Wall clock time and date at job start Sat Apr 11 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00411 * 2 1 4 4 C 1.53781 * 113.61392 * 149.99993 * 3 2 1 5 5 C 1.53787 * 87.07830 * 89.20290 * 4 3 2 6 6 C 1.50702 * 113.61147 * 139.98103 * 5 4 3 7 7 O 1.21282 * 120.00310 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99541 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99738 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.47228 * 35.00196 * 9 8 6 11 11 C 1.52998 * 109.47265 * 274.99751 * 9 8 6 12 12 C 1.53001 * 109.46970 * 155.00055 * 9 8 6 13 13 C 1.53509 * 114.17037 * 294.87231 * 12 9 8 14 14 N 1.47478 * 87.93339 * 220.33279 * 13 12 9 15 15 C 1.46900 * 111.00248 * 138.70522 * 14 13 12 16 16 C 1.50698 * 109.47352 * 169.99664 * 15 14 13 17 17 O 1.21288 * 119.99892 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00199 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99892 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00206 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99969 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99624 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00146 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47214 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47323 * 119.99837 * 23 21 19 26 26 H 1.48499 * 109.46982 * 239.99537 * 23 21 19 27 27 C 1.47475 * 87.83649 * 27.01148 * 14 13 12 28 28 C 1.53777 * 113.69412 * 247.53904 * 3 2 1 29 29 H 1.09003 * 109.47034 * 59.99334 * 1 2 3 30 30 H 1.08995 * 109.47706 * 180.02562 * 1 2 3 31 31 H 1.09011 * 109.46680 * 299.99886 * 1 2 3 32 32 H 1.09006 * 112.84713 * 18.80886 * 3 2 1 33 33 H 1.08993 * 113.61453 * 334.65455 * 4 3 2 34 34 H 1.09004 * 113.61264 * 203.74721 * 4 3 2 35 35 H 1.08993 * 113.61661 * 270.79798 * 5 4 3 36 36 H 0.96999 * 120.00456 * 359.97438 * 8 6 5 37 37 H 1.09003 * 109.46874 * 64.94257 * 11 9 8 38 38 H 1.08998 * 109.47292 * 184.93818 * 11 9 8 39 39 H 1.08993 * 109.47529 * 304.93916 * 11 9 8 40 40 H 1.08994 * 113.38677 * 67.95685 * 12 9 8 41 41 H 1.08998 * 113.47832 * 105.56319 * 13 12 9 42 42 H 1.09007 * 113.47844 * 335.09470 * 13 12 9 43 43 H 1.08999 * 109.47372 * 289.99999 * 15 14 13 44 44 H 1.09005 * 109.47142 * 49.99507 * 15 14 13 45 45 H 0.97006 * 119.99733 * 0.02562 * 18 16 15 46 46 H 0.97001 * 119.99938 * 180.02562 * 22 21 19 47 47 H 1.08995 * 113.47623 * 87.76179 * 27 14 13 48 48 H 1.09000 * 113.47560 * 218.22306 * 27 14 13 49 49 H 1.08997 * 113.61571 * 156.31878 * 28 3 2 50 50 H 1.09003 * 113.61465 * 25.41867 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3757 1.3717 0.7045 5 6 4.0063 1.0351 -0.6571 6 6 5.2713 1.8027 -0.9427 7 8 5.6955 2.5968 -0.1300 8 7 5.9307 1.6076 -2.1018 9 6 7.1602 2.3542 -2.3798 10 1 7.7144 2.4998 -1.4526 11 6 6.8052 3.7156 -2.9809 12 6 8.0212 1.5682 -3.3705 13 6 8.5440 0.2314 -2.8263 14 7 9.8273 0.5233 -3.4919 15 6 10.9612 0.1556 -2.6334 16 6 12.2392 0.2344 -3.4281 17 8 12.2085 0.5649 -4.5947 18 7 13.4164 -0.0613 -2.8423 19 6 14.5791 0.0110 -3.5651 20 1 14.5516 0.3045 -4.6041 21 6 15.7927 -0.2944 -2.9613 22 7 15.8260 -0.6520 -1.6972 23 14 17.3770 -0.1953 -3.9460 24 1 17.0703 0.2286 -5.3357 25 1 18.2900 0.7926 -3.3167 26 1 18.0301 -1.5287 -3.9683 27 6 9.5064 1.9565 -3.3585 28 6 2.7532 1.6511 -1.3013 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.3139 2.0789 0.3239 33 1 3.5176 0.5947 1.4555 34 1 3.6306 2.3666 1.0698 35 1 4.1106 -0.0348 -0.8374 36 1 5.5914 0.9728 -2.7520 37 1 6.2668 4.3096 -2.2424 38 1 7.7192 4.2352 -3.2686 39 1 6.1769 3.5721 -3.8598 40 1 7.5848 1.5042 -4.3672 41 1 8.0288 -0.6364 -3.2381 42 1 8.6154 0.2033 -1.7389 43 1 11.0155 0.8426 -1.7890 44 1 10.8240 -0.8615 -2.2660 45 1 13.4410 -0.3252 -1.9091 46 1 16.6733 -0.8648 -1.2755 47 1 9.8346 2.3889 -2.4133 48 1 9.8068 2.5509 -4.2214 49 1 2.8379 2.7222 -1.4844 50 1 2.3927 1.0994 -2.1696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506628425.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:15 Heat of formation + Delta-G solvation = -57.669277 kcal Electronic energy + Delta-G solvation = -29039.353020 eV Core-core repulsion = 24875.775601 eV Total energy + Delta-G solvation = -4163.577419 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.94235 -40.23734 -38.81630 -37.75077 -36.11418 -35.32364 -33.84992 -31.67896 -31.15221 -29.54238 -27.56698 -26.34884 -26.16551 -25.74811 -25.65336 -24.08517 -22.13197 -20.92885 -20.16836 -19.54465 -19.16150 -17.98449 -17.75154 -16.65465 -16.55285 -16.05570 -15.84447 -15.73189 -15.49267 -15.25652 -14.89207 -14.61105 -14.36182 -14.14396 -13.99223 -13.70349 -13.42536 -12.98465 -12.95079 -12.78357 -12.56306 -12.51923 -12.34205 -12.31561 -11.94870 -11.85137 -11.55680 -11.29404 -11.20105 -11.07504 -10.92345 -10.88452 -10.81728 -10.45452 -10.31797 -10.18796 -10.07863 -9.80073 -9.47717 -9.30220 -8.75544 -8.16534 -7.92439 -6.38290 -3.78924 2.40634 2.91215 3.15906 3.18621 3.28771 3.36267 3.93632 3.99319 4.02056 4.13798 4.24970 4.27780 4.31935 4.48263 4.58736 4.77166 4.86817 4.88918 4.93268 4.99659 5.06147 5.15407 5.18252 5.21110 5.26502 5.27700 5.32336 5.41714 5.46978 5.54509 5.55238 5.63229 5.67424 5.70491 5.73829 5.76665 5.79156 5.96246 6.00669 6.20810 6.30434 6.32535 6.56714 6.71086 7.20441 7.30393 7.58587 8.03308 8.09973 8.66030 9.22149 9.58640 10.11153 10.79743 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025979 B = 0.001679 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.552120 B =16672.929763 C =17039.272256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.369 6.369 3 C 0.061 3.939 4 C -0.117 4.117 5 C -0.131 4.131 6 C 0.523 3.477 7 O -0.541 6.541 8 N -0.721 5.721 9 C 0.152 3.848 10 H 0.088 0.912 11 C -0.161 4.161 12 C -0.127 4.127 13 C 0.001 3.999 14 N -0.440 5.440 15 C 0.008 3.992 16 C 0.447 3.553 17 O -0.575 6.575 18 N -0.568 5.568 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.017 3.983 28 C -0.141 4.141 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.401 0.599 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.087 0.913 45 H 0.391 0.609 46 H 0.270 0.730 47 H 0.069 0.931 48 H 0.090 0.910 49 H 0.093 0.907 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.964 3.901 4.470 31.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C 0.003 3.997 4 C -0.155 4.155 5 C -0.152 4.152 6 C 0.309 3.691 7 O -0.418 6.418 8 N -0.371 5.371 9 C 0.047 3.953 10 H 0.106 0.894 11 C -0.219 4.219 12 C -0.147 4.147 13 C -0.128 4.128 14 N -0.161 5.161 15 C -0.124 4.124 16 C 0.232 3.768 17 O -0.458 6.458 18 N -0.205 5.205 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.113 4.113 28 C -0.179 4.179 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.235 0.765 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.126 0.874 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.105 0.895 45 H 0.224 0.776 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.109 0.891 49 H 0.112 0.888 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -30.177 4.168 3.730 30.691 hybrid contribution 0.546 -0.076 0.686 0.880 sum -29.631 4.092 4.416 30.237 Atomic orbital electron populations 1.22836 0.80713 1.02964 1.00107 1.87890 1.19887 1.26403 1.94543 1.23071 0.94783 0.85369 0.96498 1.23117 0.92592 1.04067 0.95701 1.22716 0.91846 1.01160 0.99481 1.20517 0.84936 0.82519 0.81122 1.90696 1.67855 1.36498 1.46745 1.46081 1.26483 1.44508 1.20068 1.20988 0.84766 0.91026 0.98520 0.89392 1.22130 1.02339 0.96530 1.00910 1.23072 0.95482 0.96353 0.99745 1.23851 0.92795 0.97938 0.98203 1.68811 0.99802 1.07494 1.40002 1.22509 0.92952 1.01981 0.94923 1.19668 0.84203 0.84536 0.88364 1.90518 1.86495 1.51951 1.16872 1.41885 1.05204 1.60135 1.13289 1.19750 0.83210 1.42970 0.96769 0.87909 1.25255 0.99538 0.97229 0.96013 1.69624 1.27410 1.46561 1.10876 0.85802 0.81047 0.77764 0.79742 1.19235 1.20797 1.20783 1.23820 0.92422 0.92760 1.02296 1.23371 0.94492 1.01631 0.98367 0.93890 0.89435 0.93851 0.90346 0.90001 0.87521 0.86505 0.76505 0.92273 0.91209 0.92384 0.87443 0.89786 0.91506 0.92270 0.89454 0.77566 0.91985 0.91301 0.89137 0.88827 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.85 101.05 1.10 1.23 16 2 O -0.37 -2.72 10.64 -35.23 -0.37 -3.10 16 3 C 0.06 0.39 4.37 -25.92 -0.11 0.27 16 4 C -0.12 -0.89 7.24 -25.92 -0.19 -1.08 16 5 C -0.13 -0.97 4.09 -90.95 -0.37 -1.34 16 6 C 0.52 5.16 7.32 -10.99 -0.08 5.08 16 7 O -0.54 -7.45 15.56 5.56 0.09 -7.36 16 8 N -0.72 -5.98 4.96 -53.81 -0.27 -6.25 16 9 C 0.15 1.48 2.34 -67.93 -0.16 1.32 16 10 H 0.09 1.05 7.44 -51.93 -0.39 0.67 16 11 C -0.16 -1.47 9.47 37.16 0.35 -1.11 16 12 C -0.13 -1.34 3.49 -90.09 -0.31 -1.66 16 13 C 0.00 0.02 7.14 -7.55 -0.05 -0.04 16 14 N -0.44 -7.33 5.82 -246.11 -1.43 -8.76 16 15 C 0.01 0.15 5.30 -4.98 -0.03 0.13 16 16 C 0.45 10.93 7.85 -10.99 -0.09 10.84 16 17 O -0.58 -16.19 16.01 5.55 0.09 -16.11 16 18 N -0.57 -14.78 5.29 -10.96 -0.06 -14.84 16 19 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 20 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -25.00 13.05 55.50 0.72 -24.27 16 23 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.02 0.24 7.26 -7.55 -0.05 0.18 16 28 C -0.14 -0.83 7.46 -25.92 -0.19 -1.03 16 29 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.04 0.16 8.14 -51.92 -0.42 -0.26 16 32 H 0.08 0.39 7.87 -51.93 -0.41 -0.02 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.11 0.89 7.43 -51.93 -0.39 0.51 16 35 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.40 2.43 8.60 -40.82 -0.35 2.08 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.07 0.79 7.87 -51.93 -0.41 0.38 16 43 H 0.06 0.98 7.30 -51.93 -0.38 0.60 16 44 H 0.09 1.46 8.08 -51.93 -0.42 1.04 16 45 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 46 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 47 H 0.07 0.94 7.28 -51.93 -0.38 0.56 16 48 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 49 H 0.09 0.55 8.09 -51.93 -0.42 0.13 16 50 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 412.56 15.07 6.22 6.22 Total: -1.00 -35.00 412.56 -8.92 -43.91 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -8.44 Total: 9.52 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -0.43 Total: 4.67 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -1.03 Total: -54.12 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.20 Total: -26.57 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.00 -8.92 -43.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506628425.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.758 kcal (2) G-P(sol) polarization free energy of solvation -34.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds