 44 H 1.09003 * 113.85851 * 89.73050 * 23 10 9 45 45 H 1.09003 * 110.50578 * 335.83854 * 26 24 2 46 46 H 1.08999 * 110.50826 * 98.40390 * 26 24 2 47 47 H 1.09003 * 110.50916 * 118.64999 * 27 26 24 48 48 H 1.09005 * 110.51002 * 241.21544 * 27 26 24 49 49 H 1.08999 * 110.37330 * 142.80840 * 28 27 26 50 50 H 1.09004 * 110.37299 * 265.14702 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 0.8643 0.9408 2.5890 8 6 2.1956 -0.9404 3.6507 9 6 1.1639 -1.0097 4.7911 10 7 2.2934 -0.6916 5.6961 11 6 1.8963 0.2947 6.7098 12 6 1.3747 -0.4206 7.9294 13 8 1.3369 -1.6327 7.9517 14 7 0.9491 0.2865 8.9949 15 6 0.4741 -0.3642 10.1041 16 1 0.4405 -1.4434 10.1240 17 6 0.0359 0.3649 11.2028 18 7 0.0772 1.6781 11.1789 19 14 -0.6120 -0.5217 12.7139 20 1 0.5093 -0.7876 13.6506 21 1 -1.6290 0.3256 13.3871 22 1 -1.2314 -1.8082 12.3056 23 6 3.0277 -0.0449 4.5863 24 6 2.0400 -0.7212 -1.2493 25 1 3.1220 -0.8442 -1.2023 26 6 1.6422 0.0600 -2.5213 27 6 1.3102 -1.0432 -3.5508 28 6 1.5459 -2.3603 -2.7790 29 8 1.3936 -2.0052 -1.3876 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.1837 0.6427 2.6225 34 1 1.1220 1.4664 3.5085 35 1 1.0275 1.5996 1.7360 36 1 2.6663 -1.8975 3.4262 37 1 0.4050 -0.2287 4.7447 38 1 0.7440 -2.0039 4.9436 39 1 2.7597 0.9003 6.9853 40 1 1.1155 0.9382 6.3044 41 1 0.9789 1.2559 8.9769 42 1 -0.2284 2.1870 11.9460 43 1 4.0942 -0.2697 4.5754 44 1 2.8163 1.0190 4.4786 45 1 0.7666 0.6803 -2.3302 46 1 2.4742 0.6722 -2.8693 47 1 0.2703 -0.9682 -3.8689 48 1 1.9772 -0.9767 -4.4104 49 1 0.8034 -3.1055 -3.0644 50 1 2.5522 -2.7351 -2.9663 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499744468.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:58 Heat of formation + Delta-G solvation = -66.113633 kcal Electronic energy + Delta-G solvation = -29944.825052 eV Core-core repulsion = 25780.881459 eV Total energy + Delta-G solvation = -4163.943593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.00042 -39.96935 -38.75905 -37.64770 -35.31975 -33.98371 -33.73632 -32.27838 -31.25190 -29.98929 -28.30559 -27.30336 -26.10510 -25.80956 -24.96385 -23.67014 -22.30347 -21.29243 -19.83908 -19.35280 -18.94431 -17.89020 -17.29671 -16.98946 -16.47223 -16.12498 -16.02985 -15.76768 -15.54328 -14.96425 -14.64997 -14.52054 -14.24366 -14.09191 -13.90541 -13.79109 -13.33754 -13.06707 -12.86004 -12.67674 -12.58890 -12.43275 -12.20479 -12.14139 -11.92262 -11.85931 -11.61801 -11.49780 -11.42236 -11.34108 -11.07750 -10.95294 -10.88874 -10.63653 -10.37875 -10.19526 -9.97402 -9.77930 -9.48099 -8.77392 -8.73991 -8.17239 -7.94014 -6.39931 -3.80430 2.48965 2.72961 3.19313 3.27619 3.33821 3.55852 3.91553 3.96446 4.13189 4.15588 4.24778 4.41958 4.51970 4.53654 4.62575 4.69206 4.74124 4.81368 4.91819 4.99403 5.00550 5.10253 5.18097 5.21507 5.27087 5.28796 5.34646 5.35573 5.38419 5.41421 5.49427 5.54611 5.61638 5.65253 5.67625 5.73226 5.75976 5.92347 5.96915 6.11910 6.25425 6.37560 6.55600 6.58654 7.11993 7.23744 7.57152 8.04942 8.08308 8.64435 9.20739 9.56736 10.09471 10.78021 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032991 B = 0.001835 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.503737 B =15256.300044 C =15372.843247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 H 0.106 0.894 4 C 0.521 3.479 5 O -0.525 6.525 6 N -0.607 5.607 7 C 0.071 3.929 8 C 0.118 3.882 9 C 0.003 3.997 10 N -0.444 5.444 11 C 0.014 3.986 12 C 0.446 3.554 13 O -0.573 6.573 14 N -0.568 5.568 15 C -0.297 4.297 16 H 0.103 0.897 17 C 0.021 3.979 18 N -0.904 5.904 19 Si 0.930 3.070 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.270 1.270 23 C -0.013 4.013 24 C 0.095 3.905 25 H 0.076 0.924 26 C -0.155 4.155 27 C -0.154 4.154 28 C 0.043 3.957 29 O -0.355 6.355 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.129 0.871 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.391 0.609 42 H 0.271 0.729 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.090 0.910 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.461 4.615 -29.259 29.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.125 4.125 3 H 0.124 0.876 4 C 0.308 3.692 5 O -0.400 6.400 6 N -0.341 5.341 7 C -0.072 4.072 8 C 0.014 3.986 9 C -0.127 4.127 10 N -0.167 5.167 11 C -0.119 4.119 12 C 0.231 3.769 13 O -0.456 6.456 14 N -0.205 5.205 15 C -0.427 4.427 16 H 0.120 0.880 17 C -0.180 4.180 18 N -0.546 5.546 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.194 1.194 23 C -0.143 4.143 24 C 0.037 3.963 25 H 0.094 0.906 26 C -0.192 4.192 27 C -0.192 4.192 28 C -0.034 4.034 29 O -0.273 6.273 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.147 0.853 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.224 0.776 42 H 0.081 0.919 43 H 0.112 0.888 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.108 0.892 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.946 2.753 -28.576 28.774 hybrid contribution -0.655 1.335 0.387 1.537 sum 1.291 4.088 -28.189 28.513 Atomic orbital electron populations 1.21994 0.92121 1.04055 1.02922 1.21380 0.98804 1.00006 0.92358 0.87581 1.20513 0.79939 0.84527 0.84180 1.90722 1.37431 1.25693 1.86188 1.47894 1.51390 1.29062 1.05742 1.21983 0.94866 0.87262 1.03051 1.23150 0.95610 0.97646 0.82225 1.24457 0.94210 1.03605 0.90414 1.68377 1.12533 1.30739 1.05033 1.22455 1.00476 0.94294 0.94635 1.19675 0.84357 0.88238 0.84627 1.90533 1.59122 1.13677 1.82289 1.41869 1.56101 1.09018 1.13515 1.19699 1.37655 0.93636 0.91683 0.87960 1.25244 0.97848 0.95510 0.99402 1.69606 1.48013 1.05023 1.31912 0.85863 0.78508 0.79072 0.80880 1.20412 1.20969 1.19443 1.24485 1.00934 0.97695 0.91192 1.22709 0.97221 0.83695 0.92715 0.90638 1.23077 1.02550 0.98584 0.95016 1.22923 1.02602 0.95027 0.98674 1.23375 1.01402 0.96770 0.81858 1.89222 1.77384 1.35375 1.25359 0.91030 0.91010 0.91534 0.91786 0.90949 0.90643 0.85323 0.90995 0.88433 0.89338 0.92566 0.77598 0.91948 0.88802 0.91169 0.90137 0.90452 0.90715 0.90643 0.89200 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.40 37.16 0.31 -0.78 16 2 C -0.10 -0.86 1.78 -91.77 -0.16 -1.02 16 3 H 0.11 0.60 7.40 -51.93 -0.38 0.22 16 4 C 0.52 6.25 7.01 -10.99 -0.08 6.17 16 5 O -0.53 -8.49 15.09 -1.01 -0.02 -8.51 16 6 N -0.61 -6.57 3.09 -175.27 -0.54 -7.11 16 7 C 0.07 0.53 7.39 59.85 0.44 0.97 16 8 C 0.12 1.55 4.39 -69.62 -0.31 1.24 16 9 C 0.00 0.04 7.41 -2.63 -0.02 0.02 16 10 N -0.44 -7.51 5.65 -239.67 -1.35 -8.87 16 11 C 0.01 0.24 5.28 -4.97 -0.03 0.21 16 12 C 0.45 10.73 7.83 -10.98 -0.09 10.65 16 13 O -0.57 -16.10 16.01 5.55 0.09 -16.01 16 14 N -0.57 -14.51 5.29 -10.97 -0.06 -14.56 16 15 C -0.30 -8.38 9.68 -14.94 -0.14 -8.53 16 16 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 17 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 18 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 19 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 C -0.01 -0.17 7.46 -2.76 -0.02 -0.19 16 24 C 0.09 0.84 2.45 -25.95 -0.06 0.78 16 25 H 0.08 0.76 7.91 -51.93 -0.41 0.35 16 26 C -0.15 -0.89 6.47 -25.16 -0.16 -1.06 16 27 C -0.15 -0.86 7.09 -25.17 -0.18 -1.04 16 28 C 0.04 0.33 7.63 37.93 0.29 0.62 16 29 O -0.35 -3.99 9.92 -41.79 -0.41 -4.40 16 30 H 0.07 0.68 7.50 -51.93 -0.39 0.29 16 31 H 0.07 0.43 4.53 -51.93 -0.24 0.20 16 32 H 0.07 0.36 6.39 -51.93 -0.33 0.03 16 33 H 0.06 0.44 6.95 -51.93 -0.36 0.08 16 34 H 0.07 0.53 6.35 -51.92 -0.33 0.20 16 35 H 0.07 0.37 6.01 -51.93 -0.31 0.06 16 36 H 0.13 1.96 7.22 -51.93 -0.37 1.59 16 37 H 0.07 0.95 6.17 -51.93 -0.32 0.63 16 38 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 39 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 40 H 0.06 0.86 7.39 -51.93 -0.38 0.48 16 41 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.07 0.76 6.63 -51.93 -0.34 0.41 16 45 H 0.08 0.39 6.11 -51.93 -0.32 0.08 16 46 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 389.75 15.07 5.87 5.87 Total: -1.00 -35.63 389.75 -8.73 -44.35 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -7.71 Total: 8.38 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -0.30 Total: 8.53 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -1.23 Total: -54.45 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.34 Total: -28.92 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.63 -8.73 -44.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499744468.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.760 kcal (2) G-P(sol) polarization free energy of solvation -35.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds