Wall clock time and date at job start Sat Apr 11 2020 05:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46861 * 2 1 4 4 C 1.50697 * 109.47293 * 239.99625 * 2 1 3 5 5 O 1.21274 * 120.00013 * 240.00241 * 4 2 1 6 6 N 1.34783 * 119.99832 * 59.99760 * 4 2 1 7 7 C 1.46498 * 119.99644 * 180.02562 * 6 4 2 8 8 C 1.53006 * 109.46967 * 180.02562 * 7 6 4 9 9 C 1.53933 * 113.73283 * 271.72832 * 8 7 6 10 10 N 1.47964 * 86.17922 * 221.92092 * 9 8 7 11 11 C 1.46895 * 110.99785 * 137.58107 * 10 9 8 12 12 C 1.50703 * 109.46938 * 90.64256 * 11 10 9 13 13 O 1.21290 * 120.00091 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99773 * 179.97438 * 12 11 10 15 15 C 1.37095 * 119.99853 * 179.97438 * 14 12 11 16 16 H 1.08004 * 120.00365 * 0.02562 * 15 14 12 17 17 C 1.38956 * 120.00166 * 179.97438 * 15 14 12 18 18 N 1.31415 * 119.99945 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00167 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46963 * 59.99887 * 19 17 15 21 21 H 1.48495 * 109.47023 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46635 * 299.99988 * 19 17 15 23 23 C 1.47966 * 90.76316 * 24.68617 * 10 9 8 24 24 C 1.52998 * 109.47048 * 119.99388 * 2 1 3 25 25 H 1.09002 * 109.87039 * 179.30091 * 24 2 1 26 26 C 1.54104 * 109.88136 * 300.30973 * 24 2 1 27 27 C 1.54805 * 104.18715 * 121.60340 * 26 24 2 28 28 C 1.54993 * 102.09764 * 20.87963 * 27 26 24 29 29 O 1.43741 * 110.00290 * 58.21357 * 24 2 1 30 30 H 1.08990 * 109.47080 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47145 * 300.00694 * 1 2 3 32 32 H 1.09006 * 109.47101 * 60.00140 * 1 2 3 33 33 H 0.96997 * 120.00190 * 0.02562 * 6 4 2 34 34 H 1.09008 * 109.47335 * 299.99638 * 7 6 4 35 35 H 1.08998 * 109.47258 * 60.00011 * 7 6 4 36 36 H 1.09003 * 112.93597 * 43.43163 * 8 7 6 37 37 H 1.09001 * 113.75449 * 336.23378 * 9 8 7 38 38 H 1.08996 * 113.76188 * 107.60042 * 9 8 7 39 39 H 1.09009 * 109.46760 * 210.63595 * 11 10 9 40 40 H 1.09001 * 109.47687 * 330.63723 * 11 10 9 41 41 H 0.97005 * 120.00103 * 0.02562 * 14 12 11 42 42 H 0.96993 * 120.00065 * 179.97438 * 18 17 15 43 43 H 1.08996 * 113.75660 * 220.98961 * 23 10 9 44 44 H 1.09006 * 113.75626 * 89.62750 * 23 10 9 45 45 H 1.09004 * 110.48326 * 240.27942 * 26 24 2 46 46 H 1.09002 * 110.48549 * 2.79321 * 26 24 2 47 47 H 1.09004 * 110.90856 * 139.08289 * 27 26 24 48 48 H 1.09008 * 110.90524 * 262.68042 * 27 26 24 49 49 H 1.09000 * 110.61715 * 81.47543 * 28 27 26 50 50 H 1.08993 * 110.61889 * 204.31920 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6965 -1.1190 6 7 1.7068 -0.2501 -2.4546 7 6 2.1947 -0.9411 -3.6506 8 6 1.6853 -0.2195 -4.9000 9 6 0.3083 -0.7114 -5.3814 10 7 0.8690 -0.6344 -6.7485 11 6 0.4753 -1.8038 -7.5455 12 6 -0.8136 -1.5082 -8.2684 13 8 -1.3514 -0.4296 -8.1325 14 7 -1.3685 -2.4423 -9.0658 15 6 -2.5413 -2.1736 -9.7230 16 1 -3.0203 -1.2132 -9.6021 17 6 -3.1132 -3.1365 -10.5455 18 7 -2.5302 -4.3049 -10.6931 19 14 -4.7108 -2.7700 -11.4416 20 1 -4.5191 -1.6011 -12.3371 21 1 -5.1085 -3.9520 -12.2477 22 1 -5.7750 -2.4659 -10.4515 23 6 2.2405 -0.7928 -6.2162 24 6 2.0400 -0.7211 1.2493 25 1 3.1299 -0.7358 1.2497 26 6 1.5251 -0.0064 2.5138 27 6 0.7318 -1.0991 3.2707 28 6 1.3188 -2.4017 2.6700 29 8 1.5331 -2.0658 1.2822 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.1494 0.5387 -2.5436 34 1 3.2848 -0.9414 -3.6508 35 1 1.8310 -1.9686 -3.6504 36 1 1.7643 0.8651 -4.8260 37 1 0.0680 -1.7254 -5.0618 38 1 -0.4998 -0.0034 -5.1976 39 1 1.2563 -2.0278 -8.2722 40 1 0.3345 -2.6614 -6.8875 41 1 -0.9385 -3.3051 -9.1741 42 1 -2.9296 -4.9772 -11.2670 43 1 2.9761 -0.1499 -6.6996 44 1 2.5652 -1.8306 -6.1408 45 1 2.3601 0.3470 3.1189 46 1 0.8725 0.8238 2.2437 47 1 0.9213 -1.0453 4.3428 48 1 -0.3351 -1.0206 3.0614 49 1 2.2620 -2.6562 3.1533 50 1 0.6074 -3.2221 2.7634 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665328542.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:26 Heat of formation + Delta-G solvation = -86.177414 kcal Electronic energy + Delta-G solvation = -29176.057388 eV Core-core repulsion = 25011.243764 eV Total energy + Delta-G solvation = -4164.813624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 3.62 seconds Orbital eigenvalues (eV) -40.67832 -40.02969 -38.93648 -37.69708 -34.86138 -34.14606 -33.83215 -32.26206 -31.30862 -30.70679 -28.51269 -27.31470 -26.03544 -25.30487 -24.63547 -22.83864 -22.26462 -21.31918 -20.29659 -19.44338 -19.12733 -17.87669 -17.48297 -16.68152 -16.53657 -16.16305 -15.86958 -15.82542 -15.29230 -15.12662 -14.90460 -14.60810 -14.42344 -14.10355 -13.82525 -13.70453 -13.57771 -13.26092 -12.95523 -12.57555 -12.51111 -12.36987 -12.15828 -12.02754 -11.85854 -11.61020 -11.56503 -11.42466 -11.39435 -11.27101 -11.03214 -11.00045 -10.66067 -10.63120 -10.41847 -10.17678 -9.90951 -9.79834 -9.45851 -9.19050 -8.69605 -8.13993 -7.92475 -6.38128 -3.78884 2.54348 2.96865 3.22174 3.27409 3.31870 3.54358 3.92228 3.97229 4.09300 4.22650 4.26187 4.37565 4.50935 4.52471 4.60825 4.63548 4.69000 4.90829 4.95831 5.00239 5.10047 5.17208 5.22801 5.24311 5.32385 5.37108 5.40051 5.42644 5.47188 5.51636 5.56300 5.57330 5.61779 5.68682 5.71672 5.75995 5.79683 5.89988 5.97367 6.16287 6.31382 6.33795 6.61100 6.65929 7.19993 7.35018 7.58026 8.09498 8.11961 8.66117 9.21902 9.58678 10.11300 10.79736 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018040 B = 0.001773 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.712472 B =15788.840346 C =16486.750345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 H 0.106 0.894 4 C 0.517 3.483 5 O -0.526 6.526 6 N -0.730 5.730 7 C 0.129 3.871 8 C -0.130 4.130 9 C 0.016 3.984 10 N -0.449 5.449 11 C 0.010 3.990 12 C 0.447 3.553 13 O -0.577 6.577 14 N -0.567 5.567 15 C -0.298 4.298 16 H 0.102 0.898 17 C 0.021 3.979 18 N -0.903 5.903 19 Si 0.931 3.069 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.008 3.992 24 C 0.097 3.903 25 H 0.072 0.928 26 C -0.155 4.155 27 C -0.155 4.155 28 C 0.043 3.957 29 O -0.352 6.352 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.400 0.600 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.391 0.609 42 H 0.271 0.729 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.058 0.942 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.925 7.433 26.730 29.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.132 4.132 3 H 0.124 0.876 4 C 0.302 3.698 5 O -0.401 6.401 6 N -0.382 5.382 7 C 0.005 3.995 8 C -0.149 4.149 9 C -0.113 4.113 10 N -0.171 5.171 11 C -0.122 4.122 12 C 0.232 3.768 13 O -0.460 6.460 14 N -0.205 5.205 15 C -0.428 4.428 16 H 0.120 0.880 17 C -0.180 4.180 18 N -0.545 5.545 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.200 1.200 23 C -0.121 4.121 24 C 0.039 3.961 25 H 0.090 0.910 26 C -0.193 4.193 27 C -0.193 4.193 28 C -0.034 4.034 29 O -0.271 6.271 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.235 0.765 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.076 0.924 41 H 0.224 0.776 42 H 0.081 0.919 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.097 0.903 48 H 0.096 0.904 49 H 0.076 0.924 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.803 7.666 26.127 29.294 hybrid contribution -0.603 -0.750 -0.097 0.968 sum 10.200 6.916 26.030 28.800 Atomic orbital electron populations 1.21770 0.92187 1.03710 1.02467 1.21554 0.98602 1.00169 0.92902 0.87648 1.20444 0.80267 0.84699 0.84353 1.90733 1.37295 1.25506 1.86593 1.46017 1.54264 1.32338 1.05603 1.21411 0.99200 0.96190 0.82689 1.23282 0.97227 1.01324 0.93100 1.24040 0.96725 1.01064 0.89464 1.68377 1.02493 1.36457 1.09798 1.22485 0.98598 0.92642 0.98522 1.19695 0.86986 0.85978 0.84168 1.90511 1.64430 1.24426 1.66608 1.41875 1.22687 1.14977 1.40921 1.19643 0.99083 1.01516 1.22557 0.88042 1.25257 0.99765 0.95054 0.97949 1.69605 1.40313 1.05219 1.39338 0.85919 0.81392 0.77649 0.79257 1.19918 1.21001 1.19957 1.23957 0.94160 1.00551 0.93454 1.22439 0.98035 0.82925 0.92744 0.90980 1.23083 1.00661 0.99228 0.96312 1.23134 1.00785 0.94993 1.00350 1.23548 0.99815 0.97307 0.82770 1.89042 1.85441 1.28759 1.23820 0.91103 0.91439 0.91925 0.76523 0.91265 0.91324 0.87693 0.91298 0.89117 0.89420 0.92427 0.77551 0.91874 0.89071 0.91110 0.90548 0.89909 0.90342 0.90432 0.92357 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.67 37.16 0.32 -0.65 16 2 C -0.11 -0.85 2.52 -91.77 -0.23 -1.08 16 3 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.52 5.70 7.02 -10.98 -0.08 5.62 16 5 O -0.53 -8.09 15.37 -11.15 -0.17 -8.26 16 6 N -0.73 -6.73 5.45 -60.29 -0.33 -7.06 16 7 C 0.13 1.32 5.53 -4.04 -0.02 1.30 16 8 C -0.13 -1.37 3.94 -89.69 -0.35 -1.72 16 9 C 0.02 0.22 7.51 -2.77 -0.02 0.20 16 10 N -0.45 -7.41 5.65 -239.73 -1.35 -8.76 16 11 C 0.01 0.17 5.28 -4.98 -0.03 0.15 16 12 C 0.45 10.86 7.83 -10.98 -0.09 10.77 16 13 O -0.58 -16.12 16.01 5.55 0.09 -16.03 16 14 N -0.57 -14.72 5.29 -10.96 -0.06 -14.78 16 15 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 16 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 17 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 18 N -0.90 -24.95 13.05 55.50 0.72 -24.23 16 19 Si 0.93 21.36 29.55 -169.99 -5.02 16.34 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 C 0.01 0.10 7.52 -2.76 -0.02 0.08 16 24 C 0.10 0.82 2.66 -26.16 -0.07 0.75 16 25 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 26 C -0.16 -0.83 6.15 -25.20 -0.15 -0.99 16 27 C -0.15 -0.83 7.15 -24.73 -0.18 -1.00 16 28 C 0.04 0.32 7.72 38.21 0.29 0.61 16 29 O -0.35 -3.91 9.53 -51.94 -0.49 -4.40 16 30 H 0.07 0.64 7.66 -51.93 -0.40 0.24 16 31 H 0.07 0.35 6.39 -51.93 -0.33 0.01 16 32 H 0.06 0.36 7.57 -51.93 -0.39 -0.03 16 33 H 0.40 2.75 7.89 -40.82 -0.32 2.43 16 34 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 35 H 0.07 0.81 7.84 -51.93 -0.41 0.41 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.96 7.23 -51.93 -0.38 0.59 16 38 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.09 1.45 8.08 -51.92 -0.42 1.03 16 40 H 0.06 0.95 7.38 -51.93 -0.38 0.56 16 41 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 42 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.07 0.77 7.88 -51.93 -0.41 0.36 16 45 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.35 6.22 -51.93 -0.32 0.03 16 47 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 48 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 402.89 15.07 6.07 6.07 Total: -1.00 -36.10 402.89 -9.65 -45.75 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -8.24 Total: 9.47 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -0.86 Total: 5.89 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -1.02 Total: -54.83 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.58 Total: -28.69 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.10 -9.65 -45.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665328542.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.427 kcal (2) G-P(sol) polarization free energy of solvation -36.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.63 seconds