Wall clock time and date at job start Sat Apr 11 2020 05:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46788 * 2 1 4 4 N 1.46503 * 109.47686 * 239.99775 * 2 1 3 5 5 C 1.34775 * 119.99450 * 84.99609 * 4 2 1 6 6 O 1.21280 * 120.00906 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99456 * 180.02562 * 5 4 2 8 8 H 1.09002 * 109.52402 * 299.86874 * 7 5 4 9 9 C 1.53315 * 109.50819 * 179.71609 * 7 5 4 10 10 C 1.53174 * 108.96863 * 183.14194 * 9 7 5 11 11 C 1.53089 * 109.21786 * 56.94931 * 10 9 7 12 12 O 1.42904 * 109.41454 * 302.36429 * 11 10 9 13 13 C 1.42896 * 114.09952 * 61.15380 * 12 11 10 14 14 C 1.53000 * 109.47474 * 119.99540 * 2 1 3 15 15 C 1.53934 * 113.73346 * 281.87807 * 14 2 1 16 16 N 1.48185 * 86.10100 * 221.95326 * 15 14 2 17 17 C 1.46900 * 111.07119 * 137.52255 * 16 15 14 18 18 C 1.50697 * 109.47355 * 90.56799 * 17 16 15 19 19 O 1.21293 * 120.00141 * 359.97438 * 18 17 16 20 20 N 1.34781 * 119.99854 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99491 * 179.97438 * 20 18 17 22 22 H 1.07991 * 120.00475 * 0.02562 * 21 20 18 23 23 C 1.38945 * 119.99542 * 180.02562 * 21 20 18 24 24 N 1.31421 * 120.00405 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00213 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46812 * 89.99350 * 25 23 21 27 27 H 1.48493 * 109.47494 * 209.99707 * 25 23 21 28 28 H 1.48501 * 109.46904 * 330.00096 * 25 23 21 29 29 C 1.47954 * 90.79830 * 24.59992 * 16 15 14 30 30 H 1.09007 * 109.46765 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47574 * 300.08275 * 1 2 3 32 32 H 1.09002 * 109.47233 * 60.09068 * 1 2 3 33 33 H 0.96995 * 119.99654 * 265.00247 * 4 2 1 34 34 H 1.09000 * 109.62530 * 63.26278 * 9 7 5 35 35 H 1.09000 * 109.52956 * 302.95668 * 9 7 5 36 36 H 1.08999 * 109.52109 * 297.01040 * 10 9 7 37 37 H 1.08998 * 109.52147 * 176.89276 * 10 9 7 38 38 H 1.09008 * 109.47592 * 62.34530 * 11 10 9 39 39 H 1.08997 * 109.47941 * 182.37683 * 11 10 9 40 40 H 1.09004 * 109.47890 * 58.82318 * 13 12 11 41 41 H 1.08994 * 109.48149 * 178.84750 * 13 12 11 42 42 H 1.08999 * 112.93496 * 53.44060 * 14 2 1 43 43 H 1.08999 * 113.75962 * 336.23585 * 15 14 2 44 44 H 1.09005 * 113.75832 * 107.59891 * 15 14 2 45 45 H 1.09002 * 109.47182 * 210.56707 * 17 16 15 46 46 H 1.08995 * 109.46932 * 330.56068 * 17 16 15 47 47 H 0.96997 * 120.00108 * 359.97438 * 20 18 17 48 48 H 0.97002 * 119.99969 * 179.97438 * 24 23 21 49 49 H 1.09001 * 113.76051 * 221.08219 * 29 16 15 50 50 H 1.08999 * 113.75852 * 89.72137 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8590 1.1586 -2.4116 7 6 2.6490 -0.7288 -3.5876 8 1 3.6492 -1.1196 -3.4001 9 6 2.6943 0.2538 -4.7636 10 6 3.1304 -0.4985 -6.0245 11 6 2.1677 -1.6621 -6.2754 12 8 2.1506 -2.5194 -5.1322 13 6 1.7049 -1.8835 -3.9326 14 6 2.0400 -0.7211 1.2493 15 6 1.9731 0.1328 2.5283 16 7 3.3108 -0.4200 2.8460 17 6 4.2037 0.6240 3.3665 18 6 4.0861 0.6831 4.8677 19 8 3.3324 -0.0701 5.4471 20 7 4.8187 1.5729 5.5665 21 6 4.7113 1.6269 6.9322 22 1 4.0402 0.9563 7.4481 23 6 5.4660 2.5445 7.6526 24 7 6.2832 3.3603 7.0249 25 14 5.3194 2.6188 9.5134 26 1 6.3106 1.6977 10.1251 27 1 5.5809 4.0055 9.9756 28 1 3.9498 2.2119 9.9185 29 6 3.5700 -0.6726 1.4115 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5151 0.8892 32 1 -0.3634 0.5124 -0.8908 33 1 2.2491 -1.6318 -1.1525 34 1 3.4076 1.0494 -4.5486 35 1 1.7041 0.6822 -4.9188 36 1 4.1405 -0.8845 -5.8873 37 1 3.1125 0.1796 -6.8777 38 1 1.1651 -1.2726 -6.4527 39 1 2.4983 -2.2258 -7.1477 40 1 0.6964 -1.4969 -4.0793 41 1 1.7020 -2.6068 -3.1173 42 1 1.6179 -1.7193 1.3656 43 1 1.9750 1.2064 2.3401 44 1 1.1923 -0.1771 3.2229 45 1 5.2327 0.3923 3.0914 46 1 3.9223 1.5876 2.9417 47 1 5.4218 2.1749 5.1031 48 1 6.8098 4.0011 7.5278 49 1 4.0628 -1.6249 1.2153 50 1 4.0400 0.1649 0.8959 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506587755.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:06 Heat of formation + Delta-G solvation = -94.384847 kcal Electronic energy + Delta-G solvation = -29469.995277 eV Core-core repulsion = 25304.825752 eV Total energy + Delta-G solvation = -4165.169525 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.90256 -40.05014 -38.86384 -37.74280 -35.53599 -34.03585 -33.85900 -32.45976 -31.28074 -30.85920 -29.41968 -26.16339 -25.79268 -25.48717 -24.94017 -24.02663 -22.12874 -21.07610 -20.44579 -19.64848 -19.18256 -17.91433 -17.58655 -16.81410 -16.72570 -16.29721 -15.98686 -15.57915 -15.47352 -15.20761 -14.82727 -14.60402 -14.31381 -14.12784 -14.07106 -13.71776 -13.61126 -13.35066 -13.08867 -12.93788 -12.66583 -12.56293 -12.31156 -12.10646 -11.94467 -11.61364 -11.55775 -11.44864 -11.29867 -11.06729 -10.98463 -10.87808 -10.84788 -10.59010 -10.37744 -10.20492 -10.18018 -9.88496 -9.47561 -9.38224 -8.70635 -8.14969 -7.93333 -6.39095 -3.79870 2.30231 2.77511 3.19415 3.27636 3.33586 3.34013 3.89218 3.95240 4.10678 4.22828 4.25075 4.31376 4.38233 4.44570 4.52880 4.61729 4.76133 4.87866 4.95610 5.03377 5.07202 5.11800 5.16971 5.19813 5.25559 5.27784 5.36700 5.40650 5.44515 5.47406 5.51248 5.65527 5.66367 5.68992 5.72475 5.76243 5.82106 5.92685 5.98486 6.17600 6.26525 6.30009 6.58734 6.61649 7.16874 7.19517 7.57471 7.91318 8.08829 8.65053 9.21102 9.57664 10.10141 10.78805 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026852 B = 0.001777 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.515456 B =15754.941549 C =16114.935722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 H 0.089 0.911 4 N -0.722 5.722 5 C 0.520 3.480 6 O -0.535 6.535 7 C -0.145 4.145 8 H 0.107 0.893 9 C -0.102 4.102 10 C -0.157 4.157 11 C 0.056 3.944 12 O -0.377 6.377 13 C 0.073 3.927 14 C -0.126 4.126 15 C 0.023 3.977 16 N -0.449 5.449 17 C 0.010 3.990 18 C 0.447 3.553 19 O -0.576 6.576 20 N -0.568 5.568 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.005 3.995 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.401 0.599 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.057 0.943 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.087 0.913 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.649 -8.394 -27.292 29.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.107 0.893 4 N -0.373 5.373 5 C 0.306 3.694 6 O -0.411 6.411 7 C -0.167 4.167 8 H 0.125 0.875 9 C -0.140 4.140 10 C -0.195 4.195 11 C -0.020 4.020 12 O -0.295 6.295 13 C -0.005 4.005 14 C -0.146 4.146 15 C -0.106 4.106 16 N -0.171 5.171 17 C -0.122 4.122 18 C 0.232 3.768 19 O -0.459 6.459 20 N -0.205 5.205 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.195 1.195 29 C -0.124 4.124 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.235 0.765 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.114 0.886 40 H 0.075 0.925 41 H 0.117 0.883 42 H 0.123 0.877 43 H 0.088 0.912 44 H 0.113 0.887 45 H 0.105 0.895 46 H 0.075 0.925 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.106 0.894 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.109 -8.602 -26.355 28.885 hybrid contribution 0.609 1.149 0.249 1.324 sum -7.500 -7.453 -26.106 28.166 Atomic orbital electron populations 1.22133 0.94853 1.02259 1.02703 1.21076 0.94353 0.97176 0.82943 0.89343 1.46114 1.67385 1.14135 1.09677 1.20413 0.77447 0.87280 0.84281 1.90721 1.49531 1.15932 1.84962 1.22068 1.02411 0.97953 0.94224 0.87480 1.21429 1.03314 0.97011 0.92269 1.22232 1.00576 0.98081 0.98589 1.22660 0.98708 0.92048 0.88602 1.87973 1.87549 1.36872 1.17107 1.22494 0.95867 0.93994 0.88101 1.23345 0.96486 1.00991 0.93736 1.23953 0.94592 0.97405 0.94679 1.68406 1.01806 1.33525 1.13332 1.22476 0.98674 0.94450 0.96603 1.19689 0.85030 0.84313 0.87793 1.90517 1.41052 1.43586 1.70731 1.41884 1.38460 1.32708 1.07440 1.19694 1.23345 1.18109 0.81581 0.87965 1.25257 0.96164 0.95979 1.00640 1.69618 1.26486 1.21751 1.36632 0.85858 0.78861 0.77292 0.82273 1.20423 1.20960 1.19452 1.23967 0.95513 1.02098 0.90844 0.92308 0.91137 0.92285 0.76513 0.90533 0.90910 0.90799 0.90339 0.92957 0.88582 0.92497 0.88316 0.87692 0.91243 0.88743 0.89507 0.92473 0.77572 0.91931 0.89423 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.44 37.16 0.35 -1.06 16 2 C 0.15 1.39 2.29 -67.93 -0.16 1.23 16 3 H 0.09 1.02 7.48 -51.93 -0.39 0.63 16 4 N -0.72 -5.50 4.85 -53.81 -0.26 -5.76 16 5 C 0.52 4.83 7.12 -10.99 -0.08 4.75 16 6 O -0.54 -7.13 15.63 5.56 0.09 -7.05 16 7 C -0.14 -1.00 2.73 -91.56 -0.25 -1.25 16 8 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 9 C -0.10 -0.74 4.63 -26.48 -0.12 -0.86 16 10 C -0.16 -0.85 6.13 -26.60 -0.16 -1.01 16 11 C 0.06 0.31 6.84 37.20 0.25 0.57 16 12 O -0.38 -2.82 10.77 -35.23 -0.38 -3.20 16 13 C 0.07 0.45 6.00 37.20 0.22 0.67 16 14 C -0.13 -1.28 3.35 -89.69 -0.30 -1.58 16 15 C 0.02 0.32 7.42 -2.64 -0.02 0.30 16 16 N -0.45 -7.31 5.65 -239.55 -1.35 -8.66 16 17 C 0.01 0.18 5.28 -4.98 -0.03 0.15 16 18 C 0.45 10.81 7.83 -10.98 -0.09 10.73 16 19 O -0.58 -16.04 16.01 5.55 0.09 -15.95 16 20 N -0.57 -14.69 5.29 -10.97 -0.06 -14.75 16 21 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.91 13.05 55.50 0.72 -24.18 16 25 Si 0.93 21.33 29.55 -169.99 -5.02 16.30 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 C 0.00 0.06 7.39 -2.77 -0.02 0.04 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.40 2.10 8.07 -40.82 -0.33 1.77 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.59 8.03 -51.93 -0.42 0.17 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.05 0.27 8.14 -51.92 -0.42 -0.16 16 39 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 0.45 7.64 -51.93 -0.40 0.05 16 42 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 0.94 7.38 -51.93 -0.38 0.55 16 44 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 46 H 0.06 0.94 7.39 -51.93 -0.38 0.55 16 47 H 0.39 9.68 7.90 -40.82 -0.32 9.35 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 49 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 50 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 LS Contribution 404.85 15.07 6.10 6.10 Total: -1.00 -34.73 404.85 -9.16 -43.89 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -8.45 Total: 8.69 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -0.63 Total: 4.56 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.95 Total: -53.35 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.20 Total: -26.20 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.73 -9.16 -43.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506587755.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.494 kcal (2) G-P(sol) polarization free energy of solvation -34.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds