Wall clock time and date at job start Sat Apr 11 2020 05:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.50703 * 109.47060 * 119.99462 * 2 1 3 5 5 O 1.21279 * 119.99699 * 120.00470 * 4 2 1 6 6 N 1.34780 * 119.99859 * 299.99810 * 4 2 1 7 7 C 1.46502 * 119.99515 * 179.97438 * 6 4 2 8 8 C 1.52998 * 109.46663 * 180.02562 * 7 6 4 9 9 C 1.53942 * 113.73715 * 271.73029 * 8 7 6 10 10 N 1.47962 * 86.17951 * 221.92139 * 9 8 7 11 11 C 1.46906 * 110.99760 * 137.58088 * 10 9 8 12 12 C 1.50700 * 109.46982 * 70.64016 * 11 10 9 13 13 O 1.21293 * 119.99953 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99945 * 179.97438 * 12 11 10 15 15 C 1.37098 * 119.99871 * 180.02562 * 14 12 11 16 16 H 1.08007 * 119.99993 * 0.02562 * 15 14 12 17 17 C 1.38949 * 120.00308 * 180.02562 * 15 14 12 18 18 N 1.31415 * 119.99507 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00461 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47095 * 59.99941 * 19 17 15 21 21 H 1.48496 * 109.47194 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46980 * 299.99821 * 19 17 15 23 23 C 1.47956 * 90.76559 * 24.69091 * 10 9 8 24 24 C 1.53001 * 109.47334 * 239.99579 * 2 1 3 25 25 H 1.08999 * 109.98878 * 186.08646 * 24 2 1 26 26 C 1.54098 * 109.87723 * 65.00086 * 24 2 1 27 27 C 1.54813 * 104.30472 * 238.48010 * 26 24 2 28 28 C 1.55227 * 101.98357 * 339.26359 * 27 26 24 29 29 O 1.43744 * 109.87631 * 307.16950 * 24 2 1 30 30 H 1.08997 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47123 * 300.00479 * 1 2 3 32 32 H 1.08999 * 109.47008 * 60.00405 * 1 2 3 33 33 H 0.96994 * 120.00059 * 0.02562 * 6 4 2 34 34 H 1.08997 * 109.47553 * 300.00372 * 7 6 4 35 35 H 1.09007 * 109.47075 * 60.00934 * 7 6 4 36 36 H 1.09001 * 112.93809 * 43.43812 * 8 7 6 37 37 H 1.08998 * 113.75704 * 336.23981 * 9 8 7 38 38 H 1.09000 * 113.75709 * 107.60469 * 9 8 7 39 39 H 1.09001 * 109.47044 * 190.63941 * 11 10 9 40 40 H 1.09001 * 109.46888 * 310.64173 * 11 10 9 41 41 H 0.96991 * 120.00360 * 0.02562 * 14 12 11 42 42 H 0.96999 * 120.00114 * 180.02562 * 18 17 15 43 43 H 1.08996 * 113.76168 * 220.99393 * 23 10 9 44 44 H 1.08999 * 113.86582 * 89.63617 * 23 10 9 45 45 H 1.09002 * 110.48969 * 357.22346 * 26 24 2 46 46 H 1.09002 * 110.48612 * 119.74013 * 26 24 2 47 47 H 1.08999 * 110.90868 * 97.38351 * 27 26 24 48 48 H 1.09003 * 110.91016 * 220.99202 * 27 26 24 49 49 H 1.09002 * 110.51777 * 278.38206 * 28 27 26 50 50 H 1.09000 * 110.64403 * 155.43932 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7296 -1.6963 1.1193 6 7 1.7067 -0.2497 2.4546 7 6 2.1946 -0.9406 3.6508 8 6 1.6842 -0.2195 4.9000 9 6 2.6076 0.9141 5.3819 10 7 2.3472 0.4112 6.7488 11 6 3.5808 0.3917 7.5464 12 6 3.9958 1.8051 7.8643 13 8 3.3299 2.7370 7.4653 14 7 5.1070 2.0336 8.5919 15 6 5.4843 3.3194 8.8816 16 1 4.8908 4.1492 8.5270 17 6 6.6302 3.5551 9.6313 18 7 7.3525 2.5454 10.0623 19 14 7.1447 5.3071 10.0254 20 1 6.0673 5.9778 10.7964 21 1 8.3912 5.2873 10.8321 22 1 7.3842 6.0488 8.7614 23 6 2.0387 -0.9343 6.2164 24 6 2.0401 -0.7213 -1.2492 25 1 3.1246 -0.8213 -1.2050 26 6 1.6373 0.0669 -2.5105 27 6 0.7968 -0.9368 -3.3368 28 6 1.2541 -2.2994 -2.7506 29 8 1.4330 -2.0207 -1.3453 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.1488 0.5387 2.5435 34 1 1.8309 -1.9681 3.6508 35 1 3.2847 -0.9409 3.6510 36 1 0.6355 0.0683 4.8257 37 1 3.6437 0.8021 5.0627 38 1 2.2102 1.9123 5.1980 39 1 3.4050 -0.1528 8.4742 40 1 4.3716 -0.1007 6.9804 41 1 5.6398 1.2884 8.9107 42 1 8.1523 2.7099 10.5860 43 1 1.1869 -1.4130 6.6993 44 1 2.9073 -1.5885 6.1408 45 1 1.0375 0.9365 -2.2417 46 1 2.5226 0.3729 -3.0680 47 1 -0.2692 -0.7805 -3.1711 48 1 1.0387 -0.8664 -4.3973 49 1 2.1951 -2.6132 -3.2025 50 1 0.4852 -3.0581 -2.8966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665328543.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:35 Heat of formation + Delta-G solvation = -88.417598 kcal Electronic energy + Delta-G solvation = -29204.111465 eV Core-core repulsion = 25039.200699 eV Total energy + Delta-G solvation = -4164.910766 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -40.65580 -40.03207 -38.93800 -37.69795 -34.83614 -34.10378 -33.86486 -32.27877 -31.34196 -30.70114 -28.52846 -27.30801 -25.95786 -25.27837 -24.63124 -22.82456 -22.24577 -21.32476 -20.27784 -19.40702 -19.16680 -17.89988 -17.49015 -16.64835 -16.44335 -16.20826 -15.88906 -15.85500 -15.28816 -15.11682 -14.88048 -14.61606 -14.23739 -14.15156 -13.88887 -13.65296 -13.57471 -13.29491 -12.96518 -12.52042 -12.47985 -12.35199 -12.08536 -12.04378 -11.84455 -11.71289 -11.56715 -11.48319 -11.41118 -11.25921 -11.04680 -11.01096 -10.61285 -10.57520 -10.44153 -10.20883 -9.92366 -9.77279 -9.49357 -9.15891 -8.64387 -8.22241 -7.96196 -6.41389 -3.82348 2.56983 2.99536 3.19841 3.25564 3.29813 3.54533 3.89566 4.00692 4.09837 4.20902 4.27414 4.41866 4.52631 4.54383 4.61479 4.68413 4.70134 4.91894 4.95249 4.98661 5.14110 5.18398 5.23559 5.26369 5.31315 5.38155 5.39348 5.44784 5.47504 5.52811 5.60163 5.61777 5.64340 5.70998 5.75215 5.79327 5.85648 5.88575 6.06633 6.23851 6.27030 6.38064 6.63557 6.64743 7.21692 7.37891 7.54888 8.05574 8.14066 8.61597 9.17883 9.54369 10.06110 10.76293 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019669 B = 0.001764 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.225327 B =15870.212128 C =16514.493787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 H 0.107 0.893 4 C 0.517 3.483 5 O -0.529 6.529 6 N -0.728 5.728 7 C 0.129 3.871 8 C -0.134 4.134 9 C 0.026 3.974 10 N -0.454 5.454 11 C 0.010 3.990 12 C 0.444 3.556 13 O -0.580 6.580 14 N -0.564 5.564 15 C -0.300 4.300 16 H 0.102 0.898 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.931 3.069 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.274 1.274 23 C 0.008 3.992 24 C 0.097 3.903 25 H 0.075 0.925 26 C -0.155 4.155 27 C -0.155 4.155 28 C 0.043 3.957 29 O -0.356 6.356 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.401 0.599 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.054 0.946 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.059 0.941 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.193 -8.924 -23.885 28.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.133 4.133 3 H 0.125 0.875 4 C 0.303 3.697 5 O -0.405 6.405 6 N -0.381 5.381 7 C 0.005 3.995 8 C -0.153 4.153 9 C -0.102 4.102 10 N -0.176 5.176 11 C -0.122 4.122 12 C 0.229 3.771 13 O -0.464 6.464 14 N -0.201 5.201 15 C -0.429 4.429 16 H 0.120 0.880 17 C -0.180 4.180 18 N -0.543 5.543 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.121 4.121 24 C 0.039 3.961 25 H 0.093 0.907 26 C -0.192 4.192 27 C -0.192 4.192 28 C -0.034 4.034 29 O -0.274 6.274 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.235 0.765 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.122 0.878 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.077 0.923 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.442 -8.812 -23.466 28.443 hybrid contribution 1.261 0.522 0.032 1.365 sum -12.181 -8.289 -23.434 27.681 Atomic orbital electron populations 1.21710 0.92238 1.03520 1.02323 1.21558 0.98590 1.00326 0.92844 0.87496 1.20457 0.80199 0.84659 0.84407 1.90727 1.37343 1.25765 1.86638 1.46005 1.54192 1.32294 1.05594 1.21410 0.99257 0.96095 0.82715 1.23341 1.01354 0.97518 0.93061 1.23866 0.98092 0.99328 0.88940 1.68406 1.28794 1.09849 1.10522 1.22464 0.92241 0.97678 0.99826 1.19689 0.83487 0.89628 0.84301 1.90510 1.54759 1.44552 1.56613 1.41866 1.22470 1.08981 1.46772 1.19645 1.07920 0.84508 1.30856 0.88008 1.25265 0.96188 0.99562 0.96938 1.69606 1.16831 1.30936 1.36933 0.85913 0.77815 0.81883 0.78572 1.19895 1.20968 1.19939 1.23961 1.01505 0.93128 0.93555 1.22462 0.97607 0.83326 0.92754 0.90680 1.23063 1.00783 0.99334 0.96059 1.23170 1.00724 0.95216 1.00119 1.23586 1.00479 0.96980 0.82332 1.88997 1.81797 1.33561 1.23078 0.91137 0.92088 0.91560 0.76484 0.91276 0.91367 0.87773 0.91503 0.88845 0.89146 0.92806 0.77488 0.91820 0.89146 0.91125 0.90025 0.90444 0.90508 0.90309 0.92306 0.89133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.67 37.16 0.32 -0.60 16 2 C -0.11 -0.91 2.42 -91.77 -0.22 -1.13 16 3 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 4 C 0.52 5.96 7.06 -10.98 -0.08 5.89 16 5 O -0.53 -8.38 15.51 -5.75 -0.09 -8.47 16 6 N -0.73 -7.14 5.45 -60.29 -0.33 -7.47 16 7 C 0.13 1.40 5.53 -4.04 -0.02 1.38 16 8 C -0.13 -1.47 3.94 -89.68 -0.35 -1.82 16 9 C 0.03 0.40 6.31 -2.76 -0.02 0.38 16 10 N -0.45 -7.47 5.95 -239.71 -1.43 -8.90 16 11 C 0.01 0.18 5.31 -4.97 -0.03 0.15 16 12 C 0.44 10.61 7.59 -10.99 -0.08 10.52 16 13 O -0.58 -15.77 15.12 5.55 0.08 -15.69 16 14 N -0.56 -14.48 5.29 -10.96 -0.06 -14.53 16 15 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 16 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 17 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 19 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 C 0.01 0.10 7.54 -2.77 -0.02 0.08 16 24 C 0.10 0.86 2.62 -26.16 -0.07 0.79 16 25 H 0.08 0.78 7.93 -51.93 -0.41 0.36 16 26 C -0.15 -0.89 6.16 -25.20 -0.16 -1.05 16 27 C -0.15 -0.81 7.17 -24.60 -0.18 -0.98 16 28 C 0.04 0.31 7.72 38.34 0.30 0.61 16 29 O -0.36 -3.84 9.65 -46.54 -0.45 -4.29 16 30 H 0.07 0.59 7.53 -51.93 -0.39 0.20 16 31 H 0.06 0.33 7.56 -51.93 -0.39 -0.07 16 32 H 0.07 0.34 6.73 -51.93 -0.35 -0.01 16 33 H 0.40 3.00 7.89 -40.82 -0.32 2.67 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.84 7.84 -51.92 -0.41 0.43 16 36 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.07 1.04 7.53 -51.93 -0.39 0.65 16 38 H 0.09 1.53 8.09 -51.93 -0.42 1.11 16 39 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 40 H 0.05 0.88 7.69 -51.93 -0.40 0.48 16 41 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 42 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.07 0.79 7.75 -51.93 -0.40 0.38 16 45 H 0.08 0.38 6.60 -51.93 -0.34 0.04 16 46 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 402.04 15.07 6.06 6.06 Total: -1.00 -35.18 402.04 -9.64 -44.82 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -8.29 Total: 10.16 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -0.85 Total: 6.14 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -1.09 Total: -54.88 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.45 Total: -28.45 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.18 -9.64 -44.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665328543.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.598 kcal (2) G-P(sol) polarization free energy of solvation -35.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds