Wall clock time and date at job start Sat Apr 11 2020 05:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47403 * 2 1 4 4 C 1.50708 * 109.47157 * 239.99958 * 2 1 3 5 5 O 1.21282 * 120.00225 * 240.00224 * 4 2 1 6 6 N 1.34778 * 119.99649 * 59.99786 * 4 2 1 7 7 C 1.46502 * 119.99512 * 180.02562 * 6 4 2 8 8 C 1.53010 * 109.46661 * 180.02562 * 7 6 4 9 9 C 1.53935 * 113.72848 * 185.00046 * 8 7 6 10 10 N 1.47962 * 86.30001 * 221.86345 * 9 8 7 11 11 C 1.46903 * 111.00056 * 137.63674 * 10 9 8 12 12 C 1.50700 * 109.47048 * 169.99964 * 11 10 9 13 13 O 1.21287 * 120.00092 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99908 * 180.02562 * 12 11 10 15 15 C 1.37093 * 120.00045 * 180.02562 * 14 12 11 16 16 H 1.07998 * 119.99958 * 0.02562 * 15 14 12 17 17 C 1.38949 * 120.00062 * 180.02562 * 15 14 12 18 18 N 1.31407 * 120.00011 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99890 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.46808 * 90.00563 * 19 17 15 21 21 H 1.48498 * 109.47104 * 210.00361 * 19 17 15 22 22 H 1.48500 * 109.47382 * 330.00644 * 19 17 15 23 23 C 1.48308 * 90.62534 * 24.68684 * 10 9 8 24 24 C 1.52996 * 109.47170 * 120.00170 * 2 1 3 25 25 H 1.09004 * 110.33263 * 60.70272 * 24 2 1 26 26 C 1.54473 * 110.37210 * 298.44932 * 24 2 1 27 27 C 1.54513 * 104.06589 * 217.19191 * 26 24 2 28 28 C 1.54479 * 104.05926 * 359.97438 * 27 26 24 29 29 O 1.44431 * 110.37481 * 182.95065 * 24 2 1 30 30 H 1.09001 * 109.46901 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47109 * 299.99798 * 1 2 3 32 32 H 1.08994 * 109.47182 * 60.00186 * 1 2 3 33 33 H 0.96995 * 120.00327 * 0.02562 * 6 4 2 34 34 H 1.08998 * 109.47108 * 60.00510 * 7 6 4 35 35 H 1.09002 * 109.47056 * 299.99734 * 7 6 4 36 36 H 1.09000 * 113.00869 * 316.63301 * 8 7 6 37 37 H 1.09002 * 113.76229 * 336.23742 * 9 8 7 38 38 H 1.09005 * 113.75703 * 107.49267 * 9 8 7 39 39 H 1.08997 * 109.47397 * 290.00293 * 11 10 9 40 40 H 1.09006 * 109.46564 * 49.99948 * 11 10 9 41 41 H 0.97002 * 119.99746 * 0.02562 * 14 12 11 42 42 H 0.97004 * 120.00081 * 179.97438 * 18 17 15 43 43 H 1.09003 * 113.75437 * 220.98675 * 23 10 9 44 44 H 1.08998 * 113.85723 * 89.64375 * 23 10 9 45 45 H 1.08999 * 110.51419 * 335.83814 * 26 24 2 46 46 H 1.09004 * 110.51532 * 98.40798 * 26 24 2 47 47 H 1.08999 * 110.51366 * 118.64630 * 27 26 24 48 48 H 1.09006 * 110.51176 * 241.22148 * 27 26 24 49 49 H 1.09001 * 110.37314 * 142.80985 * 28 27 26 50 50 H 1.08999 * 110.37159 * 265.03555 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 2.7296 -1.6966 -1.1193 6 7 1.7067 -0.2500 -2.4546 7 6 2.1946 -0.9409 -3.6508 8 6 1.6851 -0.2192 -4.9000 9 6 2.0396 -0.9342 -6.2164 10 7 2.3487 0.4102 -6.7517 11 6 3.5813 0.3881 -7.5506 12 6 3.7332 1.7002 -8.2762 13 8 2.8972 2.5684 -8.1407 14 7 4.7980 1.9088 -9.0756 15 6 4.9365 3.1026 -9.7353 16 1 4.1925 3.8760 -9.6140 17 6 6.0340 3.3175 -10.5599 18 7 6.1669 4.4619 -11.1918 19 14 7.3212 1.9800 -10.7690 20 1 6.9474 1.1075 -11.9111 21 1 8.6432 2.6023 -11.0336 22 1 7.3962 1.1668 -9.5287 23 6 2.6094 0.9137 -5.3813 24 6 2.0400 -0.7213 1.2492 25 1 1.6947 -1.7551 1.2571 26 6 1.5688 0.0129 2.5240 27 6 2.7651 -0.1132 3.4938 28 6 3.8173 -0.9093 2.6903 29 8 3.4824 -0.6726 1.3043 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.1493 0.5389 -2.5436 34 1 1.8308 -1.9684 -3.6506 35 1 3.2846 -0.9413 -3.6509 36 1 0.6370 0.0709 -4.8268 37 1 2.9089 -1.5874 -6.1411 38 1 1.1879 -1.4138 -6.6988 39 1 4.4374 0.2350 -6.8936 40 1 3.5298 -0.4243 -8.2756 41 1 5.4664 1.2142 -9.1842 42 1 6.9333 4.6121 -11.7672 43 1 2.2127 1.9122 -5.1975 44 1 3.6450 0.8019 -5.0601 45 1 1.3620 1.0608 2.3070 46 1 0.6851 -0.4716 2.9393 47 1 3.1497 0.8723 3.7561 48 1 2.4736 -0.6596 4.3909 49 1 4.8195 -0.5397 2.9070 50 1 3.7472 -1.9721 2.9220 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665328540.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:10 Heat of formation + Delta-G solvation = -112.629639 kcal Electronic energy + Delta-G solvation = -29064.679099 eV Core-core repulsion = 24898.718420 eV Total energy + Delta-G solvation = -4165.960679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -41.50511 -41.01918 -39.90477 -39.51971 -36.04854 -35.74519 -35.01183 -33.76897 -32.81777 -32.08288 -29.20985 -28.44169 -27.08180 -26.67278 -25.48464 -23.91331 -23.07655 -21.87999 -21.27269 -21.14424 -20.43891 -20.18132 -18.34224 -17.80785 -17.60233 -17.02547 -16.85780 -16.72100 -16.69019 -16.35079 -16.27963 -15.92947 -15.55234 -15.16415 -14.94500 -14.63868 -14.50065 -14.47458 -14.23480 -13.99418 -13.69342 -13.64014 -13.25936 -13.04693 -12.89863 -12.69714 -12.58664 -12.49627 -12.43587 -12.34793 -12.03917 -11.99692 -11.97709 -11.80555 -11.65789 -11.51582 -11.44725 -10.71697 -10.68161 -10.46060 -10.25243 -10.06264 -9.65014 -8.42328 -6.03019 1.28634 1.34092 1.42783 1.69467 1.95619 2.18165 2.21593 2.63704 2.94155 3.12487 3.21037 3.41383 3.59734 3.64870 3.71481 3.90859 4.00519 4.07951 4.11491 4.17443 4.21008 4.24882 4.34715 4.38428 4.40177 4.46367 4.49584 4.57315 4.63164 4.71644 4.78051 4.82894 4.85437 4.87601 4.88732 4.96804 5.01927 5.14726 5.21281 5.23278 5.28969 5.39868 5.50046 5.52750 5.90477 5.97125 6.03323 6.57801 6.59238 6.87724 7.29934 7.39252 7.97219 8.75441 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017979 B = 0.001793 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.029254 B =15616.216459 C =16202.965873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.114 0.886 4 C 0.512 3.488 5 O -0.576 6.576 6 N -0.720 5.720 7 C 0.136 3.864 8 C -0.102 4.102 9 C 0.016 3.984 10 N -0.487 5.487 11 C 0.019 3.981 12 C 0.452 3.548 13 O -0.609 6.609 14 N -0.594 5.594 15 C -0.328 4.328 16 H 0.054 0.946 17 C -0.016 4.016 18 N -0.934 5.934 19 Si 0.965 3.035 20 H -0.256 1.256 21 H -0.274 1.274 22 H -0.234 1.234 23 C 0.007 3.993 24 C 0.088 3.912 25 H 0.058 0.942 26 C -0.144 4.144 27 C -0.151 4.151 28 C 0.032 3.968 29 O -0.395 6.395 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.414 0.586 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.119 0.881 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.118 0.882 41 H 0.389 0.611 42 H 0.279 0.721 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.081 0.919 48 H 0.092 0.908 49 H 0.093 0.907 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.101 -16.305 29.608 35.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.124 4.124 3 H 0.132 0.868 4 C 0.299 3.701 5 O -0.455 6.455 6 N -0.372 5.372 7 C 0.012 3.988 8 C -0.121 4.121 9 C -0.113 4.113 10 N -0.209 5.209 11 C -0.113 4.113 12 C 0.240 3.760 13 O -0.493 6.493 14 N -0.237 5.237 15 C -0.458 4.458 16 H 0.072 0.928 17 C -0.214 4.214 18 N -0.575 5.575 19 Si 0.785 3.215 20 H -0.180 1.180 21 H -0.199 1.199 22 H -0.157 1.157 23 C -0.122 4.122 24 C 0.030 3.970 25 H 0.076 0.924 26 C -0.182 4.182 27 C -0.189 4.189 28 C -0.044 4.044 29 O -0.315 6.315 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.251 0.749 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.137 0.863 37 H 0.108 0.892 38 H 0.124 0.876 39 H 0.104 0.896 40 H 0.136 0.864 41 H 0.224 0.776 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.108 0.892 46 H 0.115 0.885 47 H 0.099 0.901 48 H 0.111 0.889 49 H 0.111 0.889 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.372 -15.911 28.998 34.664 hybrid contribution 1.498 -0.070 -0.297 1.529 sum -8.874 -15.981 28.701 34.028 Atomic orbital electron populations 1.21792 0.89398 1.03411 1.05011 1.21486 0.99405 1.01031 0.90519 0.86833 1.21062 0.79318 0.84187 0.85540 1.90706 1.39087 1.28406 1.87334 1.45959 1.53788 1.32477 1.05015 1.21280 0.98481 0.96332 0.82754 1.23060 1.01128 0.95175 0.92786 1.24066 1.02735 0.91374 0.93128 1.68435 1.28296 1.13366 1.10841 1.22454 0.94655 0.94833 0.99316 1.20933 0.82029 0.90699 0.82380 1.90527 1.43973 1.47954 1.66806 1.42074 1.23043 1.15319 1.43240 1.18997 1.08987 0.93198 1.24572 0.92770 1.26112 1.00035 0.99969 0.95306 1.69803 1.31586 1.25821 1.30303 0.85363 0.77393 0.78172 0.80571 1.18038 1.19943 1.15700 1.24158 0.99286 0.99882 0.88892 1.22856 0.81136 0.98434 0.94573 0.92406 1.23034 0.99170 1.02331 0.93647 1.22946 0.95134 1.01719 0.99101 1.23584 1.00225 0.99606 0.81024 1.89245 1.21906 1.93066 1.27249 0.92208 0.88960 0.90026 0.74942 0.90759 0.92734 0.86335 0.89240 0.87608 0.89617 0.86364 0.77591 0.91145 0.90957 0.91021 0.89220 0.88469 0.90063 0.88916 0.88891 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.88 71.98 0.64 -0.32 16 2 C -0.10 -1.42 2.40 -11.54 -0.03 -1.45 16 3 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 4 C 0.51 10.63 7.04 87.66 0.62 11.25 16 5 O -0.58 -17.50 15.44 11.72 0.18 -17.31 16 6 N -0.72 -11.60 5.45 -463.03 -2.52 -14.12 16 7 C 0.14 2.37 5.53 86.38 0.48 2.85 16 8 C -0.10 -1.79 3.94 -10.15 -0.04 -1.83 16 9 C 0.02 0.29 7.50 86.41 0.65 0.94 16 10 N -0.49 -14.36 5.66 -909.03 -5.15 -19.50 16 11 C 0.02 0.60 5.28 85.56 0.45 1.05 16 12 C 0.45 21.11 7.83 87.66 0.69 21.80 16 13 O -0.61 -34.93 16.01 -3.05 -0.05 -34.97 16 14 N -0.59 -28.85 5.09 -306.99 -1.56 -30.41 16 15 C -0.33 -19.66 10.16 84.04 0.85 -18.81 16 16 H 0.05 3.86 7.39 -2.91 -0.02 3.84 16 17 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 18 N -0.93 -57.11 13.96 21.66 0.30 -56.81 16 19 Si 0.97 39.57 27.74 68.60 1.90 41.47 16 20 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.23 -8.13 6.52 99.48 0.65 -7.48 16 23 C 0.01 0.17 7.52 86.34 0.65 0.82 16 24 C 0.09 1.42 2.29 31.09 0.07 1.49 16 25 H 0.06 1.07 8.10 -2.38 -0.02 1.05 16 26 C -0.14 -1.27 5.57 31.61 0.18 -1.10 16 27 C -0.15 -1.40 7.09 31.61 0.22 -1.18 16 28 C 0.03 0.49 7.63 72.48 0.55 1.04 16 29 O -0.40 -9.08 10.51 -134.22 -1.41 -10.49 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.09 0.30 7.21 -2.39 -0.02 0.28 16 32 H 0.08 0.37 7.56 -2.39 -0.02 0.36 16 33 H 0.41 4.51 7.89 -92.71 -0.73 3.78 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.05 1.14 7.83 -2.39 -0.02 1.12 16 36 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.09 1.39 7.88 -2.39 -0.02 1.38 16 38 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.09 2.26 7.39 -2.39 -0.02 2.24 16 40 H 0.12 3.05 8.08 -2.38 -0.02 3.03 16 41 H 0.39 15.63 5.76 -92.71 -0.53 15.10 16 42 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 43 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.07 1.79 7.24 -2.39 -0.02 1.77 16 45 H 0.09 0.60 7.73 -2.39 -0.02 0.58 16 46 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 47 H 0.08 0.66 8.14 -2.39 -0.02 0.65 16 48 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 49 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -89.15 402.70 -2.23 -91.38 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: -0.37 Total: 34.62 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 6.45 Total: 16.15 kcal Atomic # 7 Polarization: -111.91 SS G_CDS: -8.93 Total: -120.84 kcal Atomic # 8 Polarization: -61.50 SS G_CDS: -1.28 Total: -62.78 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 1.90 Total: 41.47 kcal Total: -89.15 -2.23 -91.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665328540.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.250 kcal (2) G-P(sol) polarization free energy of solvation -89.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds