Wall clock time and date at job start Sat Apr 11 2020 05:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.47402 * 2 1 4 4 C 1.53000 * 109.47222 * 240.00251 * 2 1 3 5 5 C 1.52998 * 109.47119 * 175.00289 * 4 2 1 6 6 N 1.46504 * 109.47150 * 179.97438 * 5 4 2 7 7 C 1.34774 * 119.99834 * 179.97438 * 6 5 4 8 8 O 1.21287 * 120.00501 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99853 * 180.02562 * 7 6 5 10 10 H 1.08997 * 110.81086 * 56.68364 * 9 7 6 11 11 C 1.55010 * 110.74925 * 293.36740 * 9 7 6 12 12 C 1.55817 * 102.78812 * 241.67994 * 11 9 7 13 13 H 1.09000 * 115.93397 * 158.43536 * 12 11 9 14 14 C 1.55824 * 105.32532 * 287.30630 * 12 11 9 15 15 C 1.55000 * 102.78475 * 72.69184 * 14 12 11 16 16 C 1.55817 * 102.79094 * 0.02562 * 15 14 12 17 17 H 1.08999 * 115.38914 * 158.84286 * 16 15 14 18 18 O 1.46531 * 101.24858 * 32.41488 * 12 11 9 19 19 N 1.46899 * 109.47123 * 120.00322 * 2 1 3 20 20 C 1.46905 * 110.99684 * 275.00058 * 19 2 1 21 21 C 1.50703 * 109.46936 * 179.97438 * 20 19 2 22 22 O 1.21292 * 120.00298 * 359.97438 * 21 20 19 23 23 N 1.34775 * 119.99882 * 180.02562 * 21 20 19 24 24 C 1.37098 * 119.99904 * 180.02562 * 23 21 20 25 25 H 1.07994 * 120.00297 * 359.97438 * 24 23 21 26 26 C 1.38958 * 120.00008 * 179.97438 * 24 23 21 27 27 N 1.31408 * 119.99630 * 179.97438 * 26 24 23 28 28 Si 1.86793 * 119.99848 * 359.97438 * 26 24 23 29 29 H 1.48501 * 109.47169 * 90.00013 * 28 26 24 30 30 H 1.48498 * 109.47413 * 209.99814 * 28 26 24 31 31 H 1.48500 * 109.47297 * 330.00140 * 28 26 24 32 32 H 1.09005 * 109.46797 * 59.99832 * 1 2 3 33 33 H 1.08999 * 109.47636 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47485 * 300.00080 * 1 2 3 35 35 H 1.08994 * 109.47233 * 55.00102 * 4 2 1 36 36 H 1.09005 * 109.46868 * 294.99985 * 4 2 1 37 37 H 1.09005 * 109.47582 * 59.99523 * 5 4 2 38 38 H 1.09005 * 109.47003 * 299.99614 * 5 4 2 39 39 H 0.96989 * 120.00004 * 359.97438 * 6 5 4 40 40 H 1.09005 * 110.74167 * 359.97438 * 11 9 7 41 41 H 1.08998 * 110.74929 * 123.34957 * 11 9 7 42 42 H 1.08999 * 110.74753 * 314.37030 * 14 12 11 43 43 H 1.08998 * 110.75210 * 191.01315 * 14 12 11 44 44 H 1.09005 * 110.74708 * 241.67279 * 15 14 12 45 45 H 1.09001 * 110.90658 * 118.40272 * 15 14 12 46 46 H 1.00905 * 111.00131 * 38.94774 * 19 2 1 47 47 H 1.08995 * 109.47326 * 299.99594 * 20 19 2 48 48 H 1.09003 * 109.47411 * 59.99797 * 20 19 2 49 49 H 0.97000 * 120.00209 * 359.97438 * 23 21 20 50 50 H 0.97009 * 119.99581 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3136 6 7 4.0532 -1.3044 -2.5095 7 6 5.3741 -1.3398 -2.7751 8 8 6.1584 -0.8000 -2.0238 9 6 5.8764 -2.0502 -4.0055 10 1 5.4097 -1.6459 -4.9038 11 6 5.6293 -3.5766 -3.8978 12 6 7.0718 -4.1638 -3.9451 13 1 7.1932 -5.1640 -3.5292 14 6 7.5376 -3.9934 -5.4223 15 6 7.7848 -2.4670 -5.5300 16 6 7.4296 -1.9583 -4.1007 17 1 7.8583 -0.9939 -3.8280 18 8 7.8340 -3.1031 -3.2809 19 7 2.0196 -0.6926 1.1994 20 6 2.0824 0.2226 2.3469 21 6 2.5872 -0.5219 3.5560 22 8 2.8668 -1.6991 3.4705 23 7 2.7271 0.1201 4.7327 24 6 3.1869 -0.5570 5.8326 25 1 3.4366 -1.6049 5.7562 26 6 3.3317 0.1050 7.0457 27 7 3.7719 -0.5442 8.1000 28 14 2.9005 1.9177 7.1777 29 1 1.4710 2.0604 7.5539 30 1 3.7512 2.5547 8.2149 31 1 3.1363 2.5792 5.8693 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.6054 -0.2617 -2.1369 36 1 1.7516 -1.7715 -1.2056 37 1 3.9995 -1.0728 -0.4259 38 1 3.8532 0.4370 -1.3573 39 1 3.4260 -1.7364 -3.1101 40 1 5.1431 -3.8233 -2.9538 41 1 5.0394 -3.9329 -4.7423 42 1 6.7548 -4.3075 -6.1126 43 1 8.4587 -4.5474 -5.6031 44 1 7.1251 -2.0206 -6.2742 45 1 8.8281 -2.2576 -5.7659 46 1 1.4494 -1.4980 1.4100 47 1 2.7587 1.0461 2.1183 48 1 1.0870 0.6163 2.5525 49 1 2.5032 1.0614 4.8013 50 1 3.8726 -0.0821 8.9470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662979459.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:07 Heat of formation + Delta-G solvation = -107.064359 kcal Electronic energy + Delta-G solvation = -29333.332288 eV Core-core repulsion = 25167.612938 eV Total energy + Delta-G solvation = -4165.719350 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -41.37859 -39.17979 -38.57411 -37.15919 -34.83806 -33.91231 -32.76261 -31.84930 -31.58025 -31.00464 -30.01305 -28.74432 -26.48327 -24.41753 -23.64717 -22.68054 -21.84044 -21.09669 -20.73186 -19.90850 -19.32876 -18.31801 -17.67620 -16.89401 -16.25136 -16.07119 -15.78974 -15.47385 -15.27636 -15.18335 -14.79645 -14.54897 -14.35577 -14.05220 -13.56595 -13.42216 -13.30174 -13.10390 -12.93886 -12.79442 -12.35980 -12.23725 -12.17693 -12.01129 -11.94412 -11.85355 -11.63056 -11.46594 -11.39478 -11.35584 -11.24230 -11.12942 -10.93458 -10.85201 -10.56566 -10.22720 -9.94000 -9.75923 -9.53547 -9.07815 -8.55979 -8.15873 -8.09206 -6.27400 -3.78556 2.57711 3.01433 3.05955 3.09006 3.17604 3.52475 3.78295 4.08436 4.09505 4.14177 4.17645 4.34255 4.47450 4.64285 4.65821 4.70909 4.79634 4.84554 4.86843 4.95749 5.03837 5.10977 5.11753 5.25332 5.26069 5.35613 5.39698 5.44390 5.49807 5.58731 5.60299 5.63251 5.68224 5.70174 5.73216 5.75710 5.88364 5.95851 6.00896 6.08228 6.25343 6.27576 6.40856 7.12176 7.41114 7.59389 7.62265 8.18524 8.18658 8.63639 8.98967 9.46379 9.86868 10.85817 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013965 B = 0.002070 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.555882 B =13521.028387 C =14697.550814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.085 3.915 3 H 0.079 0.921 4 C -0.114 4.114 5 C 0.122 3.878 6 N -0.732 5.732 7 C 0.519 3.481 8 O -0.526 6.526 9 C -0.142 4.142 10 H 0.106 0.894 11 C -0.138 4.138 12 C 0.059 3.941 13 H 0.132 0.868 14 C -0.149 4.149 15 C -0.150 4.150 16 C 0.088 3.912 17 H 0.137 0.863 18 O -0.360 6.360 19 N -0.662 5.662 20 C 0.048 3.952 21 C 0.450 3.550 22 O -0.564 6.564 23 N -0.591 5.591 24 C -0.304 4.304 25 H 0.119 0.881 26 C 0.040 3.960 27 N -0.882 5.882 28 Si 0.880 3.120 29 H -0.272 1.272 30 H -0.277 1.277 31 H -0.269 1.269 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.395 0.605 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.351 0.649 47 H 0.087 0.913 48 H 0.044 0.956 49 H 0.370 0.630 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.496 -0.391 -31.805 31.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.026 4.026 3 H 0.098 0.902 4 C -0.153 4.153 5 C -0.001 4.001 6 N -0.383 5.383 7 C 0.304 3.696 8 O -0.401 6.401 9 C -0.163 4.163 10 H 0.124 0.876 11 C -0.176 4.176 12 C 0.001 3.999 13 H 0.150 0.850 14 C -0.187 4.187 15 C -0.188 4.188 16 C 0.030 3.970 17 H 0.154 0.846 18 O -0.279 6.279 19 N -0.295 5.295 20 C -0.085 4.085 21 C 0.236 3.764 22 O -0.446 6.446 23 N -0.231 5.231 24 C -0.432 4.432 25 H 0.137 0.863 26 C -0.163 4.163 27 N -0.522 5.522 28 Si 0.706 3.294 29 H -0.197 1.197 30 H -0.202 1.202 31 H -0.195 1.195 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.229 0.771 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.171 0.829 47 H 0.105 0.895 48 H 0.062 0.938 49 H 0.203 0.797 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.841 -0.724 -31.009 31.029 hybrid contribution -1.832 1.425 0.090 2.323 sum -2.674 0.701 -30.919 31.043 Atomic orbital electron populations 1.22516 0.97133 1.02352 1.02183 1.21509 0.92420 0.98149 0.90566 0.90232 1.21739 0.94661 1.01681 0.97213 1.21387 0.93733 0.97135 0.87869 1.46042 1.07288 1.57465 1.27531 1.20286 0.82279 0.80183 0.86842 1.90757 1.55150 1.45092 1.49150 1.23112 0.98820 0.96897 0.97492 0.87572 1.23264 0.98242 0.92570 1.03560 1.24719 0.89797 0.93643 0.91754 0.85040 1.23273 1.02110 0.96460 0.96828 1.23286 1.02688 0.95778 0.97063 1.24484 0.90694 0.92539 0.89263 0.84570 1.90187 1.66996 1.17295 1.53382 1.60192 1.57719 1.09076 1.02496 1.21736 0.99879 0.95883 0.90992 1.19724 0.84701 0.88278 0.83727 1.90568 1.53753 1.16034 1.84211 1.42209 1.60260 1.11041 1.09578 1.19433 1.40240 0.97937 0.85639 0.86297 1.25044 0.97534 0.98393 0.95282 1.69626 1.45195 1.36573 1.00794 0.86665 0.79171 0.85019 0.78503 1.19719 1.20173 1.19461 0.92199 0.92227 0.92392 0.91554 0.91121 0.89299 0.92108 0.77139 0.90001 0.89663 0.90520 0.90681 0.90527 0.90397 0.82860 0.89488 0.93765 0.79730 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 9.16 37.15 0.34 -1.29 16 2 C 0.08 0.90 2.59 -67.72 -0.18 0.72 16 3 H 0.08 0.83 7.80 -51.92 -0.40 0.42 16 4 C -0.11 -1.03 5.01 -26.73 -0.13 -1.17 16 5 C 0.12 1.44 5.56 -4.04 -0.02 1.41 16 6 N -0.73 -7.22 5.56 -60.29 -0.33 -7.55 16 7 C 0.52 6.33 6.98 -10.99 -0.08 6.25 16 8 O -0.53 -9.15 15.92 5.55 0.09 -9.06 16 9 C -0.14 -1.18 2.90 -89.17 -0.26 -1.44 16 10 H 0.11 0.57 7.80 -51.93 -0.41 0.17 16 11 C -0.14 -0.99 6.16 -24.17 -0.15 -1.14 16 12 C 0.06 0.48 5.71 -23.72 -0.14 0.35 16 13 H 0.13 0.91 8.14 -51.93 -0.42 0.48 16 14 C -0.15 -0.89 6.52 -24.17 -0.16 -1.05 16 15 C -0.15 -0.97 6.52 -24.17 -0.16 -1.13 16 16 C 0.09 0.86 4.59 -23.69 -0.11 0.75 16 17 H 0.14 1.44 7.80 -51.93 -0.41 1.03 16 18 O -0.36 -4.54 11.64 -35.23 -0.41 -4.95 16 19 N -0.66 -9.84 5.33 -107.99 -0.58 -10.42 16 20 C 0.05 0.79 5.97 -4.97 -0.03 0.76 16 21 C 0.45 10.40 7.82 -10.98 -0.09 10.31 16 22 O -0.56 -15.43 15.78 5.55 0.09 -15.34 16 23 N -0.59 -14.40 5.09 -10.96 -0.06 -14.45 16 24 C -0.30 -8.79 10.16 -14.93 -0.15 -8.94 16 25 H 0.12 3.93 7.39 -52.49 -0.39 3.54 16 26 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 27 N -0.88 -26.26 13.96 55.50 0.77 -25.48 16 28 Si 0.88 19.77 27.74 -169.99 -4.71 15.06 16 29 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 30 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 31 H -0.27 -5.54 6.52 56.52 0.37 -5.17 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 34 H 0.06 0.55 7.45 -51.93 -0.39 0.17 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.42 7.75 -51.93 -0.40 1.02 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.40 2.54 8.47 -40.82 -0.35 2.20 16 40 H 0.08 0.70 7.76 -51.93 -0.40 0.30 16 41 H 0.08 0.37 7.80 -51.93 -0.41 -0.04 16 42 H 0.08 0.32 7.80 -51.93 -0.41 -0.08 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.35 7.80 -51.93 -0.41 -0.05 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.35 5.44 8.17 -39.29 -0.32 5.12 16 47 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 48 H 0.04 0.63 7.44 -51.93 -0.39 0.24 16 49 H 0.37 7.91 5.76 -40.82 -0.24 7.67 16 50 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 401.38 15.07 6.05 6.05 Total: -1.00 -37.45 401.38 -8.76 -46.21 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -8.27 Total: 14.50 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -1.40 Total: 5.44 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: -0.19 Total: -57.91 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.23 Total: -29.35 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.71 Total: 15.06 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.45 -8.76 -46.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662979459.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.856 kcal (2) G-P(sol) polarization free energy of solvation -37.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds