Wall clock time and date at job start Sat Apr 11 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46788 * 2 1 4 4 N 1.46503 * 109.47686 * 239.99775 * 2 1 3 5 5 C 1.34775 * 119.99450 * 84.99609 * 4 2 1 6 6 O 1.21280 * 120.00906 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99456 * 180.02562 * 5 4 2 8 8 H 1.09002 * 109.52402 * 299.86874 * 7 5 4 9 9 C 1.53315 * 109.50819 * 179.71609 * 7 5 4 10 10 C 1.53174 * 108.96863 * 183.14194 * 9 7 5 11 11 C 1.53089 * 109.21786 * 56.94931 * 10 9 7 12 12 O 1.42904 * 109.41454 * 302.36429 * 11 10 9 13 13 C 1.42896 * 114.09952 * 61.15380 * 12 11 10 14 14 C 1.53000 * 109.47474 * 119.99540 * 2 1 3 15 15 C 1.53934 * 113.73346 * 281.87807 * 14 2 1 16 16 N 1.48185 * 86.10100 * 221.95326 * 15 14 2 17 17 C 1.46900 * 111.07119 * 137.52255 * 16 15 14 18 18 C 1.50697 * 109.47355 * 90.56799 * 17 16 15 19 19 O 1.21293 * 120.00141 * 359.97438 * 18 17 16 20 20 N 1.34781 * 119.99854 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99491 * 179.97438 * 20 18 17 22 22 H 1.07991 * 120.00475 * 0.02562 * 21 20 18 23 23 C 1.38945 * 119.99542 * 180.02562 * 21 20 18 24 24 N 1.31421 * 120.00405 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00213 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46812 * 89.99350 * 25 23 21 27 27 H 1.48493 * 109.47494 * 209.99707 * 25 23 21 28 28 H 1.48501 * 109.46904 * 330.00096 * 25 23 21 29 29 C 1.47954 * 90.79830 * 24.59992 * 16 15 14 30 30 H 1.09007 * 109.46765 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47574 * 300.08275 * 1 2 3 32 32 H 1.09002 * 109.47233 * 60.09068 * 1 2 3 33 33 H 0.96995 * 119.99654 * 265.00247 * 4 2 1 34 34 H 1.09000 * 109.62530 * 63.26278 * 9 7 5 35 35 H 1.09000 * 109.52956 * 302.95668 * 9 7 5 36 36 H 1.08999 * 109.52109 * 297.01040 * 10 9 7 37 37 H 1.08998 * 109.52147 * 176.89276 * 10 9 7 38 38 H 1.09008 * 109.47592 * 62.34530 * 11 10 9 39 39 H 1.08997 * 109.47941 * 182.37683 * 11 10 9 40 40 H 1.09004 * 109.47890 * 58.82318 * 13 12 11 41 41 H 1.08994 * 109.48149 * 178.84750 * 13 12 11 42 42 H 1.08999 * 112.93496 * 53.44060 * 14 2 1 43 43 H 1.08999 * 113.75962 * 336.23585 * 15 14 2 44 44 H 1.09005 * 113.75832 * 107.59891 * 15 14 2 45 45 H 1.09002 * 109.47182 * 210.56707 * 17 16 15 46 46 H 1.08995 * 109.46932 * 330.56068 * 17 16 15 47 47 H 0.96997 * 120.00108 * 359.97438 * 20 18 17 48 48 H 0.97002 * 119.99969 * 179.97438 * 24 23 21 49 49 H 1.09001 * 113.76051 * 221.08219 * 29 16 15 50 50 H 1.08999 * 113.75852 * 89.72137 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8590 1.1586 -2.4116 7 6 2.6490 -0.7288 -3.5876 8 1 3.6492 -1.1196 -3.4001 9 6 2.6943 0.2538 -4.7636 10 6 3.1304 -0.4985 -6.0245 11 6 2.1677 -1.6621 -6.2754 12 8 2.1506 -2.5194 -5.1322 13 6 1.7049 -1.8835 -3.9326 14 6 2.0400 -0.7211 1.2493 15 6 1.9731 0.1328 2.5283 16 7 3.3108 -0.4200 2.8460 17 6 4.2037 0.6240 3.3665 18 6 4.0861 0.6831 4.8677 19 8 3.3324 -0.0701 5.4471 20 7 4.8187 1.5729 5.5665 21 6 4.7113 1.6269 6.9322 22 1 4.0402 0.9563 7.4481 23 6 5.4660 2.5445 7.6526 24 7 6.2832 3.3603 7.0249 25 14 5.3194 2.6188 9.5134 26 1 6.3106 1.6977 10.1251 27 1 5.5809 4.0055 9.9756 28 1 3.9498 2.2119 9.9185 29 6 3.5700 -0.6726 1.4115 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5151 0.8892 32 1 -0.3634 0.5124 -0.8908 33 1 2.2491 -1.6318 -1.1525 34 1 3.4076 1.0494 -4.5486 35 1 1.7041 0.6822 -4.9188 36 1 4.1405 -0.8845 -5.8873 37 1 3.1125 0.1796 -6.8777 38 1 1.1651 -1.2726 -6.4527 39 1 2.4983 -2.2258 -7.1477 40 1 0.6964 -1.4969 -4.0793 41 1 1.7020 -2.6068 -3.1173 42 1 1.6179 -1.7193 1.3656 43 1 1.9750 1.2064 2.3401 44 1 1.1923 -0.1771 3.2229 45 1 5.2327 0.3923 3.0914 46 1 3.9223 1.5876 2.9417 47 1 5.4218 2.1749 5.1031 48 1 6.8098 4.0011 7.5278 49 1 4.0628 -1.6249 1.2153 50 1 4.0400 0.1649 0.8959 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506587755.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:05 Heat of formation + Delta-G solvation = -121.860627 kcal Electronic energy + Delta-G solvation = -29471.186716 eV Core-core repulsion = 25304.825752 eV Total energy + Delta-G solvation = -4166.360964 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.71889 -41.00892 -39.77835 -39.33501 -36.44462 -35.89874 -34.60825 -33.35297 -33.07708 -31.75088 -30.51089 -27.45694 -27.08423 -26.11471 -25.72775 -25.25381 -23.04214 -21.79599 -21.15666 -20.99322 -20.48835 -19.90025 -18.35854 -17.85247 -17.48879 -17.26020 -16.90737 -16.74797 -16.51354 -16.28215 -16.08518 -15.78617 -15.58952 -15.21842 -15.11207 -14.72223 -14.59813 -14.31009 -14.07666 -13.89749 -13.70556 -13.55930 -13.50861 -13.34058 -12.99825 -12.89142 -12.58318 -12.45779 -12.43356 -12.14565 -12.14036 -11.96952 -11.89487 -11.80905 -11.61225 -11.50467 -11.36790 -10.88280 -10.48327 -10.38828 -10.14644 -10.02260 -9.62801 -8.47597 -5.96695 1.37044 1.40312 1.53431 1.58022 2.04300 2.07773 2.27701 2.76298 2.89187 3.18301 3.33665 3.42194 3.57261 3.64266 3.77484 3.82363 3.97871 4.09311 4.15946 4.16556 4.20000 4.27082 4.34576 4.39474 4.44465 4.47539 4.50066 4.52476 4.63205 4.71648 4.76001 4.78846 4.81316 4.82819 4.91645 4.99055 5.05703 5.12598 5.19242 5.30408 5.33077 5.38942 5.42218 5.51014 5.88960 6.07559 6.16751 6.54778 6.59459 7.11851 7.23818 7.55220 8.11521 8.69882 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026852 B = 0.001777 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.515456 B =15754.941549 C =16114.935722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 H 0.066 0.934 4 N -0.708 5.708 5 C 0.521 3.479 6 O -0.580 6.580 7 C -0.137 4.137 8 H 0.121 0.879 9 C -0.104 4.104 10 C -0.151 4.151 11 C 0.051 3.949 12 O -0.391 6.391 13 C 0.074 3.926 14 C -0.098 4.098 15 C 0.014 3.986 16 N -0.482 5.482 17 C 0.023 3.977 18 C 0.442 3.558 19 O -0.617 6.617 20 N -0.577 5.577 21 C -0.334 4.334 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.273 1.273 29 C 0.012 3.988 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.416 0.584 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.111 0.889 40 H 0.053 0.947 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.105 0.895 46 H 0.074 0.926 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.106 0.894 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.265 -9.523 -28.497 30.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.052 3.948 3 H 0.084 0.916 4 N -0.360 5.360 5 C 0.308 3.692 6 O -0.459 6.459 7 C -0.158 4.158 8 H 0.139 0.861 9 C -0.142 4.142 10 C -0.188 4.188 11 C -0.025 4.025 12 O -0.309 6.309 13 C -0.003 4.003 14 C -0.117 4.117 15 C -0.116 4.116 16 N -0.204 5.204 17 C -0.108 4.108 18 C 0.229 3.771 19 O -0.503 6.503 20 N -0.215 5.215 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.818 3.182 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.116 4.116 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.253 0.747 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.129 0.871 40 H 0.071 0.929 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.123 0.877 46 H 0.092 0.908 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.125 0.875 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.705 -9.756 -27.589 30.261 hybrid contribution 0.468 1.495 0.586 1.672 sum -7.237 -8.262 -27.003 29.151 Atomic orbital electron populations 1.22089 0.94268 1.03184 1.01998 1.20844 0.94694 0.96079 0.83173 0.91558 1.45956 1.66564 1.14755 1.08692 1.20809 0.76586 0.86742 0.85062 1.90709 1.51568 1.17996 1.85651 1.22042 1.03172 0.97857 0.92765 0.86138 1.21417 1.02235 0.97064 0.93500 1.22196 1.00574 0.98064 0.97980 1.22810 0.98958 0.92088 0.88619 1.87957 1.87627 1.37625 1.17714 1.22560 0.95255 0.94005 0.88465 1.23133 0.95590 1.00880 0.92078 1.23990 0.93217 0.98061 0.96310 1.68375 1.02456 1.33150 1.16443 1.22341 1.00427 0.96268 0.91798 1.20794 0.83270 0.82614 0.90381 1.90478 1.42468 1.44899 1.72436 1.41973 1.39103 1.33428 1.06962 1.19663 1.24452 1.19123 0.83077 0.90382 1.26063 0.95286 0.95042 1.05011 1.69680 1.26495 1.21798 1.38294 0.84912 0.78645 0.77940 0.76734 1.19566 1.19482 1.19787 1.24053 0.96621 1.03189 0.87741 0.90538 0.91443 0.93434 0.74651 0.91830 0.92256 0.90533 0.89231 0.92711 0.87097 0.92885 0.86375 0.86003 0.91268 0.90443 0.87671 0.90784 0.77130 0.91316 0.87540 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.44 71.98 0.68 -1.87 16 2 C 0.16 2.69 2.29 44.99 0.10 2.79 16 3 H 0.07 1.49 7.48 -2.39 -0.02 1.47 16 4 N -0.71 -9.25 4.85 -442.53 -2.15 -11.40 16 5 C 0.52 9.05 7.12 87.66 0.62 9.67 16 6 O -0.58 -15.46 15.63 -3.03 -0.05 -15.51 16 7 C -0.14 -1.67 2.73 -11.40 -0.03 -1.70 16 8 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 9 C -0.10 -1.43 4.63 30.76 0.14 -1.29 16 10 C -0.15 -1.40 6.13 30.68 0.19 -1.21 16 11 C 0.05 0.48 6.84 72.01 0.49 0.97 16 12 O -0.39 -5.00 10.77 -148.98 -1.60 -6.61 16 13 C 0.07 0.76 6.00 72.01 0.43 1.19 16 14 C -0.10 -1.77 3.35 -10.15 -0.03 -1.81 16 15 C 0.01 0.37 7.42 86.37 0.64 1.01 16 16 N -0.48 -15.17 5.65 -911.79 -5.15 -20.32 16 17 C 0.02 0.83 5.28 85.56 0.45 1.28 16 18 C 0.44 21.78 7.83 87.66 0.69 22.47 16 19 O -0.62 -35.37 16.01 -3.07 -0.05 -35.42 16 20 N -0.58 -30.49 5.29 -306.99 -1.62 -32.12 16 21 C -0.33 -19.39 9.68 84.04 0.81 -18.58 16 22 H 0.08 4.83 7.16 -2.92 -0.02 4.81 16 23 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 24 N -0.92 -50.60 13.05 21.66 0.28 -50.32 16 25 Si 0.99 43.62 29.55 68.60 2.03 45.65 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 28 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 29 C 0.01 0.25 7.39 86.41 0.64 0.89 16 30 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.07 1.14 8.08 -2.39 -0.02 1.12 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.42 2.96 8.07 -92.71 -0.75 2.21 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 0.97 8.03 -2.39 -0.02 0.95 16 36 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 39 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.12 0.70 7.64 -2.39 -0.02 0.69 16 42 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.07 1.86 7.38 -2.39 -0.02 1.85 16 44 H 0.08 2.34 8.14 -2.38 -0.02 2.33 16 45 H 0.11 3.32 8.08 -2.39 -0.02 3.30 16 46 H 0.07 2.37 7.39 -2.39 -0.02 2.35 16 47 H 0.40 19.84 7.90 -92.71 -0.73 19.11 16 48 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 49 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.07 1.47 7.88 -2.39 -0.02 1.45 16 Total: -1.00 -76.82 404.85 -2.55 -79.37 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: -0.53 Total: 33.18 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 6.30 Total: 13.49 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -8.64 Total: -114.15 kcal Atomic # 8 Polarization: -55.83 SS G_CDS: -1.70 Total: -57.53 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -76.82 -2.55 -79.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506587755.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.495 kcal (2) G-P(sol) polarization free energy of solvation -76.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds