Wall clock time and date at job start Sat Apr 11 2020 05:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.46840 * 2 1 4 4 C 1.50704 * 109.46863 * 239.99947 * 2 1 3 5 5 O 1.21282 * 120.00053 * 239.99686 * 4 2 1 6 6 N 1.34774 * 119.99974 * 60.00372 * 4 2 1 7 7 C 1.46503 * 120.00049 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.47223 * 179.97438 * 7 6 4 9 9 H 1.09001 * 109.50346 * 59.91017 * 8 7 6 10 10 C 1.53095 * 109.50645 * 179.97438 * 8 7 6 11 11 N 1.47015 * 109.25840 * 176.78206 * 10 8 7 12 12 C 1.46900 * 110.99846 * 177.60817 * 11 10 8 13 13 C 1.50703 * 109.47118 * 293.64051 * 12 11 10 14 14 O 1.21293 * 119.99929 * 353.72011 * 13 12 11 15 15 N 1.34773 * 119.99662 * 173.72681 * 13 12 11 16 16 C 1.37101 * 119.99941 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99868 * 359.97438 * 16 15 13 18 18 C 1.38949 * 119.99906 * 179.97438 * 16 15 13 19 19 N 1.31410 * 120.00553 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99720 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47294 * 0.02562 * 20 18 16 22 22 H 1.48511 * 109.46883 * 119.99881 * 20 18 16 23 23 H 1.48499 * 109.47236 * 239.99972 * 20 18 16 24 24 C 1.47013 * 110.75371 * 301.38954 * 11 10 8 25 25 C 1.53092 * 109.26076 * 58.61080 * 24 11 10 26 26 O 1.43013 * 109.50516 * 299.78468 * 8 7 6 27 27 C 1.53000 * 109.46786 * 120.00272 * 2 1 3 28 28 C 1.53006 * 117.49616 * 248.61662 * 27 2 1 29 29 C 1.52999 * 60.00339 * 252.51631 * 28 27 2 30 30 H 1.08999 * 109.47154 * 59.99788 * 1 2 3 31 31 H 1.09007 * 109.47273 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47384 * 299.99728 * 1 2 3 33 33 H 0.97006 * 120.00266 * 359.97438 * 6 4 2 34 34 H 1.08998 * 109.47096 * 59.99822 * 7 6 4 35 35 H 1.09000 * 109.46774 * 299.99825 * 7 6 4 36 36 H 1.09009 * 109.50589 * 56.85173 * 10 8 7 37 37 H 1.08997 * 109.54412 * 296.74529 * 10 8 7 38 38 H 1.09004 * 109.46893 * 173.63795 * 12 11 10 39 39 H 1.08997 * 109.47028 * 53.64058 * 12 11 10 40 40 H 0.97006 * 120.00636 * 359.97438 * 15 13 12 41 41 H 0.96992 * 120.00394 * 179.97438 * 19 18 16 42 42 H 1.08996 * 109.50463 * 178.54990 * 24 11 10 43 43 H 1.09007 * 109.50331 * 298.67657 * 24 11 10 44 44 H 1.08996 * 109.50801 * 183.21542 * 25 24 11 45 45 H 1.09003 * 109.54185 * 63.10754 * 25 24 11 46 46 H 1.08989 * 115.55486 * 34.33188 * 27 2 1 47 47 H 1.09005 * 117.49680 * 0.02562 * 28 27 2 48 48 H 1.08995 * 117.49860 * 145.02057 * 28 27 2 49 49 H 1.09001 * 117.49986 * 252.51721 * 29 28 27 50 50 H 1.08994 * 117.50187 * 107.48550 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7067 -0.2500 -2.4546 7 6 2.1954 -0.9403 -3.6508 8 6 1.6848 -0.2194 -4.9000 9 1 2.0459 0.8091 -4.8998 10 6 2.1957 -0.9398 -6.1506 11 7 1.6395 -0.2894 -7.3460 12 6 2.1509 -0.9161 -8.5723 13 6 3.6313 -0.6588 -8.6882 14 8 4.1827 0.0769 -7.8971 15 7 4.3423 -1.2461 -9.6710 16 6 5.6892 -1.0125 -9.7762 17 1 6.1802 -0.3575 -9.0718 18 6 6.4223 -1.6184 -10.7891 19 7 5.8250 -2.4158 -11.6460 20 14 8.2573 -1.2995 -10.9329 21 1 8.6847 -0.3725 -9.8543 22 1 8.9943 -2.5823 -10.8032 23 1 8.5519 -0.6908 -12.2549 24 6 0.1699 -0.3128 -7.3157 25 6 -0.3206 0.4013 -6.0534 26 8 0.2547 -0.2244 -4.9032 27 6 2.0399 -0.7213 1.2492 28 6 2.7419 0.1226 2.3151 29 6 3.5550 -0.8281 1.4343 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.1487 0.5386 -2.5436 34 1 1.8325 -1.9680 -3.6510 35 1 3.2854 -0.9398 -3.6506 36 1 1.8805 -1.9830 -6.1240 37 1 3.2840 -0.8891 -6.1816 38 1 1.6397 -0.4929 -9.4370 39 1 1.9708 -1.9904 -8.5336 40 1 3.9014 -1.8347 -10.3035 41 1 6.3367 -2.8384 -12.3533 42 1 -0.2204 0.1964 -8.1969 43 1 -0.1776 -1.3459 -7.3077 44 1 -1.4072 0.3367 -5.9977 45 1 -0.0194 1.4484 -6.0865 46 1 1.4310 -1.5585 1.5902 47 1 2.8400 1.1917 2.1265 48 1 2.5947 -0.1593 3.3577 49 1 3.9427 -1.7356 1.8973 50 1 4.1883 -0.3846 0.6660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666692781.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:40 Heat of formation + Delta-G solvation = -114.777664 kcal Electronic energy + Delta-G solvation = -29701.516897 eV Core-core repulsion = 25535.463073 eV Total energy + Delta-G solvation = -4166.053824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.31047 -40.79286 -39.76213 -38.06474 -36.76426 -35.95802 -35.67178 -33.67356 -33.29001 -32.17636 -30.41487 -28.10029 -26.89237 -25.54606 -25.24507 -23.64801 -23.17577 -22.34529 -21.61291 -21.02810 -20.64551 -19.89986 -18.21119 -17.93702 -17.59124 -17.31642 -17.04460 -16.61300 -16.47468 -16.27427 -15.95159 -15.79366 -15.65984 -15.33113 -15.26900 -15.11070 -14.69493 -14.49224 -13.98433 -13.92054 -13.51090 -13.42779 -13.24145 -13.17833 -13.03551 -12.86259 -12.69377 -12.42517 -12.39324 -12.36927 -12.23677 -12.13193 -11.96554 -11.62449 -11.45775 -11.35893 -10.96747 -10.83216 -10.57999 -10.26261 -10.13100 -10.01555 -9.34644 -8.48266 -5.96645 1.34843 1.40378 1.54246 1.66373 2.03051 2.03731 2.26570 2.59503 2.68970 3.00411 3.18509 3.30710 3.60424 3.76149 3.84391 3.86632 3.94793 3.98229 4.02316 4.19058 4.20670 4.27933 4.31487 4.34693 4.38395 4.45184 4.48814 4.57346 4.58081 4.63295 4.73304 4.82328 4.85359 4.89449 4.92287 5.01072 5.03171 5.08008 5.22228 5.27126 5.33995 5.39758 5.40160 5.74839 5.94921 6.04978 6.13777 6.55992 6.58642 7.11595 7.26855 7.54811 8.10180 8.69336 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012950 B = 0.002255 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.640365 B =12412.761583 C =14217.639477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.073 4.073 3 H 0.116 0.884 4 C 0.509 3.491 5 O -0.579 6.579 6 N -0.712 5.712 7 C 0.137 3.863 8 C 0.104 3.896 9 H 0.073 0.927 10 C 0.030 3.970 11 N -0.529 5.529 12 C 0.058 3.942 13 C 0.440 3.560 14 O -0.613 6.613 15 N -0.574 5.574 16 C -0.329 4.329 17 H 0.079 0.921 18 C -0.014 4.014 19 N -0.920 5.920 20 Si 0.991 3.009 21 H -0.274 1.274 22 H -0.272 1.272 23 H -0.270 1.270 24 C 0.013 3.987 25 C 0.066 3.934 26 O -0.384 6.384 27 C -0.144 4.144 28 C -0.157 4.157 29 C -0.181 4.181 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.415 0.585 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.037 0.963 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.064 0.936 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.106 0.894 43 H 0.046 0.954 44 H 0.132 0.868 45 H 0.063 0.937 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.108 0.892 49 H 0.087 0.913 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.046 6.039 19.594 26.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.094 4.094 3 H 0.134 0.866 4 C 0.296 3.704 5 O -0.458 6.458 6 N -0.364 5.364 7 C 0.012 3.988 8 C 0.046 3.954 9 H 0.091 0.909 10 C -0.099 4.099 11 N -0.254 5.254 12 C -0.073 4.073 13 C 0.228 3.772 14 O -0.499 6.499 15 N -0.212 5.212 16 C -0.459 4.459 17 H 0.097 0.903 18 C -0.214 4.214 19 N -0.562 5.562 20 Si 0.815 3.185 21 H -0.198 1.198 22 H -0.198 1.198 23 H -0.195 1.195 24 C -0.114 4.114 25 C -0.010 4.010 26 O -0.303 6.303 27 C -0.163 4.163 28 C -0.194 4.194 29 C -0.219 4.219 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.252 0.748 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.135 0.865 39 H 0.082 0.918 40 H 0.229 0.771 41 H 0.087 0.913 42 H 0.124 0.876 43 H 0.064 0.936 44 H 0.149 0.851 45 H 0.081 0.919 46 H 0.121 0.879 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.105 0.895 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.085 6.133 20.162 26.511 hybrid contribution 0.823 -1.039 -1.307 1.861 sum -15.262 5.094 18.855 24.787 Atomic orbital electron populations 1.21743 0.90597 1.02708 1.04253 1.20939 0.98926 1.00108 0.89438 0.86630 1.21341 0.79305 0.84321 0.85397 1.90697 1.39516 1.28238 1.87326 1.45786 1.53590 1.32449 1.04602 1.21107 0.98516 0.96334 0.82859 1.22038 0.81850 0.99209 0.92320 0.90935 1.22625 1.01068 0.95729 0.90482 1.61746 1.07760 1.55245 1.00667 1.21767 0.92042 0.98769 0.94733 1.20743 0.89895 0.83670 0.82938 1.90475 1.72987 1.41616 1.44833 1.41954 1.08361 1.42985 1.27895 1.19669 0.84670 1.27909 1.13661 0.90324 1.26029 1.04606 0.95745 0.94997 1.69670 1.38507 1.30799 1.17182 0.84892 0.77041 0.78239 0.78299 1.19825 1.19754 1.19501 1.23001 0.85984 1.00970 1.01461 1.22860 0.99443 0.96094 0.82619 1.87941 1.18263 1.80468 1.43601 1.22029 0.95353 1.02195 0.96707 1.23170 1.02123 0.97733 0.96370 1.22745 0.94147 1.01999 1.02970 0.90760 0.93054 0.89300 0.74754 0.91862 0.91306 0.94471 0.91078 0.86502 0.91818 0.77058 0.91331 0.87613 0.93605 0.85068 0.91917 0.87854 0.87488 0.87351 0.89492 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.07 71.98 0.65 -0.80 16 2 C -0.07 -1.12 2.88 -11.54 -0.03 -1.16 16 3 H 0.12 1.34 7.90 -2.39 -0.02 1.33 16 4 C 0.51 12.02 7.03 87.66 0.62 12.63 16 5 O -0.58 -18.98 15.08 -3.04 -0.05 -19.02 16 6 N -0.71 -15.07 5.34 -463.05 -2.47 -17.54 16 7 C 0.14 3.58 5.37 86.38 0.46 4.04 16 8 C 0.10 2.71 2.89 30.63 0.09 2.79 16 9 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 10 C 0.03 0.96 4.58 86.31 0.40 1.36 16 11 N -0.53 -16.45 4.42 -899.78 -3.98 -20.43 16 12 C 0.06 1.97 5.45 85.56 0.47 2.43 16 13 C 0.44 20.75 7.35 87.66 0.64 21.40 16 14 O -0.61 -33.38 14.25 -3.07 -0.04 -33.43 16 15 N -0.57 -29.40 5.29 -306.98 -1.62 -31.03 16 16 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 17 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 18 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 19 N -0.92 -49.81 13.05 21.66 0.28 -49.53 16 20 Si 0.99 43.27 29.55 68.60 2.03 45.30 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 24 C 0.01 0.28 5.65 86.31 0.49 0.77 16 25 C 0.07 1.18 7.01 72.01 0.50 1.69 16 26 O -0.38 -8.50 10.23 -148.98 -1.52 -10.03 16 27 C -0.14 -2.46 4.73 -10.79 -0.05 -2.51 16 28 C -0.16 -2.06 10.18 30.60 0.31 -1.75 16 29 C -0.18 -3.62 8.97 30.60 0.27 -3.34 16 30 H 0.07 0.64 7.56 -2.39 -0.02 0.62 16 31 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.42 6.53 7.77 -92.70 -0.72 5.81 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.07 2.87 6.10 -2.39 -0.01 2.85 16 38 H 0.12 3.39 8.04 -2.39 -0.02 3.37 16 39 H 0.06 1.99 8.12 -2.39 -0.02 1.97 16 40 H 0.40 19.26 7.90 -92.70 -0.73 18.53 16 41 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 42 H 0.11 1.86 8.09 -2.39 -0.02 1.85 16 43 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 44 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.10 1.79 8.11 -2.39 -0.02 1.77 16 47 H 0.11 1.11 8.05 -2.38 -0.02 1.09 16 48 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.07 1.74 8.10 -2.39 -0.02 1.72 16 Total: -1.00 -73.77 405.63 -1.78 -75.55 By element: Atomic # 1 Polarization: 41.30 SS G_CDS: -0.50 Total: 40.79 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 6.10 Total: 19.36 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -7.79 Total: -118.53 kcal Atomic # 8 Polarization: -60.86 SS G_CDS: -1.61 Total: -62.47 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -73.77 -1.78 -75.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666692781.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.229 kcal (2) G-P(sol) polarization free energy of solvation -73.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds