Wall clock time and date at job start Sat Apr 11 2020 05:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46848 * 2 1 4 4 N 1.46496 * 109.47716 * 120.00476 * 2 1 3 5 5 C 1.34780 * 119.99813 * 275.00168 * 4 2 1 6 6 O 1.21280 * 119.99774 * 359.97438 * 5 4 2 7 7 C 1.50694 * 120.00188 * 179.97438 * 5 4 2 8 8 H 1.09005 * 109.57282 * 299.84127 * 7 5 4 9 9 C 1.53311 * 109.51122 * 179.71148 * 7 5 4 10 10 C 1.53177 * 108.96735 * 183.14028 * 9 7 5 11 11 C 1.53098 * 109.21356 * 56.95427 * 10 9 7 12 12 O 1.42899 * 109.41440 * 302.35638 * 11 10 9 13 13 C 1.42904 * 114.09711 * 61.16120 * 12 11 10 14 14 C 1.53001 * 109.46774 * 240.00632 * 2 1 3 15 15 C 1.53934 * 113.73692 * 156.72581 * 14 2 1 16 16 N 1.47955 * 86.18096 * 221.91863 * 15 14 2 17 17 C 1.46900 * 110.99871 * 137.58133 * 16 15 14 18 18 C 1.50701 * 109.47139 * 70.63885 * 17 16 15 19 19 O 1.21300 * 120.00007 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00370 * 179.97438 * 18 17 16 21 21 C 1.37090 * 120.00576 * 179.97438 * 20 18 17 22 22 H 1.08005 * 120.00149 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00386 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99960 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00095 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47270 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47174 * 120.00036 * 25 23 21 28 28 H 1.48503 * 109.46925 * 239.99794 * 25 23 21 29 29 C 1.47956 * 90.76387 * 24.69104 * 16 15 14 30 30 H 1.09004 * 109.46753 * 299.99480 * 1 2 3 31 31 H 1.09004 * 109.47300 * 59.99446 * 1 2 3 32 32 H 1.08992 * 109.46819 * 180.02562 * 1 2 3 33 33 H 0.96989 * 120.00150 * 94.99305 * 4 2 1 34 34 H 1.09001 * 109.62384 * 63.26615 * 9 7 5 35 35 H 1.09002 * 109.52711 * 302.95960 * 9 7 5 36 36 H 1.09002 * 109.52487 * 297.01638 * 10 9 7 37 37 H 1.09004 * 109.52023 * 176.89257 * 10 9 7 38 38 H 1.08999 * 109.47859 * 62.34349 * 11 10 9 39 39 H 1.09000 * 109.47836 * 182.37389 * 11 10 9 40 40 H 1.09002 * 109.48461 * 58.81736 * 13 12 11 41 41 H 1.08999 * 109.48109 * 178.84665 * 13 12 11 42 42 H 1.09004 * 112.93451 * 288.43195 * 14 2 1 43 43 H 1.09006 * 113.75665 * 336.23755 * 15 14 2 44 44 H 1.09004 * 113.76210 * 107.59429 * 15 14 2 45 45 H 1.08994 * 109.47318 * 190.63511 * 17 16 15 46 46 H 1.08994 * 109.47483 * 310.64191 * 17 16 15 47 47 H 0.97006 * 119.99541 * 0.02562 * 20 18 17 48 48 H 0.96999 * 120.00329 * 179.97438 * 24 23 21 49 49 H 1.09009 * 113.75336 * 220.99504 * 29 16 15 50 50 H 1.08994 * 113.86308 * 89.64526 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6907 1.1960 5 6 2.1472 -0.0184 2.3571 6 8 1.8591 1.1585 2.4115 7 6 2.6491 -0.7289 3.5876 8 1 1.9758 -1.5495 3.8356 9 6 2.7080 0.2572 4.7600 10 6 3.2931 -0.4569 5.9823 11 6 4.6716 -1.0193 5.6252 12 8 4.5494 -1.9036 4.5094 13 6 4.0525 -1.2808 3.3231 14 6 2.0399 -0.7211 -1.2494 15 6 3.4669 -0.3153 -1.6600 16 7 2.9603 -0.3145 -3.0501 17 6 3.4680 0.8456 -3.7948 18 6 4.9417 0.6693 -4.0555 19 8 5.5131 -0.3247 -3.6596 20 7 5.6250 1.6161 -4.7287 21 6 6.9658 1.4561 -4.9655 22 1 7.4746 0.5710 -4.6129 23 6 7.6703 2.4325 -5.6591 24 7 7.0515 3.5096 -6.0876 25 14 9.4971 2.2140 -5.9823 26 1 9.9522 0.9257 -5.4003 27 1 9.7438 2.2108 -7.4467 28 1 10.2478 3.3320 -5.3563 29 6 1.5821 -0.0737 -2.5687 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 2.2491 -1.6317 1.1524 34 1 1.7035 0.6117 4.9910 35 1 3.3421 1.1028 4.4934 36 1 2.6328 -1.2720 6.2787 37 1 3.3904 0.2507 6.8056 38 1 5.3429 -0.1999 5.3680 39 1 5.0739 -1.5647 6.4789 40 1 4.7156 -0.4648 3.0357 41 1 4.0090 -2.0145 2.5182 42 1 1.8822 -1.7990 -1.2117 43 1 3.7640 0.6699 -1.3003 44 1 4.2152 -1.0837 -1.4657 45 1 2.9385 0.9282 -4.7439 46 1 3.3084 1.7512 -3.2096 47 1 5.1682 2.4112 -5.0451 48 1 7.5434 4.1914 -6.5715 49 1 0.8243 -0.6492 -3.1006 50 1 1.3260 0.9816 -2.4745 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506587762.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:11 Heat of formation + Delta-G solvation = -122.625162 kcal Electronic energy + Delta-G solvation = -29854.235084 eV Core-core repulsion = 25687.840967 eV Total energy + Delta-G solvation = -4166.394117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.74732 -41.07839 -39.79138 -39.34531 -36.46278 -35.91284 -34.63876 -33.37771 -33.10759 -31.79000 -30.44636 -27.62798 -26.91846 -26.11094 -25.77221 -25.25544 -23.13748 -21.79220 -21.23255 -20.98292 -20.41755 -19.91152 -18.39224 -17.84597 -17.63441 -17.30279 -16.95732 -16.64397 -16.55176 -16.27584 -16.08674 -15.77609 -15.59671 -15.30666 -15.09918 -14.87697 -14.62127 -14.15596 -14.04249 -13.94389 -13.63851 -13.54867 -13.52497 -13.31514 -13.08995 -12.86535 -12.71511 -12.60451 -12.44004 -12.17314 -12.14362 -11.94011 -11.80858 -11.79130 -11.65607 -11.51722 -11.40470 -10.90195 -10.52358 -10.35804 -10.17783 -10.04389 -9.65821 -8.49486 -5.98391 1.34257 1.39375 1.53800 1.54217 2.01628 2.08933 2.26685 2.81162 2.84650 3.16858 3.24267 3.43937 3.54867 3.63740 3.74383 3.76438 3.95287 4.08903 4.14100 4.17236 4.22991 4.27357 4.34442 4.41366 4.43947 4.47386 4.51060 4.53015 4.58884 4.69069 4.77595 4.78644 4.80953 4.87706 4.89283 4.99703 5.02844 5.08137 5.19945 5.28696 5.31787 5.37670 5.41626 5.53068 5.88310 6.06263 6.12009 6.50791 6.56905 7.09736 7.20160 7.52572 8.08111 8.68319 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011409 B = 0.002384 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.686031 B =11741.329804 C =13373.906951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.153 3.847 3 H 0.062 0.938 4 N -0.712 5.712 5 C 0.519 3.481 6 O -0.579 6.579 7 C -0.134 4.134 8 H 0.127 0.873 9 C -0.104 4.104 10 C -0.148 4.148 11 C 0.048 3.952 12 O -0.389 6.389 13 C 0.071 3.929 14 C -0.100 4.100 15 C 0.020 3.980 16 N -0.479 5.479 17 C 0.022 3.978 18 C 0.440 3.560 19 O -0.617 6.617 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.269 1.269 28 H -0.271 1.271 29 C 0.016 3.984 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.415 0.585 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.114 0.886 40 H 0.043 0.957 41 H 0.114 0.886 42 H 0.124 0.876 43 H 0.049 0.951 44 H 0.069 0.931 45 H 0.110 0.890 46 H 0.071 0.929 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.114 0.886 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.040 -8.183 20.474 26.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.048 3.952 3 H 0.080 0.920 4 N -0.363 5.363 5 C 0.306 3.694 6 O -0.459 6.459 7 C -0.156 4.156 8 H 0.145 0.855 9 C -0.142 4.142 10 C -0.185 4.185 11 C -0.028 4.028 12 O -0.308 6.308 13 C -0.006 4.006 14 C -0.119 4.119 15 C -0.109 4.109 16 N -0.202 5.202 17 C -0.110 4.110 18 C 0.227 3.773 19 O -0.503 6.503 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.196 1.196 29 C -0.112 4.112 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.252 0.748 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.132 0.868 40 H 0.061 0.939 41 H 0.132 0.868 42 H 0.142 0.858 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.128 0.872 46 H 0.089 0.911 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.133 0.867 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.595 -8.579 20.205 26.360 hybrid contribution 0.860 1.457 -0.268 1.713 sum -13.736 -7.122 19.937 25.236 Atomic orbital electron populations 1.22070 0.93298 1.03352 1.02404 1.20940 0.95252 0.95874 0.83094 0.92023 1.46048 1.66581 1.14764 1.08952 1.20819 0.76690 0.86731 0.85140 1.90695 1.51856 1.17783 1.85570 1.22025 0.99904 1.00439 0.93196 0.85472 1.21429 1.02217 0.96896 0.93671 1.22187 0.97307 1.01257 0.97781 1.22847 0.96535 0.94107 0.89306 1.87953 1.85311 1.37115 1.20415 1.22543 0.91322 0.98343 0.88389 1.23204 0.93667 1.02140 0.92876 1.23753 0.97772 1.00279 0.89147 1.68408 1.04643 1.35138 1.11998 1.22353 0.92208 0.94446 1.01947 1.20765 0.89999 0.84095 0.82424 1.90483 1.71687 1.31691 1.56480 1.41969 1.09127 1.20228 1.49971 1.19680 0.85408 1.06154 1.34915 0.90402 1.26063 1.04700 0.94577 0.96047 1.69677 1.38707 1.09452 1.38380 0.84868 0.76813 0.78294 0.78345 1.19764 1.19445 1.19586 1.24094 0.92016 1.01268 0.93832 0.93710 0.90264 0.90453 0.74831 0.91085 0.92839 0.89956 0.89046 0.93329 0.86839 0.93857 0.86764 0.85799 0.93254 0.91217 0.87202 0.91131 0.77079 0.91273 0.86741 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.29 71.98 0.67 -1.62 16 2 C 0.15 2.84 2.41 44.99 0.11 2.95 16 3 H 0.06 1.53 7.37 -2.38 -0.02 1.51 16 4 N -0.71 -11.74 4.98 -442.54 -2.20 -13.95 16 5 C 0.52 10.76 7.12 87.65 0.62 11.38 16 6 O -0.58 -17.07 15.63 -3.03 -0.05 -17.12 16 7 C -0.13 -2.07 2.73 -11.40 -0.03 -2.11 16 8 H 0.13 1.44 8.14 -2.38 -0.02 1.42 16 9 C -0.10 -1.70 4.63 30.76 0.14 -1.56 16 10 C -0.15 -1.71 6.13 30.69 0.19 -1.52 16 11 C 0.05 0.64 6.84 72.01 0.49 1.14 16 12 O -0.39 -6.86 10.77 -148.98 -1.60 -8.46 16 13 C 0.07 1.16 6.00 72.02 0.43 1.59 16 14 C -0.10 -1.91 3.49 -10.15 -0.04 -1.95 16 15 C 0.02 0.59 6.31 86.41 0.55 1.13 16 16 N -0.48 -15.07 5.95 -912.44 -5.43 -20.50 16 17 C 0.02 0.78 5.31 85.56 0.45 1.23 16 18 C 0.44 21.49 7.59 87.66 0.67 22.16 16 19 O -0.62 -34.77 15.13 -3.09 -0.05 -34.81 16 20 N -0.58 -30.32 5.29 -306.97 -1.62 -31.94 16 21 C -0.33 -19.23 9.68 84.04 0.81 -18.42 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 24 N -0.92 -50.52 13.05 21.66 0.28 -50.23 16 25 Si 0.99 43.59 29.55 68.60 2.03 45.62 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 29 C 0.02 0.34 6.59 86.41 0.57 0.90 16 30 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 1.03 7.43 -2.39 -0.02 1.01 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 33 H 0.41 4.57 8.07 -92.72 -0.75 3.82 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 1.08 8.03 -2.39 -0.02 1.06 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.04 0.83 8.14 -2.39 -0.02 0.82 16 41 H 0.11 1.47 7.64 -2.39 -0.02 1.45 16 42 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 43 H 0.05 1.62 7.60 -2.38 -0.02 1.60 16 44 H 0.07 2.39 8.09 -2.38 -0.02 2.37 16 45 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 46 H 0.07 2.25 7.69 -2.39 -0.02 2.23 16 47 H 0.40 19.82 7.90 -92.70 -0.73 19.08 16 48 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 49 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 50 H 0.08 1.51 7.72 -2.39 -0.02 1.50 16 Total: -1.00 -76.45 402.01 -3.07 -79.52 By element: Atomic # 1 Polarization: 37.41 SS G_CDS: -0.53 Total: 36.87 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 6.11 Total: 15.01 kcal Atomic # 7 Polarization: -107.65 SS G_CDS: -8.97 Total: -116.62 kcal Atomic # 8 Polarization: -58.70 SS G_CDS: -1.70 Total: -60.40 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -76.45 -3.07 -79.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506587762.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.106 kcal (2) G-P(sol) polarization free energy of solvation -76.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds