Wall clock time and date at job start Sat Apr 11 2020 05:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50691 * 120.00048 * 2 1 4 4 H 1.09002 * 110.67935 * 357.03710 * 3 2 1 5 5 O 1.44386 * 110.61680 * 234.07167 * 3 2 1 6 6 C 1.43748 * 106.97398 * 201.43898 * 5 3 2 7 7 C 1.54104 * 107.29522 * 26.51517 * 6 5 3 8 8 C 1.54814 * 104.18571 * 357.96944 * 7 6 5 9 9 H 1.08995 * 110.90964 * 97.35401 * 8 7 6 10 10 C 1.50700 * 110.90723 * 220.92224 * 8 7 6 11 11 O 1.21283 * 120.00045 * 118.54736 * 10 8 7 12 12 N 1.34778 * 120.00038 * 298.54630 * 10 8 7 13 13 C 1.46504 * 119.99841 * 179.97438 * 12 10 8 14 14 C 1.53008 * 109.46562 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46604 * 180.02562 * 14 13 12 16 16 H 1.08999 * 109.47110 * 304.99620 * 15 14 13 17 17 C 1.52998 * 109.46678 * 185.00162 * 15 14 13 18 18 N 1.46896 * 109.47670 * 64.99687 * 15 14 13 19 19 C 1.46899 * 111.00338 * 204.99709 * 18 15 14 20 20 C 1.50698 * 109.46987 * 179.97438 * 19 18 15 21 21 O 1.21293 * 120.00006 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99538 * 179.97438 * 20 19 18 23 23 C 1.37104 * 119.99773 * 179.72591 * 22 20 19 24 24 H 1.08002 * 119.99671 * 0.27660 * 23 22 20 25 25 C 1.38950 * 120.00030 * 180.27703 * 23 22 20 26 26 N 1.31414 * 119.99926 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 119.99969 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47459 * 59.99812 * 27 25 23 29 29 H 1.48502 * 109.47317 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.47211 * 300.00250 * 27 25 23 31 31 H 1.07999 * 120.00043 * 359.97438 * 1 2 3 32 32 H 1.08001 * 120.00504 * 179.97438 * 1 2 3 33 33 H 1.08006 * 119.99411 * 180.02562 * 2 1 3 34 34 H 1.08998 * 109.87948 * 267.09137 * 6 5 3 35 35 H 1.09000 * 110.00405 * 146.00975 * 6 5 3 36 36 H 1.08998 * 110.48768 * 239.29536 * 7 6 5 37 37 H 1.08997 * 110.49111 * 116.64323 * 7 6 5 38 38 H 0.96999 * 119.99770 * 0.02562 * 12 10 8 39 39 H 1.08993 * 109.46790 * 60.00364 * 13 12 10 40 40 H 1.08990 * 109.47054 * 299.99810 * 13 12 10 41 41 H 1.08997 * 109.47255 * 59.99881 * 14 13 12 42 42 H 1.08999 * 109.46976 * 299.99686 * 14 13 12 43 43 H 1.09004 * 109.47330 * 299.99449 * 17 15 14 44 44 H 1.08998 * 109.47322 * 59.99792 * 17 15 14 45 45 H 1.09009 * 109.46815 * 179.97438 * 17 15 14 46 46 H 1.00900 * 110.99693 * 81.04236 * 18 15 14 47 47 H 1.09003 * 109.46477 * 60.00383 * 19 18 15 48 48 H 1.08993 * 109.47002 * 300.00709 * 19 18 15 49 49 H 0.97001 * 120.00485 * 0.02562 * 22 20 19 50 50 H 0.96999 * 119.99863 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3739 2.1476 -0.0527 5 8 3.0044 1.3488 -1.0943 6 6 4.0002 2.3276 -0.7526 7 6 4.0582 2.4044 0.7854 8 6 2.9646 1.4150 1.2563 9 1 3.3984 0.4479 1.5104 10 6 2.1948 1.9793 2.4225 11 8 1.0025 2.1776 2.3231 12 7 2.8314 2.2636 3.5760 13 6 2.0832 2.8127 4.7095 14 6 3.0350 3.0436 5.8850 15 6 2.2534 3.6165 7.0690 16 1 1.7251 4.5165 6.7543 17 6 3.2234 3.9638 8.2001 18 7 1.2839 2.6204 7.5439 19 6 0.1560 3.2675 8.2273 20 6 -0.8157 2.2165 8.6987 21 8 -0.5905 1.0437 8.4865 22 7 -1.9343 2.5798 9.3569 23 6 -2.8211 1.6240 9.7808 24 1 -2.6211 0.5797 9.5912 25 6 -3.9773 1.9988 10.4542 26 7 -4.2209 3.2695 10.6845 27 14 -5.1852 0.6965 11.0324 28 1 -4.5041 -0.2267 11.9752 29 1 -6.3280 1.3511 11.7185 30 1 -5.6841 -0.0702 9.8625 31 1 -0.5400 0.9353 0.0004 32 1 -0.5401 -0.9353 -0.0004 33 1 1.8499 -0.9354 -0.0004 34 1 3.7213 3.2985 -1.1619 35 1 4.9708 2.0249 -1.1454 36 1 3.8308 3.4146 1.1258 37 1 5.0376 2.0906 1.1465 38 1 3.7851 2.1053 3.6553 39 1 1.3040 2.1102 5.0050 40 1 1.6279 3.7596 4.4197 41 1 3.8140 3.7463 5.5891 42 1 3.4907 2.0968 6.1749 43 1 3.7518 3.0638 8.5149 44 1 3.9428 4.7030 7.8477 45 1 2.6666 4.3724 9.0435 46 1 1.7279 1.9406 8.1429 47 1 -0.3476 3.9438 7.5366 48 1 0.5255 3.8316 9.0837 49 1 -2.1141 3.5177 9.5268 50 1 -5.0278 3.5311 11.1549 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001503479339.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:00 Heat of formation + Delta-G solvation = -133.175749 kcal Electronic energy + Delta-G solvation = -29054.449727 eV Core-core repulsion = 24887.598103 eV Total energy + Delta-G solvation = -4166.851625 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.50175 -40.24080 -39.62917 -38.27593 -36.09954 -35.76295 -34.80558 -33.59478 -33.28448 -32.36071 -29.96549 -29.26139 -27.95930 -25.87468 -25.13148 -23.57156 -23.06318 -21.90923 -21.22298 -21.08315 -20.85623 -19.92505 -18.56210 -17.74173 -17.35625 -17.03444 -16.89195 -16.77458 -16.56779 -16.34781 -15.98735 -15.79319 -15.53664 -15.23225 -14.82126 -14.57363 -14.49653 -14.45342 -14.20188 -14.01079 -13.60860 -13.51300 -13.47041 -13.10022 -12.91508 -12.83680 -12.65255 -12.45547 -12.44493 -12.25901 -12.17368 -12.09757 -12.00338 -11.87747 -11.72576 -11.51267 -10.94653 -10.72870 -10.40083 -10.34958 -10.06908 -10.02734 -9.24267 -8.47731 -5.96573 1.18699 1.38399 1.40097 1.51184 1.58625 2.04667 2.12975 2.28181 2.94932 2.97771 3.19463 3.44714 3.52810 3.55298 3.76484 3.88777 4.02443 4.08231 4.16419 4.22509 4.24663 4.29246 4.35248 4.40287 4.45826 4.49712 4.56709 4.61226 4.72053 4.76379 4.82492 4.86678 4.91250 4.96830 5.04096 5.06213 5.20975 5.26602 5.32710 5.39322 5.49018 5.58043 5.71572 5.88687 5.91455 6.14513 6.47202 6.56159 6.59117 7.11361 7.26046 7.55265 8.10758 8.69469 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012390 B = 0.002080 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.383130 B =13457.125054 C =15281.163509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.167 4.167 3 C 0.124 3.876 4 H 0.062 0.938 5 O -0.387 6.387 6 C 0.038 3.962 7 C -0.137 4.137 8 C -0.132 4.132 9 H 0.132 0.868 10 C 0.516 3.484 11 O -0.581 6.581 12 N -0.711 5.711 13 C 0.128 3.872 14 C -0.102 4.102 15 C 0.082 3.918 16 H 0.082 0.918 17 C -0.176 4.176 18 N -0.678 5.678 19 C 0.067 3.933 20 C 0.436 3.564 21 O -0.623 6.623 22 N -0.574 5.574 23 C -0.335 4.335 24 H 0.078 0.922 25 C -0.014 4.014 26 N -0.920 5.920 27 Si 0.993 3.007 28 H -0.270 1.270 29 H -0.269 1.269 30 H -0.274 1.274 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.129 0.871 34 H 0.063 0.937 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.122 0.878 38 H 0.417 0.583 39 H 0.044 0.956 40 H 0.051 0.949 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.048 0.952 46 H 0.344 0.656 47 H 0.097 0.903 48 H 0.068 0.932 49 H 0.396 0.604 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.168 3.593 -17.230 29.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.185 4.185 3 C 0.066 3.934 4 H 0.080 0.920 5 O -0.307 6.307 6 C -0.038 4.038 7 C -0.175 4.175 8 C -0.153 4.153 9 H 0.150 0.850 10 C 0.303 3.697 11 O -0.461 6.461 12 N -0.363 5.363 13 C 0.004 3.996 14 C -0.140 4.140 15 C -0.028 4.028 16 H 0.100 0.900 17 C -0.234 4.234 18 N -0.311 5.311 19 C -0.066 4.066 20 C 0.224 3.776 21 O -0.510 6.510 22 N -0.212 5.212 23 C -0.464 4.464 24 H 0.096 0.904 25 C -0.214 4.214 26 N -0.561 5.561 27 Si 0.816 3.184 28 H -0.195 1.195 29 H -0.194 1.194 30 H -0.199 1.199 31 H 0.106 0.894 32 H 0.136 0.864 33 H 0.147 0.853 34 H 0.081 0.919 35 H 0.130 0.870 36 H 0.101 0.899 37 H 0.140 0.860 38 H 0.254 0.746 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.121 0.879 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.164 0.836 47 H 0.115 0.885 48 H 0.085 0.915 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 21.982 2.914 -18.117 28.634 hybrid contribution -0.564 0.216 1.609 1.719 sum 21.418 3.130 -16.508 27.222 Atomic orbital electron populations 1.24037 0.96179 1.02539 0.97366 1.22763 0.95854 0.97496 1.02362 1.21884 0.90618 0.96350 0.84548 0.91999 1.88919 1.39080 1.61237 1.41432 1.23397 0.93176 0.92582 0.94640 1.22998 0.99518 0.99255 0.95683 1.22874 0.97002 1.02658 0.92770 0.85035 1.20678 0.87321 0.77263 0.84431 1.90738 1.17280 1.54448 1.83589 1.45881 1.13189 1.64968 1.12299 1.21192 0.95126 0.97907 0.85395 1.21688 0.97204 1.02790 0.92320 1.21649 0.92016 0.94184 0.94907 0.90005 1.22430 0.99985 1.02707 0.98312 1.60209 1.10182 1.16241 1.44418 1.21522 0.92182 0.94267 0.98593 1.20964 0.84111 0.90473 0.82058 1.90487 1.77686 1.21213 1.61613 1.41946 1.19146 1.09672 1.50404 1.19622 1.01362 0.90454 1.34988 0.90433 1.26054 0.99256 0.99183 0.96887 1.69666 1.28245 1.16341 1.41846 0.84991 0.77311 0.77634 0.78414 1.19504 1.19359 1.19943 0.89409 0.86445 0.85318 0.91913 0.87048 0.89934 0.85974 0.74611 0.93763 0.93048 0.87882 0.90641 0.92084 0.89723 0.93309 0.83640 0.88465 0.91461 0.77008 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 14.33 67.78 0.97 -2.77 16 2 C -0.17 -3.61 9.24 25.64 0.24 -3.37 16 3 C 0.12 2.62 2.73 30.53 0.08 2.71 16 4 H 0.06 1.59 7.25 -2.39 -0.02 1.57 16 5 O -0.39 -7.66 11.21 -148.98 -1.67 -9.33 16 6 C 0.04 0.44 7.70 72.36 0.56 1.00 16 7 C -0.14 -1.23 6.55 31.59 0.21 -1.02 16 8 C -0.13 -2.09 2.94 -10.24 -0.03 -2.12 16 9 H 0.13 1.63 8.05 -2.39 -0.02 1.61 16 10 C 0.52 11.79 7.05 87.66 0.62 12.41 16 11 O -0.58 -19.57 15.80 -3.04 -0.05 -19.62 16 12 N -0.71 -12.40 5.50 -463.05 -2.55 -14.95 16 13 C 0.13 2.87 5.56 86.38 0.48 3.35 16 14 C -0.10 -1.58 5.01 30.60 0.15 -1.43 16 15 C 0.08 1.63 2.59 44.92 0.12 1.75 16 16 H 0.08 1.61 7.80 -2.39 -0.02 1.59 16 17 C -0.18 -2.76 9.16 71.98 0.66 -2.10 16 18 N -0.68 -20.34 5.33 -495.60 -2.64 -22.98 16 19 C 0.07 2.29 5.97 85.56 0.51 2.80 16 20 C 0.44 21.21 7.82 87.66 0.69 21.90 16 21 O -0.62 -35.29 15.78 -3.07 -0.05 -35.34 16 22 N -0.57 -30.21 5.29 -306.98 -1.62 -31.83 16 23 C -0.33 -19.47 9.68 84.04 0.81 -18.66 16 24 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 25 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 26 N -0.92 -50.53 13.05 21.66 0.28 -50.25 16 27 Si 0.99 43.86 29.55 68.60 2.03 45.89 16 28 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 29 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 30 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 31 H 0.09 2.21 7.87 -2.91 -0.02 2.19 16 32 H 0.12 2.24 8.06 -2.91 -0.02 2.21 16 33 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.08 0.76 7.85 -2.39 -0.02 0.74 16 37 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.42 3.83 8.47 -92.71 -0.79 3.04 16 39 H 0.04 1.42 7.75 -2.39 -0.02 1.41 16 40 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.06 0.95 8.13 -2.38 -0.02 0.93 16 44 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.05 0.88 7.45 -2.38 -0.02 0.86 16 46 H 0.34 10.87 8.17 -89.69 -0.73 10.14 16 47 H 0.10 3.13 8.06 -2.39 -0.02 3.11 16 48 H 0.07 2.00 7.44 -2.39 -0.02 1.98 16 49 H 0.40 19.75 7.90 -92.71 -0.73 19.02 16 50 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -79.14 415.40 -1.03 -80.18 By element: Atomic # 1 Polarization: 45.39 SS G_CDS: -1.29 Total: 44.09 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 6.53 Total: 14.14 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -6.53 Total: -120.01 kcal Atomic # 8 Polarization: -62.52 SS G_CDS: -1.77 Total: -64.29 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -79.14 -1.03 -80.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503479339.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.000 kcal (2) G-P(sol) polarization free energy of solvation -79.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds