Wall clock time and date at job start Sat Apr 11 2020 05:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00030 * 2 1 4 4 C 1.53786 * 113.61522 * 210.00150 * 3 2 1 5 5 C 1.53775 * 87.08261 * 220.02006 * 4 3 2 6 6 C 1.50695 * 113.61587 * 139.97977 * 5 4 3 7 7 O 1.21283 * 120.00122 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00319 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00349 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47477 * 325.00254 * 9 8 6 11 11 C 1.52997 * 109.47036 * 85.00472 * 9 8 6 12 12 C 1.53005 * 109.47557 * 205.00270 * 9 8 6 13 13 C 1.53928 * 113.73736 * 161.87075 * 12 9 8 14 14 N 1.48188 * 86.10105 * 221.96081 * 13 12 9 15 15 C 1.46899 * 111.07382 * 137.52090 * 14 13 12 16 16 C 1.50703 * 109.47282 * 90.56246 * 15 14 13 17 17 O 1.21297 * 119.99707 * 359.97438 * 16 15 14 18 18 N 1.34766 * 120.00217 * 180.02562 * 16 15 14 19 19 C 1.37099 * 120.00094 * 179.97438 * 18 16 15 20 20 H 1.07991 * 120.00186 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99874 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00392 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99998 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46668 * 60.00303 * 23 21 19 25 25 H 1.48497 * 109.47302 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47181 * 300.00574 * 23 21 19 27 27 C 1.47955 * 90.80050 * 24.59651 * 14 13 12 28 28 C 1.53784 * 113.61299 * 112.50704 * 3 2 1 29 29 H 1.09000 * 109.47436 * 59.99325 * 1 2 3 30 30 H 1.08998 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46590 * 300.00110 * 1 2 3 32 32 H 1.08994 * 112.90756 * 341.24853 * 3 2 1 33 33 H 1.09003 * 113.61195 * 334.56943 * 4 3 2 34 34 H 1.08999 * 113.61161 * 105.46463 * 4 3 2 35 35 H 1.09004 * 113.61453 * 270.88463 * 5 4 3 36 36 H 0.96998 * 119.99835 * 0.02562 * 8 6 5 37 37 H 1.09007 * 109.47339 * 180.09063 * 11 9 8 38 38 H 1.09006 * 109.47252 * 300.09007 * 11 9 8 39 39 H 1.09005 * 109.47389 * 60.08743 * 11 9 8 40 40 H 1.09000 * 112.93447 * 293.44338 * 12 9 8 41 41 H 1.09007 * 113.75402 * 336.23694 * 13 12 9 42 42 H 1.08998 * 113.76258 * 107.60230 * 13 12 9 43 43 H 1.08996 * 109.47243 * 210.56403 * 15 14 13 44 44 H 1.08999 * 109.46865 * 330.56484 * 15 14 13 45 45 H 0.97007 * 120.00461 * 359.97438 * 18 16 15 46 46 H 0.97002 * 120.00516 * 179.97438 * 22 21 19 47 47 H 1.08998 * 113.76256 * 221.08612 * 27 14 13 48 48 H 1.09009 * 113.86009 * 89.73565 * 27 14 13 49 49 H 1.08998 * 113.60765 * 254.52613 * 28 3 2 50 50 H 1.08991 * 113.61544 * 25.42948 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3756 1.3719 -0.7046 5 6 3.8228 2.3181 0.4221 6 6 5.2328 2.0717 0.8933 7 8 5.8967 1.1924 0.3863 8 7 5.7565 2.8290 1.8775 9 6 7.1271 2.5891 2.3359 10 1 7.3430 1.5216 2.2931 11 6 8.1059 3.3440 1.4344 12 6 7.2767 3.0822 3.7766 13 6 8.5012 2.5012 4.5063 14 7 7.6052 2.3500 5.6769 15 6 7.8185 1.0576 6.3419 16 6 8.8694 1.2102 7.4112 17 8 9.3899 2.2894 7.6003 18 7 9.2317 0.1474 8.1565 19 6 10.1881 0.2862 9.1289 20 1 10.6509 1.2471 9.2980 21 6 10.5612 -0.8095 9.8978 22 7 9.9977 -1.9787 9.6925 23 14 11.8639 -0.6203 11.2232 24 1 11.4120 0.3815 12.2219 25 1 12.0800 -1.9269 11.8950 26 1 13.1356 -0.1652 10.6061 27 6 6.4214 2.3014 4.7907 28 6 2.7535 1.6488 1.3018 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.3143 2.0797 -0.3227 33 1 3.9088 0.4213 -0.7139 34 1 3.3383 1.8471 -1.6848 35 1 3.6223 3.3693 0.2149 36 1 5.2257 3.5325 2.2827 37 1 9.1259 3.1642 1.7745 38 1 7.9983 2.9938 0.4077 39 1 7.8911 4.4117 1.4784 40 1 7.1849 4.1646 3.8668 41 1 8.8492 1.5539 4.0944 42 1 9.3051 3.2216 4.6573 43 1 6.8851 0.7236 6.7949 44 1 8.1501 0.3222 5.6088 45 1 8.8157 -0.7157 8.0050 46 1 10.2585 -2.7437 10.2290 47 1 5.5667 2.8624 5.1684 48 1 6.1582 1.2961 4.4613 49 1 2.2141 2.3476 1.9411 50 1 3.1167 0.7740 1.8409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506628428.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:18 Heat of formation + Delta-G solvation = -61.860357 kcal Electronic energy + Delta-G solvation = -29192.158062 eV Core-core repulsion = 25028.398905 eV Total energy + Delta-G solvation = -4163.759157 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.89299 -40.06598 -38.72612 -37.72214 -36.23501 -35.31960 -33.84206 -31.65731 -31.14782 -29.48279 -27.65624 -26.27562 -26.14959 -25.78022 -25.56093 -24.03642 -22.05576 -20.91895 -20.21293 -19.50347 -19.14916 -18.05118 -17.78396 -16.66229 -16.52559 -16.11302 -15.96983 -15.55861 -15.51222 -15.18203 -14.86640 -14.56123 -14.45342 -14.15434 -13.80500 -13.70288 -13.45936 -12.99138 -12.88008 -12.77911 -12.57665 -12.46230 -12.28077 -12.22177 -11.95966 -11.59409 -11.53849 -11.33543 -11.26960 -11.16919 -11.02636 -10.88459 -10.82997 -10.56489 -10.41330 -10.17306 -9.99846 -9.83175 -9.45416 -9.30850 -8.68487 -8.13185 -7.92105 -6.37687 -3.78501 2.38778 2.83993 3.22598 3.27796 3.32292 3.44793 3.91585 3.97003 3.99198 4.10292 4.24207 4.29686 4.32130 4.39823 4.56706 4.66592 4.79594 4.93930 4.96367 5.00520 5.06006 5.15731 5.21665 5.22734 5.27659 5.28308 5.35672 5.43382 5.47522 5.53241 5.54596 5.61234 5.69049 5.71022 5.75548 5.79451 5.83566 5.96078 6.01963 6.22485 6.31068 6.32763 6.60872 6.81089 7.19931 7.28422 7.58477 8.01945 8.09965 8.66482 9.22312 9.59090 10.11682 10.80160 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016142 B = 0.001898 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.165429 B =14746.183212 C =15858.770590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.061 3.939 4 C -0.114 4.114 5 C -0.138 4.138 6 C 0.526 3.474 7 O -0.536 6.536 8 N -0.721 5.721 9 C 0.149 3.851 10 H 0.088 0.912 11 C -0.161 4.161 12 C -0.126 4.126 13 C 0.023 3.977 14 N -0.449 5.449 15 C 0.010 3.990 16 C 0.447 3.553 17 O -0.576 6.576 18 N -0.567 5.567 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.005 3.995 28 C -0.138 4.138 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.400 0.600 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.057 0.943 45 H 0.391 0.609 46 H 0.271 0.729 47 H 0.087 0.913 48 H 0.067 0.933 49 H 0.078 0.922 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.659 8.423 -21.731 29.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.292 6.292 3 C 0.003 3.997 4 C -0.152 4.152 5 C -0.160 4.160 6 C 0.312 3.688 7 O -0.413 6.413 8 N -0.372 5.372 9 C 0.044 3.956 10 H 0.106 0.894 11 C -0.219 4.219 12 C -0.145 4.145 13 C -0.106 4.106 14 N -0.171 5.171 15 C -0.122 4.122 16 C 0.232 3.768 17 O -0.459 6.459 18 N -0.205 5.205 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.124 4.124 28 C -0.176 4.176 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.133 0.867 36 H 0.234 0.766 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.122 0.878 41 H 0.088 0.912 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.075 0.925 45 H 0.224 0.776 46 H 0.081 0.919 47 H 0.105 0.895 48 H 0.085 0.915 49 H 0.097 0.903 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.633 8.606 -21.299 28.959 hybrid contribution -0.120 -0.640 0.340 0.734 sum -17.752 7.966 -20.959 28.599 Atomic orbital electron populations 1.22811 0.81141 1.02941 0.99891 1.87998 1.19664 1.27070 1.94494 1.23698 0.94055 0.85547 0.96438 1.23126 0.94439 1.00726 0.96859 1.22501 0.92299 1.01420 0.99743 1.20288 0.88044 0.81174 0.79302 1.90716 1.61908 1.32375 1.56279 1.46052 1.15488 1.37232 1.38397 1.21060 0.81127 1.00951 0.92429 0.89400 1.22133 0.99507 1.00279 1.00006 1.23339 0.98016 1.01368 0.91795 1.23952 0.96047 1.00865 0.89785 1.68405 1.02310 1.29358 1.17009 1.22476 1.00208 0.91599 0.97923 1.19689 0.86411 0.85425 0.85302 1.90516 1.57575 1.26665 1.71183 1.41875 1.36609 1.10083 1.31889 1.19643 1.15156 0.97410 1.10583 0.88028 1.25254 0.98901 0.94771 0.99095 1.69603 1.43205 1.00314 1.41360 0.85921 0.80642 0.77254 0.80409 1.19924 1.21002 1.19946 1.23958 0.95877 0.99626 0.92909 1.23441 0.95796 1.01147 0.97223 0.94016 0.89595 0.93951 0.89174 0.87583 0.90465 0.86730 0.76586 0.91211 0.92241 0.92390 0.87775 0.91234 0.88774 0.89516 0.92456 0.77559 0.91870 0.89498 0.91462 0.90294 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.85 101.05 1.10 1.26 16 2 O -0.37 -3.30 10.71 -35.23 -0.38 -3.68 16 3 C 0.06 0.41 4.31 -25.91 -0.11 0.29 16 4 C -0.11 -0.88 7.24 -25.92 -0.19 -1.06 16 5 C -0.14 -0.92 4.15 -90.96 -0.38 -1.30 16 6 C 0.53 5.16 7.32 -10.99 -0.08 5.08 16 7 O -0.54 -7.60 15.56 5.56 0.09 -7.51 16 8 N -0.72 -5.81 4.94 -53.81 -0.27 -6.08 16 9 C 0.15 1.46 2.29 -67.93 -0.16 1.30 16 10 H 0.09 1.07 7.48 -51.93 -0.39 0.68 16 11 C -0.16 -1.49 9.44 37.16 0.35 -1.14 16 12 C -0.13 -1.31 3.35 -89.69 -0.30 -1.61 16 13 C 0.02 0.32 7.43 -2.64 -0.02 0.30 16 14 N -0.45 -7.41 5.65 -239.55 -1.35 -8.76 16 15 C 0.01 0.18 5.28 -4.98 -0.03 0.16 16 16 C 0.45 10.89 7.83 -10.99 -0.09 10.80 16 17 O -0.58 -16.13 16.01 5.54 0.09 -16.05 16 18 N -0.57 -14.77 5.29 -10.97 -0.06 -14.83 16 19 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 20 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -25.02 13.05 55.50 0.72 -24.30 16 23 Si 0.93 21.42 29.55 -169.99 -5.02 16.39 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 C 0.01 0.07 7.38 -2.76 -0.02 0.04 16 28 C -0.14 -0.90 7.46 -25.91 -0.19 -1.09 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.40 7.87 -51.93 -0.41 -0.01 16 33 H 0.11 1.11 7.43 -51.93 -0.39 0.73 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.40 2.21 8.60 -40.82 -0.35 1.85 16 37 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.96 7.38 -51.92 -0.38 0.58 16 42 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 43 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 44 H 0.06 0.96 7.39 -51.93 -0.38 0.57 16 45 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 46 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.07 0.78 7.88 -51.92 -0.41 0.37 16 49 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.10 0.83 8.09 -51.93 -0.42 0.41 16 LS Contribution 412.80 15.07 6.22 6.22 Total: -1.00 -35.46 412.80 -8.76 -44.22 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -8.45 Total: 9.48 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -0.35 Total: 4.88 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.95 Total: -53.96 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.20 Total: -27.23 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.46 -8.76 -44.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506628428.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.638 kcal (2) G-P(sol) polarization free energy of solvation -35.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds