Wall clock time and date at job start Sat Apr 11 2020 05:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46861 * 2 1 4 4 C 1.50697 * 109.47293 * 239.99625 * 2 1 3 5 5 O 1.21274 * 120.00013 * 240.00241 * 4 2 1 6 6 N 1.34783 * 119.99832 * 59.99760 * 4 2 1 7 7 C 1.46498 * 119.99644 * 180.02562 * 6 4 2 8 8 C 1.53006 * 109.46967 * 180.02562 * 7 6 4 9 9 C 1.53933 * 113.73283 * 271.72832 * 8 7 6 10 10 N 1.47964 * 86.17922 * 221.92092 * 9 8 7 11 11 C 1.46895 * 110.99785 * 137.58107 * 10 9 8 12 12 C 1.50703 * 109.46938 * 90.64256 * 11 10 9 13 13 O 1.21290 * 120.00091 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99773 * 179.97438 * 12 11 10 15 15 C 1.37095 * 119.99853 * 179.97438 * 14 12 11 16 16 H 1.08004 * 120.00365 * 0.02562 * 15 14 12 17 17 C 1.38956 * 120.00166 * 179.97438 * 15 14 12 18 18 N 1.31415 * 119.99945 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00167 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46963 * 59.99887 * 19 17 15 21 21 H 1.48495 * 109.47023 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46635 * 299.99988 * 19 17 15 23 23 C 1.47966 * 90.76316 * 24.68617 * 10 9 8 24 24 C 1.52998 * 109.47048 * 119.99388 * 2 1 3 25 25 H 1.09002 * 109.87039 * 179.30091 * 24 2 1 26 26 C 1.54104 * 109.88136 * 300.30973 * 24 2 1 27 27 C 1.54805 * 104.18715 * 121.60340 * 26 24 2 28 28 C 1.54993 * 102.09764 * 20.87963 * 27 26 24 29 29 O 1.43741 * 110.00290 * 58.21357 * 24 2 1 30 30 H 1.08990 * 109.47080 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47145 * 300.00694 * 1 2 3 32 32 H 1.09006 * 109.47101 * 60.00140 * 1 2 3 33 33 H 0.96997 * 120.00190 * 0.02562 * 6 4 2 34 34 H 1.09008 * 109.47335 * 299.99638 * 7 6 4 35 35 H 1.08998 * 109.47258 * 60.00011 * 7 6 4 36 36 H 1.09003 * 112.93597 * 43.43163 * 8 7 6 37 37 H 1.09001 * 113.75449 * 336.23378 * 9 8 7 38 38 H 1.08996 * 113.76188 * 107.60042 * 9 8 7 39 39 H 1.09009 * 109.46760 * 210.63595 * 11 10 9 40 40 H 1.09001 * 109.47687 * 330.63723 * 11 10 9 41 41 H 0.97005 * 120.00103 * 0.02562 * 14 12 11 42 42 H 0.96993 * 120.00065 * 179.97438 * 18 17 15 43 43 H 1.08996 * 113.75660 * 220.98961 * 23 10 9 44 44 H 1.09006 * 113.75626 * 89.62750 * 23 10 9 45 45 H 1.09004 * 110.48326 * 240.27942 * 26 24 2 46 46 H 1.09002 * 110.48549 * 2.79321 * 26 24 2 47 47 H 1.09004 * 110.90856 * 139.08289 * 27 26 24 48 48 H 1.09008 * 110.90524 * 262.68042 * 27 26 24 49 49 H 1.09000 * 110.61715 * 81.47543 * 28 27 26 50 50 H 1.08993 * 110.61889 * 204.31920 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6965 -1.1190 6 7 1.7068 -0.2501 -2.4546 7 6 2.1947 -0.9411 -3.6506 8 6 1.6853 -0.2195 -4.9000 9 6 0.3083 -0.7114 -5.3814 10 7 0.8690 -0.6344 -6.7485 11 6 0.4753 -1.8038 -7.5455 12 6 -0.8136 -1.5082 -8.2684 13 8 -1.3514 -0.4296 -8.1325 14 7 -1.3685 -2.4423 -9.0658 15 6 -2.5413 -2.1736 -9.7230 16 1 -3.0203 -1.2132 -9.6021 17 6 -3.1132 -3.1365 -10.5455 18 7 -2.5302 -4.3049 -10.6931 19 14 -4.7108 -2.7700 -11.4416 20 1 -4.5191 -1.6011 -12.3371 21 1 -5.1085 -3.9520 -12.2477 22 1 -5.7750 -2.4659 -10.4515 23 6 2.2405 -0.7928 -6.2162 24 6 2.0400 -0.7211 1.2493 25 1 3.1299 -0.7358 1.2497 26 6 1.5251 -0.0064 2.5138 27 6 0.7318 -1.0991 3.2707 28 6 1.3188 -2.4017 2.6700 29 8 1.5331 -2.0658 1.2822 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.1494 0.5387 -2.5436 34 1 3.2848 -0.9414 -3.6508 35 1 1.8310 -1.9686 -3.6504 36 1 1.7643 0.8651 -4.8260 37 1 0.0680 -1.7254 -5.0618 38 1 -0.4998 -0.0034 -5.1976 39 1 1.2563 -2.0278 -8.2722 40 1 0.3345 -2.6614 -6.8875 41 1 -0.9385 -3.3051 -9.1741 42 1 -2.9296 -4.9772 -11.2670 43 1 2.9761 -0.1499 -6.6996 44 1 2.5652 -1.8306 -6.1408 45 1 2.3601 0.3470 3.1189 46 1 0.8725 0.8238 2.2437 47 1 0.9213 -1.0453 4.3428 48 1 -0.3351 -1.0206 3.0614 49 1 2.2620 -2.6562 3.1533 50 1 0.6074 -3.2221 2.7634 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665328542.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:25 Heat of formation + Delta-G solvation = -114.424102 kcal Electronic energy + Delta-G solvation = -29177.282257 eV Core-core repulsion = 25011.243764 eV Total energy + Delta-G solvation = -4166.038492 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.52709 -41.05464 -39.84756 -39.44250 -36.01371 -35.72342 -34.79125 -33.31090 -32.79652 -31.98691 -29.22006 -28.42922 -27.09620 -26.75317 -25.66430 -23.95546 -22.98066 -21.95904 -21.13575 -21.00241 -20.27608 -19.88497 -18.27331 -17.81263 -17.48011 -17.18206 -16.74761 -16.66642 -16.59160 -16.31587 -16.24109 -15.90931 -15.63611 -15.40157 -14.86871 -14.77295 -14.50369 -14.28515 -14.16019 -13.72321 -13.65163 -13.50174 -13.14562 -12.97476 -12.85445 -12.66975 -12.51355 -12.45055 -12.41585 -12.35593 -12.13534 -12.07242 -11.91338 -11.80097 -11.66004 -11.49717 -11.44829 -10.68627 -10.55265 -10.37883 -10.05498 -10.01982 -9.64325 -8.46957 -5.96083 1.39148 1.40387 1.51836 1.71426 2.05178 2.20128 2.28400 2.78060 2.99446 3.18926 3.33040 3.45556 3.59027 3.67382 3.74873 3.91194 4.03148 4.10115 4.12270 4.17500 4.20312 4.27084 4.36572 4.43174 4.44454 4.47357 4.51478 4.62229 4.66549 4.72672 4.79810 4.83243 4.85219 4.87999 4.95722 4.96038 4.98380 5.16503 5.23538 5.25697 5.36806 5.39010 5.42197 5.50938 5.89626 6.08239 6.08891 6.59821 6.60425 7.12213 7.32525 7.55831 8.12136 8.70308 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018040 B = 0.001773 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.712472 B =15788.840346 C =16486.750345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 H 0.139 0.861 4 C 0.511 3.489 5 O -0.577 6.577 6 N -0.720 5.720 7 C 0.136 3.864 8 C -0.100 4.100 9 C 0.009 3.991 10 N -0.483 5.483 11 C 0.023 3.977 12 C 0.442 3.558 13 O -0.618 6.618 14 N -0.577 5.577 15 C -0.334 4.334 16 H 0.078 0.922 17 C -0.015 4.015 18 N -0.921 5.921 19 Si 0.994 3.006 20 H -0.271 1.271 21 H -0.270 1.270 22 H -0.271 1.271 23 C 0.013 3.987 24 C 0.089 3.911 25 H 0.054 0.946 26 C -0.147 4.147 27 C -0.148 4.148 28 C 0.032 3.968 29 O -0.390 6.390 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.414 0.586 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.121 0.879 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.395 0.605 42 H 0.278 0.722 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.079 0.921 49 H 0.059 0.941 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.112 8.677 27.754 31.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.127 4.127 3 H 0.157 0.843 4 C 0.298 3.702 5 O -0.455 6.455 6 N -0.373 5.373 7 C 0.011 3.989 8 C -0.119 4.119 9 C -0.120 4.120 10 N -0.205 5.205 11 C -0.109 4.109 12 C 0.229 3.771 13 O -0.504 6.504 14 N -0.214 5.214 15 C -0.464 4.464 16 H 0.096 0.904 17 C -0.214 4.214 18 N -0.562 5.562 19 Si 0.818 3.182 20 H -0.197 1.197 21 H -0.194 1.194 22 H -0.197 1.197 23 C -0.116 4.116 24 C 0.030 3.970 25 H 0.072 0.928 26 C -0.185 4.185 27 C -0.186 4.186 28 C -0.045 4.045 29 O -0.309 6.309 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.251 0.749 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.139 0.861 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.125 0.875 40 H 0.094 0.906 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.124 0.876 44 H 0.103 0.897 45 H 0.107 0.893 46 H 0.119 0.881 47 H 0.115 0.885 48 H 0.098 0.902 49 H 0.077 0.923 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.998 8.922 27.156 30.627 hybrid contribution -0.621 -1.152 -0.402 1.369 sum 10.377 7.770 26.754 29.729 Atomic orbital electron populations 1.21751 0.91339 1.02413 1.04130 1.21646 0.99092 1.01201 0.90760 0.84331 1.21115 0.79363 0.84147 0.85537 1.90709 1.39699 1.27810 1.87324 1.45954 1.53865 1.32448 1.04988 1.21256 0.99315 0.95373 0.82907 1.23064 0.94251 1.02016 0.92612 1.24071 0.98170 1.00841 0.88900 1.68344 1.05378 1.35933 1.10866 1.22359 0.95471 0.94077 0.99005 1.20806 0.88318 0.84840 0.83136 1.90472 1.66091 1.26059 1.67738 1.41967 1.22471 1.15546 1.41456 1.19629 1.00768 1.01328 1.24671 0.90374 1.26071 1.02740 0.94628 0.97994 1.69670 1.41444 1.05670 1.39458 0.84973 0.77278 0.77919 0.78066 1.19663 1.19433 1.19664 1.24074 0.92140 1.01924 0.93434 1.22575 0.97213 0.82551 0.94630 0.92770 1.23075 1.01340 0.99257 0.94804 1.23117 1.00722 0.93487 1.01247 1.23727 1.00189 0.98759 0.81776 1.89009 1.85672 1.30422 1.25829 0.93829 0.89220 0.90821 0.74920 0.90844 0.93016 0.86092 0.91513 0.90599 0.87502 0.90633 0.77108 0.91308 0.87568 0.89732 0.89268 0.88126 0.88522 0.90198 0.92256 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.67 71.98 0.62 -1.01 16 2 C -0.11 -1.46 2.52 -11.54 -0.03 -1.49 16 3 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 4 C 0.51 10.99 7.02 87.66 0.62 11.61 16 5 O -0.58 -18.15 15.37 12.97 0.20 -17.95 16 6 N -0.72 -12.31 5.45 -463.05 -2.52 -14.84 16 7 C 0.14 2.61 5.53 86.38 0.48 3.09 16 8 C -0.10 -1.92 3.94 -10.15 -0.04 -1.96 16 9 C 0.01 0.25 7.51 86.40 0.65 0.90 16 10 N -0.48 -15.41 5.65 -912.38 -5.15 -20.56 16 11 C 0.02 0.80 5.28 85.56 0.45 1.26 16 12 C 0.44 21.82 7.83 87.66 0.69 22.50 16 13 O -0.62 -35.45 16.01 -3.06 -0.05 -35.50 16 14 N -0.58 -30.54 5.29 -306.98 -1.62 -32.16 16 15 C -0.33 -19.45 9.68 84.04 0.81 -18.64 16 16 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 17 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 18 N -0.92 -50.70 13.05 21.67 0.28 -50.41 16 19 Si 0.99 43.63 29.55 68.60 2.03 45.66 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 C 0.01 0.28 7.52 86.40 0.65 0.93 16 24 C 0.09 1.44 2.66 30.97 0.08 1.52 16 25 H 0.05 1.03 8.09 -2.39 -0.02 1.01 16 26 C -0.15 -1.25 6.15 31.58 0.19 -1.06 16 27 C -0.15 -1.32 7.15 31.89 0.23 -1.09 16 28 C 0.03 0.48 7.72 72.66 0.56 1.04 16 29 O -0.39 -8.88 9.53 -133.00 -1.27 -10.15 16 30 H 0.04 0.77 7.66 -2.39 -0.02 0.75 16 31 H 0.09 0.66 6.39 -2.39 -0.02 0.64 16 32 H 0.07 0.69 7.57 -2.38 -0.02 0.67 16 33 H 0.41 4.81 7.89 -92.71 -0.73 4.08 16 34 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.05 1.20 7.84 -2.39 -0.02 1.18 16 36 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 1.85 7.23 -2.39 -0.02 1.83 16 38 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.11 3.37 8.08 -2.38 -0.02 3.35 16 40 H 0.08 2.41 7.38 -2.39 -0.02 2.39 16 41 H 0.40 19.88 7.90 -92.70 -0.73 19.15 16 42 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 43 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.08 1.62 7.88 -2.38 -0.02 1.60 16 45 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 46 H 0.10 0.50 6.22 -2.39 -0.01 0.48 16 47 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 48 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 49 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -81.20 402.89 -2.18 -83.38 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: -0.51 Total: 35.28 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 6.43 Total: 17.25 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -9.02 Total: -117.98 kcal Atomic # 8 Polarization: -62.48 SS G_CDS: -1.12 Total: -63.60 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -81.20 -2.18 -83.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665328542.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.041 kcal (2) G-P(sol) polarization free energy of solvation -81.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds