Wall clock time and date at job start Sat Apr 11 2020 05:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47139 * 2 1 4 4 C 1.50692 * 109.47649 * 119.99954 * 2 1 3 5 5 O 1.21282 * 120.00546 * 119.99673 * 4 2 1 6 6 N 1.34776 * 120.00348 * 300.00459 * 4 2 1 7 7 C 1.46502 * 120.00692 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47179 * 180.02562 * 7 6 4 9 9 H 1.09005 * 109.50557 * 304.91000 * 8 7 6 10 10 C 1.53094 * 109.50387 * 184.78569 * 8 7 6 11 11 N 1.47019 * 109.25864 * 183.21518 * 10 8 7 12 12 C 1.46900 * 111.00219 * 182.38962 * 11 10 8 13 13 C 1.50696 * 109.46946 * 170.00315 * 12 11 10 14 14 O 1.21283 * 120.00274 * 353.80433 * 13 12 11 15 15 N 1.34783 * 119.99693 * 173.80233 * 13 12 11 16 16 C 1.37101 * 119.99725 * 179.97438 * 15 13 12 17 17 H 1.07997 * 119.99857 * 0.02562 * 16 15 13 18 18 C 1.38950 * 119.99777 * 180.02562 * 16 15 13 19 19 N 1.31417 * 119.99965 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99982 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46948 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47042 * 119.99952 * 20 18 16 23 23 H 1.48500 * 109.46836 * 239.99829 * 20 18 16 24 24 C 1.47010 * 110.75027 * 58.61276 * 11 10 8 25 25 C 1.53103 * 109.25922 * 301.38309 * 24 11 10 26 26 O 1.43012 * 109.25641 * 56.85353 * 25 24 11 27 27 C 1.53001 * 109.47433 * 240.00484 * 2 1 3 28 28 C 1.52997 * 117.50651 * 128.61884 * 27 2 1 29 29 C 1.52996 * 117.50036 * 59.99138 * 27 2 1 30 30 H 1.08997 * 109.47510 * 60.00569 * 1 2 3 31 31 H 1.09004 * 109.47139 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47418 * 299.99526 * 1 2 3 33 33 H 0.97005 * 119.99979 * 359.97438 * 6 4 2 34 34 H 1.09000 * 109.46814 * 60.00151 * 7 6 4 35 35 H 1.08995 * 109.46567 * 299.99699 * 7 6 4 36 36 H 1.09000 * 109.51092 * 63.27914 * 10 8 7 37 37 H 1.09004 * 109.50627 * 303.14887 * 10 8 7 38 38 H 1.09000 * 109.47114 * 290.00262 * 12 11 10 39 39 H 1.09000 * 109.47032 * 50.00339 * 12 11 10 40 40 H 0.97003 * 120.00067 * 0.02562 * 15 13 12 41 41 H 0.97001 * 120.00141 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.50877 * 61.32270 * 24 11 10 43 43 H 1.09002 * 109.50763 * 181.41017 * 24 11 10 44 44 H 1.09003 * 109.50236 * 176.78514 * 25 24 11 45 45 H 1.08995 * 109.50582 * 296.91549 * 25 24 11 46 46 H 1.09010 * 115.54724 * 274.33093 * 27 2 1 47 47 H 1.09007 * 117.49156 * 359.97438 * 28 27 2 48 48 H 1.08992 * 117.50191 * 145.02018 * 28 27 2 49 49 H 1.09000 * 117.50265 * 214.98650 * 29 27 2 50 50 H 1.08993 * 117.50110 * 0.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 8 2.7296 -1.6964 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1948 -0.9408 3.6507 8 6 1.6843 -0.2199 4.8999 9 1 1.9737 0.8302 4.8580 10 6 2.2897 -0.8684 6.1476 11 7 1.7366 -0.2224 7.3468 12 6 2.3353 -0.7781 8.5678 13 6 1.9352 0.0642 9.7516 14 8 1.3164 1.0935 9.5822 15 7 2.2650 -0.3264 10.9987 16 6 1.9015 0.4402 12.0757 17 1 1.3505 1.3567 11.9248 18 6 2.2419 0.0378 13.3614 19 7 2.9128 -1.0772 13.5449 20 14 1.7461 1.0818 14.8289 21 1 1.0045 2.2786 14.3569 22 1 0.8775 0.2851 15.7322 23 1 2.9625 1.5118 15.5640 24 6 0.2719 -0.3444 7.3756 25 6 -0.3133 0.2989 6.1155 26 8 0.2589 -0.3204 4.9604 27 6 2.0400 -0.7211 -1.2493 28 6 3.0741 0.0052 -2.1118 29 6 1.6356 -0.1495 -2.6096 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.1493 0.5389 2.5436 34 1 3.2848 -0.9411 3.6508 35 1 1.8310 -1.9683 3.6505 36 1 3.3725 -0.7438 6.1337 37 1 2.0451 -1.9306 6.1608 38 1 1.9830 -1.7993 8.7128 39 1 3.4211 -0.7784 8.4724 40 1 2.7602 -1.1494 11.1342 41 1 3.1502 -1.3584 14.4424 42 1 -0.0050 -1.3982 7.4084 43 1 -0.1184 0.1621 8.2583 44 1 -1.3945 0.1605 6.1048 45 1 -0.0820 1.3640 6.1097 46 1 2.1267 -1.8045 -1.1643 47 1 3.3907 0.9972 -1.7893 48 1 3.8415 -0.6000 -2.5942 49 1 1.4567 -0.8565 -3.4197 50 1 1.0066 0.7406 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666692782.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:46 Heat of formation + Delta-G solvation = -91.792112 kcal Electronic energy + Delta-G solvation = -29250.483370 eV Core-core repulsion = 25085.426274 eV Total energy + Delta-G solvation = -4165.057096 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.39780 -39.67399 -38.14462 -37.57314 -35.49612 -34.91991 -33.86043 -32.84461 -31.30846 -31.24799 -29.07498 -27.03150 -25.49297 -24.91251 -23.83280 -22.71121 -22.59155 -21.47915 -20.53187 -19.78511 -19.23088 -17.94381 -17.70055 -16.77626 -16.46549 -16.11564 -15.90628 -15.50632 -15.33230 -15.10996 -14.75920 -14.62019 -14.49877 -14.10689 -13.95951 -13.61462 -13.54653 -13.42816 -13.29724 -12.89786 -12.58436 -12.36948 -12.25161 -12.04064 -11.80759 -11.74746 -11.55059 -11.32316 -11.28016 -11.22621 -10.96449 -10.71564 -10.55874 -10.37697 -10.37416 -10.26376 -9.96756 -9.69886 -9.52391 -9.29090 -8.51246 -8.05021 -7.96909 -6.45491 -3.86563 2.43746 2.84471 3.13470 3.24451 3.31205 3.47201 3.57708 3.81986 3.85911 4.18430 4.20964 4.34438 4.52526 4.68824 4.69844 4.80972 4.86983 4.93032 5.00505 5.01541 5.07630 5.14509 5.20522 5.25965 5.32437 5.33772 5.37211 5.45994 5.51642 5.53012 5.57985 5.59760 5.74601 5.75437 5.76257 5.81522 5.84048 5.95698 6.06421 6.16106 6.21207 6.23476 7.03503 7.08824 7.22084 7.27693 7.51671 8.00899 8.02219 8.57228 9.14077 9.50039 10.01271 10.72184 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.037955 B = 0.001670 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.535207 B =16765.059494 C =17115.226761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 H 0.096 0.904 4 C 0.519 3.481 5 O -0.540 6.540 6 N -0.723 5.723 7 C 0.130 3.870 8 C 0.085 3.915 9 H 0.075 0.925 10 C 0.026 3.974 11 N -0.512 5.512 12 C 0.046 3.954 13 C 0.443 3.557 14 O -0.578 6.578 15 N -0.563 5.563 16 C -0.300 4.300 17 H 0.104 0.896 18 C 0.023 3.977 19 N -0.901 5.901 20 Si 0.930 3.070 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.016 3.984 25 C 0.069 3.931 26 O -0.384 6.384 27 C -0.135 4.135 28 C -0.178 4.178 29 C -0.178 4.178 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.404 0.596 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.044 0.956 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.034 0.966 43 H 0.109 0.891 44 H 0.097 0.903 45 H 0.062 0.938 46 H 0.116 0.884 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.042 0.416 -26.600 26.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 H 0.114 0.886 4 C 0.305 3.695 5 O -0.417 6.417 6 N -0.374 5.374 7 C 0.005 3.995 8 C 0.026 3.974 9 H 0.093 0.907 10 C -0.103 4.103 11 N -0.237 5.237 12 C -0.085 4.085 13 C 0.228 3.772 14 O -0.462 6.462 15 N -0.200 5.200 16 C -0.429 4.429 17 H 0.122 0.878 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.112 4.112 25 C -0.008 4.008 26 O -0.304 6.304 27 C -0.153 4.153 28 C -0.215 4.215 29 C -0.215 4.215 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.239 0.761 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.052 0.948 43 H 0.127 0.873 44 H 0.115 0.885 45 H 0.080 0.920 46 H 0.134 0.866 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.113 0.887 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.881 0.713 -26.746 26.910 hybrid contribution -0.084 -0.478 1.376 1.459 sum -2.965 0.235 -25.370 25.544 Atomic orbital electron populations 1.21755 0.92378 1.03106 1.02710 1.20852 0.97546 0.99930 0.91772 0.88551 1.20518 0.79946 0.84555 0.84438 1.90695 1.37864 1.26332 1.86766 1.45885 1.53869 1.32351 1.05339 1.21341 0.99134 0.96887 0.82100 1.22307 0.82055 0.99776 0.93257 0.90737 1.22674 1.00449 0.96808 0.90407 1.61778 1.05273 1.56011 1.00606 1.21883 1.00303 0.96369 0.89950 1.19688 0.85722 0.88079 0.83705 1.90493 1.44476 1.26195 1.85079 1.41888 1.49992 1.23610 1.04497 1.19749 1.33416 1.05829 0.83917 0.87825 1.25271 0.96862 0.96757 0.99030 1.69621 1.39093 1.22137 1.23346 0.85797 0.78269 0.79666 0.80591 1.19216 1.20759 1.20731 1.22903 0.87996 0.99498 1.00771 1.22676 0.97507 0.96997 0.83611 1.87944 1.19121 1.79044 1.44243 1.22046 1.03484 1.00148 0.89666 1.23015 0.92592 1.01866 1.04018 1.22975 0.98185 1.03251 0.97131 0.91323 0.91836 0.91826 0.76125 0.89804 0.90596 0.89456 0.93826 0.93335 0.89081 0.77481 0.91884 0.94802 0.87264 0.88503 0.91957 0.86609 0.88870 0.88737 0.88702 0.88726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.93 37.15 0.33 -0.51 16 2 C -0.08 -0.58 2.88 -91.78 -0.26 -0.85 16 3 H 0.10 0.57 7.90 -51.93 -0.41 0.16 16 4 C 0.52 5.37 7.15 -10.99 -0.08 5.30 16 5 O -0.54 -7.67 15.65 5.56 0.09 -7.58 16 6 N -0.72 -6.57 5.40 -60.30 -0.33 -6.90 16 7 C 0.13 1.31 5.35 -4.04 -0.02 1.29 16 8 C 0.08 0.93 2.84 -26.68 -0.08 0.86 16 9 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 10 C 0.03 0.32 4.93 -3.71 -0.02 0.30 16 11 N -0.51 -8.21 4.42 -235.75 -1.04 -9.25 16 12 C 0.05 0.80 5.45 -4.98 -0.03 0.78 16 13 C 0.44 10.16 7.35 -10.98 -0.08 10.08 16 14 O -0.58 -15.08 14.25 5.55 0.08 -15.00 16 15 N -0.56 -13.99 5.29 -10.96 -0.06 -14.05 16 16 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 17 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16 20 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 C 0.02 0.25 5.30 -3.71 -0.02 0.23 16 25 C 0.07 0.87 7.01 37.21 0.26 1.13 16 26 O -0.38 -4.69 10.42 -35.23 -0.37 -5.06 16 27 C -0.13 -1.07 4.76 -90.62 -0.43 -1.50 16 28 C -0.18 -1.23 10.18 -26.73 -0.27 -1.50 16 29 C -0.18 -1.06 9.73 -26.73 -0.26 -1.32 16 30 H 0.07 0.32 7.29 -51.93 -0.38 -0.06 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.33 7.56 -51.93 -0.39 -0.06 16 33 H 0.40 2.95 7.89 -40.82 -0.32 2.63 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 39 H 0.09 1.43 8.04 -51.93 -0.42 1.01 16 40 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 41 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.11 2.04 6.10 -51.93 -0.32 1.72 16 44 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.12 1.14 7.47 -51.92 -0.39 0.75 16 47 H 0.09 0.58 8.05 -51.93 -0.42 0.16 16 48 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.09 0.47 7.61 -51.93 -0.40 0.07 16 LS Contribution 405.27 15.07 6.11 6.11 Total: -1.00 -32.64 405.27 -9.36 -42.00 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -8.34 Total: 11.08 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -1.20 Total: 6.44 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.70 Total: -53.71 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.20 Total: -27.64 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.64 -9.36 -42.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666692782.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.796 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds