Wall clock time and date at job start Sat Apr 11 2020 05:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00030 * 2 1 4 4 C 1.53786 * 113.61522 * 210.00150 * 3 2 1 5 5 C 1.53775 * 87.08261 * 220.02006 * 4 3 2 6 6 C 1.50695 * 113.61587 * 139.97977 * 5 4 3 7 7 O 1.21283 * 120.00122 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00319 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00349 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47477 * 325.00254 * 9 8 6 11 11 C 1.52997 * 109.47036 * 85.00472 * 9 8 6 12 12 C 1.53005 * 109.47557 * 205.00270 * 9 8 6 13 13 C 1.53928 * 113.73736 * 161.87075 * 12 9 8 14 14 N 1.48188 * 86.10105 * 221.96081 * 13 12 9 15 15 C 1.46899 * 111.07382 * 137.52090 * 14 13 12 16 16 C 1.50703 * 109.47282 * 90.56246 * 15 14 13 17 17 O 1.21297 * 119.99707 * 359.97438 * 16 15 14 18 18 N 1.34766 * 120.00217 * 180.02562 * 16 15 14 19 19 C 1.37099 * 120.00094 * 179.97438 * 18 16 15 20 20 H 1.07991 * 120.00186 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99874 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00392 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99998 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46668 * 60.00303 * 23 21 19 25 25 H 1.48497 * 109.47302 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47181 * 300.00574 * 23 21 19 27 27 C 1.47955 * 90.80050 * 24.59651 * 14 13 12 28 28 C 1.53784 * 113.61299 * 112.50704 * 3 2 1 29 29 H 1.09000 * 109.47436 * 59.99325 * 1 2 3 30 30 H 1.08998 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46590 * 300.00110 * 1 2 3 32 32 H 1.08994 * 112.90756 * 341.24853 * 3 2 1 33 33 H 1.09003 * 113.61195 * 334.56943 * 4 3 2 34 34 H 1.08999 * 113.61161 * 105.46463 * 4 3 2 35 35 H 1.09004 * 113.61453 * 270.88463 * 5 4 3 36 36 H 0.96998 * 119.99835 * 0.02562 * 8 6 5 37 37 H 1.09007 * 109.47339 * 180.09063 * 11 9 8 38 38 H 1.09006 * 109.47252 * 300.09007 * 11 9 8 39 39 H 1.09005 * 109.47389 * 60.08743 * 11 9 8 40 40 H 1.09000 * 112.93447 * 293.44338 * 12 9 8 41 41 H 1.09007 * 113.75402 * 336.23694 * 13 12 9 42 42 H 1.08998 * 113.76258 * 107.60230 * 13 12 9 43 43 H 1.08996 * 109.47243 * 210.56403 * 15 14 13 44 44 H 1.08999 * 109.46865 * 330.56484 * 15 14 13 45 45 H 0.97007 * 120.00461 * 359.97438 * 18 16 15 46 46 H 0.97002 * 120.00516 * 179.97438 * 22 21 19 47 47 H 1.08998 * 113.76256 * 221.08612 * 27 14 13 48 48 H 1.09009 * 113.86009 * 89.73565 * 27 14 13 49 49 H 1.08998 * 113.60765 * 254.52613 * 28 3 2 50 50 H 1.08991 * 113.61544 * 25.42948 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3756 1.3719 -0.7046 5 6 3.8228 2.3181 0.4221 6 6 5.2328 2.0717 0.8933 7 8 5.8967 1.1924 0.3863 8 7 5.7565 2.8290 1.8775 9 6 7.1271 2.5891 2.3359 10 1 7.3430 1.5216 2.2931 11 6 8.1059 3.3440 1.4344 12 6 7.2767 3.0822 3.7766 13 6 8.5012 2.5012 4.5063 14 7 7.6052 2.3500 5.6769 15 6 7.8185 1.0576 6.3419 16 6 8.8694 1.2102 7.4112 17 8 9.3899 2.2894 7.6003 18 7 9.2317 0.1474 8.1565 19 6 10.1881 0.2862 9.1289 20 1 10.6509 1.2471 9.2980 21 6 10.5612 -0.8095 9.8978 22 7 9.9977 -1.9787 9.6925 23 14 11.8639 -0.6203 11.2232 24 1 11.4120 0.3815 12.2219 25 1 12.0800 -1.9269 11.8950 26 1 13.1356 -0.1652 10.6061 27 6 6.4214 2.3014 4.7907 28 6 2.7535 1.6488 1.3018 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.3143 2.0797 -0.3227 33 1 3.9088 0.4213 -0.7139 34 1 3.3383 1.8471 -1.6848 35 1 3.6223 3.3693 0.2149 36 1 5.2257 3.5325 2.2827 37 1 9.1259 3.1642 1.7745 38 1 7.9983 2.9938 0.4077 39 1 7.8911 4.4117 1.4784 40 1 7.1849 4.1646 3.8668 41 1 8.8492 1.5539 4.0944 42 1 9.3051 3.2216 4.6573 43 1 6.8851 0.7236 6.7949 44 1 8.1501 0.3222 5.6088 45 1 8.8157 -0.7157 8.0050 46 1 10.2585 -2.7437 10.2290 47 1 5.5667 2.8624 5.1684 48 1 6.1582 1.2961 4.4613 49 1 2.2141 2.3476 1.9411 50 1 3.1167 0.7740 1.8409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506628428.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:17 Heat of formation + Delta-G solvation = -90.383275 kcal Electronic energy + Delta-G solvation = -29193.394909 eV Core-core repulsion = 25028.398905 eV Total energy + Delta-G solvation = -4164.996004 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.71060 -41.05528 -39.76730 -39.25012 -36.84717 -36.25634 -35.88529 -33.32570 -32.53493 -30.70328 -28.14329 -27.45100 -27.10780 -26.68481 -26.37709 -25.50190 -23.01987 -21.70806 -21.03627 -20.97078 -20.24122 -19.89171 -18.67643 -17.85824 -17.42041 -17.14538 -16.76137 -16.69531 -16.52019 -16.25309 -16.09139 -15.71913 -15.67302 -15.39811 -15.02524 -14.85153 -14.49145 -14.15186 -14.03660 -13.71402 -13.52208 -13.46588 -13.45720 -13.07899 -12.97803 -12.88701 -12.71109 -12.46597 -12.43859 -12.14970 -12.09755 -11.92755 -11.87031 -11.80159 -11.63237 -11.61014 -11.49989 -10.73495 -10.39305 -10.38821 -10.11192 -10.02601 -9.63116 -8.47359 -5.96637 1.38874 1.40102 1.51617 1.64487 2.04251 2.13415 2.27701 2.76114 2.96887 3.18354 3.34179 3.42617 3.46205 3.58504 3.65490 3.79790 3.91453 4.04995 4.15781 4.17100 4.20937 4.33344 4.38919 4.40215 4.47328 4.49962 4.52267 4.56914 4.61073 4.75683 4.75990 4.79171 4.82247 4.82678 4.90231 4.98720 5.00687 5.09771 5.19515 5.27554 5.32609 5.38605 5.41681 5.55450 5.88585 6.07114 6.36781 6.59303 6.62978 7.11617 7.32504 7.55035 8.11256 8.69928 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016142 B = 0.001898 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.165429 B =14746.183212 C =15858.770590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.408 6.408 3 C 0.063 3.937 4 C -0.125 4.125 5 C -0.125 4.125 6 C 0.521 3.479 7 O -0.588 6.588 8 N -0.706 5.706 9 C 0.156 3.844 10 H 0.062 0.938 11 C -0.156 4.156 12 C -0.096 4.096 13 C 0.013 3.987 14 N -0.480 5.480 15 C 0.023 3.977 16 C 0.442 3.558 17 O -0.617 6.617 18 N -0.577 5.577 19 C -0.334 4.334 20 H 0.079 0.921 21 C -0.015 4.015 22 N -0.922 5.922 23 Si 0.995 3.005 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.272 1.272 27 C 0.013 3.987 28 C -0.134 4.134 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.122 0.878 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.154 0.846 36 H 0.417 0.583 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.123 0.877 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.395 0.605 46 H 0.278 0.722 47 H 0.108 0.892 48 H 0.071 0.929 49 H 0.107 0.893 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.582 9.966 -22.082 31.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.327 6.327 3 C 0.005 3.995 4 C -0.163 4.163 5 C -0.146 4.146 6 C 0.309 3.691 7 O -0.468 6.468 8 N -0.358 5.358 9 C 0.051 3.949 10 H 0.080 0.920 11 C -0.215 4.215 12 C -0.116 4.116 13 C -0.116 4.116 14 N -0.203 5.203 15 C -0.109 4.109 16 C 0.230 3.770 17 O -0.503 6.503 18 N -0.214 5.214 19 C -0.464 4.464 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.563 5.563 23 Si 0.818 3.182 24 H -0.196 1.196 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.115 4.115 28 C -0.172 4.172 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.140 0.860 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.172 0.828 36 H 0.255 0.745 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.141 0.859 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.123 0.877 44 H 0.091 0.909 45 H 0.229 0.771 46 H 0.087 0.913 47 H 0.126 0.874 48 H 0.089 0.911 49 H 0.126 0.874 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.601 10.161 -21.649 30.921 hybrid contribution 0.462 -1.127 0.408 1.284 sum -19.139 9.034 -21.242 29.985 Atomic orbital electron populations 1.22969 0.79644 1.03540 1.01121 1.87960 1.21509 1.28608 1.94658 1.23854 0.93925 0.85606 0.96099 1.23126 0.95311 0.99517 0.98330 1.22581 0.89873 1.03239 0.98930 1.20906 0.89047 0.80278 0.78873 1.90704 1.63455 1.34582 1.58028 1.45892 1.14830 1.37240 1.37796 1.20821 0.82348 0.99525 0.92217 0.92005 1.22083 0.99199 1.01248 0.98935 1.23127 0.95023 1.02018 0.91401 1.23991 0.96885 1.00831 0.89943 1.68378 1.04916 1.28247 1.18739 1.22340 0.98648 0.93373 0.96500 1.20771 0.86563 0.84231 0.85484 1.90476 1.59201 1.28121 1.72458 1.41968 1.36625 1.10753 1.32088 1.19632 1.16973 0.97128 1.12656 0.90334 1.26076 1.00550 0.94153 1.00667 1.69670 1.43862 1.00765 1.41977 0.84969 0.77848 0.77791 0.77599 1.19612 1.19421 1.19692 1.24037 0.95132 1.00421 0.91931 1.23392 0.95756 1.00669 0.97433 0.92553 0.89506 0.92845 0.86049 0.91390 0.89083 0.82827 0.74537 0.91537 0.93536 0.90466 0.85904 0.91440 0.90367 0.87675 0.90930 0.77147 0.91293 0.87413 0.91086 0.87444 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.85 113.37 1.23 1.45 16 2 O -0.41 -6.91 10.71 -148.98 -1.60 -8.51 16 3 C 0.06 0.71 4.31 31.12 0.13 0.85 16 4 C -0.12 -1.83 7.24 31.12 0.23 -1.60 16 5 C -0.13 -1.37 4.15 -11.02 -0.05 -1.42 16 6 C 0.52 9.67 7.32 87.66 0.64 10.32 16 7 O -0.59 -17.12 15.56 -3.04 -0.05 -17.16 16 8 N -0.71 -9.84 4.94 -442.54 -2.19 -12.03 16 9 C 0.16 2.86 2.29 44.99 0.10 2.97 16 10 H 0.06 1.51 7.48 -2.39 -0.02 1.49 16 11 C -0.16 -2.72 9.44 71.98 0.68 -2.04 16 12 C -0.10 -1.82 3.35 -10.15 -0.03 -1.86 16 13 C 0.01 0.36 7.43 86.36 0.64 1.00 16 14 N -0.48 -15.41 5.65 -911.79 -5.15 -20.56 16 15 C 0.02 0.84 5.28 85.56 0.45 1.29 16 16 C 0.44 21.99 7.83 87.66 0.69 22.68 16 17 O -0.62 -35.54 16.01 -3.08 -0.05 -35.59 16 18 N -0.58 -30.74 5.29 -306.99 -1.62 -32.37 16 19 C -0.33 -19.53 9.68 84.04 0.81 -18.72 16 20 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 21 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 22 N -0.92 -50.97 13.05 21.66 0.28 -50.69 16 23 Si 0.99 43.83 29.55 68.60 2.03 45.85 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 27 C 0.01 0.28 7.38 86.41 0.64 0.92 16 28 C -0.13 -1.45 7.46 31.12 0.23 -1.22 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.12 0.61 7.87 -2.39 -0.02 0.59 16 33 H 0.07 1.53 7.43 -2.39 -0.02 1.52 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.15 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.42 3.03 8.60 -92.71 -0.80 2.24 16 37 H 0.07 1.19 8.09 -2.38 -0.02 1.18 16 38 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.07 1.89 7.38 -2.38 -0.02 1.88 16 42 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.11 3.39 8.08 -2.39 -0.02 3.37 16 44 H 0.07 2.39 7.39 -2.39 -0.02 2.38 16 45 H 0.39 20.05 7.90 -92.70 -0.73 19.32 16 46 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 47 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.07 1.51 7.88 -2.38 -0.02 1.49 16 49 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 Total: -1.00 -80.69 412.80 -2.06 -82.75 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: -0.58 Total: 34.02 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 6.86 Total: 14.27 kcal Atomic # 7 Polarization: -106.96 SS G_CDS: -8.68 Total: -115.64 kcal Atomic # 8 Polarization: -59.56 SS G_CDS: -1.69 Total: -61.26 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -80.69 -2.06 -82.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506628428.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.634 kcal (2) G-P(sol) polarization free energy of solvation -80.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds