Wall clock time and date at job start Sat Apr 11 2020 05:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47403 * 2 1 4 4 C 1.50708 * 109.47157 * 239.99958 * 2 1 3 5 5 O 1.21282 * 120.00225 * 240.00224 * 4 2 1 6 6 N 1.34778 * 119.99649 * 59.99786 * 4 2 1 7 7 C 1.46502 * 119.99512 * 180.02562 * 6 4 2 8 8 C 1.53010 * 109.46661 * 180.02562 * 7 6 4 9 9 C 1.53935 * 113.72848 * 185.00046 * 8 7 6 10 10 N 1.47962 * 86.30001 * 221.86345 * 9 8 7 11 11 C 1.46903 * 111.00056 * 137.63674 * 10 9 8 12 12 C 1.50700 * 109.47048 * 169.99964 * 11 10 9 13 13 O 1.21287 * 120.00092 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99908 * 180.02562 * 12 11 10 15 15 C 1.37093 * 120.00045 * 180.02562 * 14 12 11 16 16 H 1.07998 * 119.99958 * 0.02562 * 15 14 12 17 17 C 1.38949 * 120.00062 * 180.02562 * 15 14 12 18 18 N 1.31407 * 120.00011 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99890 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46808 * 90.00563 * 19 17 15 21 21 H 1.48498 * 109.47104 * 210.00361 * 19 17 15 22 22 H 1.48500 * 109.47382 * 330.00644 * 19 17 15 23 23 C 1.48308 * 90.62534 * 24.68684 * 10 9 8 24 24 C 1.52996 * 109.47170 * 120.00170 * 2 1 3 25 25 H 1.09004 * 110.33263 * 60.70272 * 24 2 1 26 26 C 1.54473 * 110.37210 * 298.44932 * 24 2 1 27 27 C 1.54513 * 104.06589 * 217.19191 * 26 24 2 28 28 C 1.54479 * 104.05926 * 359.97438 * 27 26 24 29 29 O 1.44431 * 110.37481 * 182.95065 * 24 2 1 30 30 H 1.09001 * 109.46901 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47109 * 299.99798 * 1 2 3 32 32 H 1.08994 * 109.47182 * 60.00186 * 1 2 3 33 33 H 0.96995 * 120.00327 * 0.02562 * 6 4 2 34 34 H 1.08998 * 109.47108 * 60.00510 * 7 6 4 35 35 H 1.09002 * 109.47056 * 299.99734 * 7 6 4 36 36 H 1.09000 * 113.00869 * 316.63301 * 8 7 6 37 37 H 1.09002 * 113.76229 * 336.23742 * 9 8 7 38 38 H 1.09005 * 113.75703 * 107.49267 * 9 8 7 39 39 H 1.08997 * 109.47397 * 290.00293 * 11 10 9 40 40 H 1.09006 * 109.46564 * 49.99948 * 11 10 9 41 41 H 0.97002 * 119.99746 * 0.02562 * 14 12 11 42 42 H 0.97004 * 120.00081 * 179.97438 * 18 17 15 43 43 H 1.09003 * 113.75437 * 220.98675 * 23 10 9 44 44 H 1.08998 * 113.85723 * 89.64375 * 23 10 9 45 45 H 1.08999 * 110.51419 * 335.83814 * 26 24 2 46 46 H 1.09004 * 110.51532 * 98.40798 * 26 24 2 47 47 H 1.08999 * 110.51366 * 118.64630 * 27 26 24 48 48 H 1.09006 * 110.51176 * 241.22148 * 27 26 24 49 49 H 1.09001 * 110.37314 * 142.80985 * 28 27 26 50 50 H 1.08999 * 110.37159 * 265.03555 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 2.7296 -1.6966 -1.1193 6 7 1.7067 -0.2500 -2.4546 7 6 2.1946 -0.9409 -3.6508 8 6 1.6851 -0.2192 -4.9000 9 6 2.0396 -0.9342 -6.2164 10 7 2.3487 0.4102 -6.7517 11 6 3.5813 0.3881 -7.5506 12 6 3.7332 1.7002 -8.2762 13 8 2.8972 2.5684 -8.1407 14 7 4.7980 1.9088 -9.0756 15 6 4.9365 3.1026 -9.7353 16 1 4.1925 3.8760 -9.6140 17 6 6.0340 3.3175 -10.5599 18 7 6.1669 4.4619 -11.1918 19 14 7.3212 1.9800 -10.7690 20 1 6.9474 1.1075 -11.9111 21 1 8.6432 2.6023 -11.0336 22 1 7.3962 1.1668 -9.5287 23 6 2.6094 0.9137 -5.3813 24 6 2.0400 -0.7213 1.2492 25 1 1.6947 -1.7551 1.2571 26 6 1.5688 0.0129 2.5240 27 6 2.7651 -0.1132 3.4938 28 6 3.8173 -0.9093 2.6903 29 8 3.4824 -0.6726 1.3043 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.1493 0.5389 -2.5436 34 1 1.8308 -1.9684 -3.6506 35 1 3.2846 -0.9413 -3.6509 36 1 0.6370 0.0709 -4.8268 37 1 2.9089 -1.5874 -6.1411 38 1 1.1879 -1.4138 -6.6988 39 1 4.4374 0.2350 -6.8936 40 1 3.5298 -0.4243 -8.2756 41 1 5.4664 1.2142 -9.1842 42 1 6.9333 4.6121 -11.7672 43 1 2.2127 1.9122 -5.1975 44 1 3.6450 0.8019 -5.0601 45 1 1.3620 1.0608 2.3070 46 1 0.6851 -0.4716 2.9393 47 1 3.1497 0.8723 3.7561 48 1 2.4736 -0.6596 4.3909 49 1 4.8195 -0.5397 2.9070 50 1 3.7472 -1.9721 2.9220 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665328540.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:12 Heat of formation + Delta-G solvation = -81.791125 kcal Electronic energy + Delta-G solvation = -29063.341841 eV Core-core repulsion = 24898.718420 eV Total energy + Delta-G solvation = -4164.623420 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.65494 -40.05402 -38.98889 -37.89460 -34.92243 -34.41955 -33.89519 -32.27836 -31.68061 -30.91731 -28.48725 -27.44615 -26.10372 -25.27670 -24.54863 -22.90934 -22.25808 -21.27275 -20.41441 -19.58654 -19.30593 -18.31999 -17.58042 -16.87395 -16.29440 -16.21909 -16.05743 -15.84786 -15.38450 -15.19726 -15.03059 -14.75466 -14.45521 -14.11863 -13.98446 -13.57955 -13.38376 -13.29140 -12.99289 -12.77174 -12.65416 -12.48317 -12.36040 -12.12746 -12.09084 -11.98999 -11.58749 -11.56682 -11.50973 -11.35141 -11.14766 -11.02670 -10.74984 -10.70773 -10.57590 -10.03503 -9.95226 -9.86970 -9.53584 -9.24715 -8.80729 -8.27506 -8.14681 -6.28434 -3.79594 2.49141 2.90401 3.04383 3.08586 3.16606 3.48341 3.76752 3.86463 4.09547 4.12491 4.18720 4.31712 4.45482 4.49221 4.55272 4.57128 4.71293 4.73046 4.84981 4.94194 5.02828 5.08445 5.17757 5.19725 5.22808 5.28872 5.30765 5.32275 5.41493 5.42572 5.47153 5.50517 5.57206 5.58028 5.61413 5.63224 5.68250 5.71172 5.89313 5.96906 6.10366 6.27409 6.48330 6.54338 7.07585 7.29307 7.61167 8.06147 8.17244 8.63665 8.98483 9.45672 9.87782 10.84857 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017979 B = 0.001793 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.029254 B =15616.216459 C =16202.965873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 H 0.105 0.895 4 C 0.517 3.483 5 O -0.527 6.527 6 N -0.729 5.729 7 C 0.129 3.871 8 C -0.130 4.130 9 C 0.009 3.991 10 N -0.449 5.449 11 C 0.007 3.993 12 C 0.456 3.544 13 O -0.557 6.557 14 N -0.594 5.594 15 C -0.303 4.303 16 H 0.119 0.881 17 C 0.040 3.960 18 N -0.883 5.883 19 Si 0.880 3.120 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.270 1.270 23 C 0.014 3.986 24 C 0.096 3.904 25 H 0.074 0.926 26 C -0.151 4.151 27 C -0.156 4.156 28 C 0.042 3.958 29 O -0.356 6.356 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.401 0.599 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.369 0.631 42 H 0.273 0.727 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.090 0.910 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.063 -13.744 28.098 32.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 H 0.123 0.877 4 C 0.303 3.697 5 O -0.402 6.402 6 N -0.382 5.382 7 C 0.005 3.995 8 C -0.149 4.149 9 C -0.121 4.121 10 N -0.171 5.171 11 C -0.126 4.126 12 C 0.241 3.759 13 O -0.438 6.438 14 N -0.235 5.235 15 C -0.432 4.432 16 H 0.137 0.863 17 C -0.162 4.162 18 N -0.523 5.523 19 Si 0.706 3.294 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.196 1.196 23 C -0.114 4.114 24 C 0.037 3.963 25 H 0.092 0.908 26 C -0.189 4.189 27 C -0.194 4.194 28 C -0.035 4.035 29 O -0.274 6.274 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.235 0.765 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.202 0.798 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.108 0.892 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.298 -13.352 27.474 32.236 hybrid contribution 1.575 -0.957 0.165 1.850 sum -8.723 -14.308 27.639 32.322 Atomic orbital electron populations 1.21771 0.91843 1.03181 1.03362 1.21419 0.97545 1.01424 0.92495 0.87658 1.20438 0.80173 0.84728 0.84372 1.90732 1.36794 1.26112 1.86608 1.46009 1.54249 1.32356 1.05570 1.21408 0.99304 0.96084 0.82678 1.23269 1.01354 0.97213 0.93068 1.23956 1.01538 0.93115 0.93496 1.68482 1.28727 1.10067 1.09805 1.22520 0.92700 0.98708 0.98626 1.19594 0.83692 0.88953 0.83668 1.90555 1.42334 1.45442 1.65481 1.42229 1.21858 1.16305 1.43068 1.19421 1.09272 0.92322 1.22197 0.86335 1.25030 0.97648 0.96769 0.96778 1.69621 1.30303 1.22866 1.29524 0.86674 0.82069 0.81897 0.78746 1.19630 1.20205 1.19574 1.24121 0.98368 0.99689 0.89259 1.22714 0.82203 0.98631 0.92732 0.90816 1.23032 0.98671 1.01916 0.95275 1.22947 0.95918 1.01624 0.98899 1.23404 0.99133 0.99107 0.81822 1.89288 1.20046 1.92881 1.25233 0.91756 0.90992 0.91250 0.76454 0.91216 0.91347 0.87570 0.91130 0.88982 0.92313 0.89268 0.79796 0.91667 0.88939 0.91220 0.90343 0.90318 0.90613 0.90571 0.89163 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 8.88 37.16 0.33 -0.34 16 2 C -0.11 -0.80 2.40 -91.77 -0.22 -1.02 16 3 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 4 C 0.52 5.53 7.04 -10.98 -0.08 5.45 16 5 O -0.53 -7.90 15.44 -9.88 -0.15 -8.05 16 6 N -0.73 -6.39 5.45 -60.28 -0.33 -6.72 16 7 C 0.13 1.24 5.53 -4.04 -0.02 1.22 16 8 C -0.13 -1.28 3.94 -89.68 -0.35 -1.63 16 9 C 0.01 0.09 7.50 -2.77 -0.02 0.07 16 10 N -0.45 -7.02 5.66 -238.67 -1.35 -8.37 16 11 C 0.01 0.11 5.28 -4.97 -0.03 0.09 16 12 C 0.46 10.61 7.83 -10.98 -0.09 10.53 16 13 O -0.56 -15.36 16.01 5.55 0.09 -15.27 16 14 N -0.59 -14.47 5.09 -10.97 -0.06 -14.53 16 15 C -0.30 -8.73 10.16 -14.94 -0.15 -8.88 16 16 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 17 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 18 N -0.88 -26.10 13.96 55.50 0.77 -25.33 16 19 Si 0.88 19.69 27.74 -169.99 -4.71 14.97 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 23 C 0.01 0.19 7.52 -2.58 -0.02 0.17 16 24 C 0.10 0.80 2.29 -25.96 -0.06 0.74 16 25 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 26 C -0.15 -0.82 5.57 -25.16 -0.14 -0.97 16 27 C -0.16 -0.85 7.09 -25.16 -0.18 -1.03 16 28 C 0.04 0.33 7.63 37.93 0.29 0.61 16 29 O -0.36 -4.03 10.51 -50.66 -0.53 -4.56 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.23 7.21 -51.93 -0.37 -0.14 16 32 H 0.07 0.26 7.56 -51.93 -0.39 -0.14 16 33 H 0.40 2.57 7.89 -40.82 -0.32 2.25 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.76 7.83 -51.93 -0.41 0.36 16 36 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.69 7.88 -51.93 -0.41 0.29 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.88 7.39 -51.93 -0.38 0.49 16 40 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 41 H 0.37 7.90 5.76 -40.82 -0.24 7.66 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.07 0.91 7.24 -51.93 -0.38 0.54 16 45 H 0.08 0.37 7.73 -51.93 -0.40 -0.03 16 46 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 50 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 402.70 15.07 6.07 6.07 Total: -1.00 -37.50 402.70 -9.38 -46.88 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -8.35 Total: 8.86 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -0.83 Total: 6.05 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.96 Total: -54.94 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.60 Total: -27.89 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.71 Total: 14.97 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.50 -9.38 -46.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665328540.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.911 kcal (2) G-P(sol) polarization free energy of solvation -37.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds