Wall clock time and date at job start Sat Apr 11 2020 05:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47217 * 2 1 4 4 C 1.50692 * 109.46919 * 239.99455 * 2 1 3 5 5 O 1.21282 * 120.00546 * 239.99712 * 4 2 1 6 6 N 1.34774 * 120.00013 * 60.00205 * 4 2 1 7 7 C 1.46510 * 120.00256 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47078 * 180.02562 * 7 6 4 9 9 H 1.09005 * 109.50557 * 304.91247 * 8 7 6 10 10 C 1.53094 * 109.50387 * 184.78816 * 8 7 6 11 11 N 1.47019 * 109.25864 * 183.21518 * 10 8 7 12 12 C 1.46900 * 111.00219 * 182.38962 * 11 10 8 13 13 C 1.50696 * 109.46946 * 170.00315 * 12 11 10 14 14 O 1.21283 * 120.00274 * 353.80433 * 13 12 11 15 15 N 1.34783 * 119.99693 * 173.80233 * 13 12 11 16 16 C 1.37101 * 119.99725 * 179.97438 * 15 13 12 17 17 H 1.07997 * 119.99857 * 0.02562 * 16 15 13 18 18 C 1.38950 * 119.99777 * 180.02562 * 16 15 13 19 19 N 1.31417 * 119.99965 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99982 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46948 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47042 * 119.99952 * 20 18 16 23 23 H 1.48500 * 109.46836 * 239.99829 * 20 18 16 24 24 C 1.47010 * 110.75027 * 58.61276 * 11 10 8 25 25 C 1.53103 * 109.25922 * 301.38309 * 24 11 10 26 26 O 1.43012 * 109.25641 * 56.85353 * 25 24 11 27 27 C 1.53001 * 109.46604 * 119.99881 * 2 1 3 28 28 C 1.53001 * 117.49777 * 248.61682 * 27 2 1 29 29 C 1.52995 * 60.00268 * 252.51420 * 28 27 2 30 30 H 1.08999 * 109.46968 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46902 * 300.00114 * 1 2 3 32 32 H 1.08995 * 109.46619 * 60.00129 * 1 2 3 33 33 H 0.96999 * 120.00626 * 0.02562 * 6 4 2 34 34 H 1.09000 * 109.46663 * 60.00651 * 7 6 4 35 35 H 1.08995 * 109.46819 * 300.00137 * 7 6 4 36 36 H 1.09000 * 109.51092 * 63.27914 * 10 8 7 37 37 H 1.09004 * 109.50627 * 303.14887 * 10 8 7 38 38 H 1.09000 * 109.47114 * 290.00262 * 12 11 10 39 39 H 1.09000 * 109.47032 * 50.00339 * 12 11 10 40 40 H 0.97003 * 120.00067 * 0.02562 * 15 13 12 41 41 H 0.97001 * 120.00141 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.50877 * 61.32270 * 24 11 10 43 43 H 1.09002 * 109.50763 * 181.41017 * 24 11 10 44 44 H 1.09003 * 109.50236 * 176.78514 * 25 24 11 45 45 H 1.08995 * 109.50582 * 296.91549 * 25 24 11 46 46 H 1.08998 * 115.55590 * 34.32800 * 27 2 1 47 47 H 1.09007 * 117.49991 * 0.02562 * 28 27 2 48 48 H 1.09001 * 117.50033 * 145.02612 * 28 27 2 49 49 H 1.08997 * 117.50203 * 252.50817 * 29 28 27 50 50 H 1.09005 * 117.51661 * 107.47921 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 8 2.7296 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.1955 -0.9405 -3.6507 8 6 1.6859 -0.2190 -4.8999 9 1 0.5994 -0.1419 -4.8579 10 6 2.0955 -1.0060 -6.1476 11 7 1.6706 -0.2693 -7.3468 12 6 1.9950 -1.0190 -8.5678 13 6 1.3342 -0.3611 -9.7516 14 8 0.5700 0.5653 -9.5822 15 7 1.5925 -0.8023 -10.9987 16 6 0.9909 -0.2042 -12.0757 17 1 0.3104 0.6208 -11.9248 18 6 1.2567 -0.6593 -13.3614 19 7 2.0844 -1.6635 -13.5449 20 14 0.4376 0.1561 -14.8289 21 1 -0.4436 1.2542 -14.3569 22 1 1.4783 0.7094 -15.7323 23 1 -0.3733 -0.8476 -15.5639 24 6 2.2740 1.0710 -7.3756 25 6 1.8625 1.8372 -6.1156 26 8 2.2557 1.0913 -4.9605 27 6 2.0399 -0.7213 1.2493 28 6 2.7419 0.1226 2.3152 29 6 3.5550 -0.8281 1.4344 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.1494 0.5388 -2.5436 34 1 1.8324 -1.9683 -3.6508 35 1 3.2854 -0.9401 -3.6505 36 1 1.6171 -1.9853 -6.1336 37 1 3.1784 -1.1295 -6.1608 38 1 3.0753 -1.0273 -8.7128 39 1 1.6334 -2.0428 -8.4723 40 1 2.2034 -1.5435 -11.1342 41 1 2.2703 -1.9810 -14.4424 42 1 3.3597 0.9808 -7.4086 43 1 1.9264 1.6077 -8.2584 44 1 2.3534 2.8104 -6.1049 45 1 0.7812 1.9742 -6.1098 46 1 1.4310 -1.5585 1.5904 47 1 2.8401 1.1918 2.1265 48 1 2.5947 -0.1592 3.3578 49 1 3.9427 -1.7355 1.8975 50 1 4.1884 -0.3849 0.6659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666692783.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:52 Heat of formation + Delta-G solvation = -90.359686 kcal Electronic energy + Delta-G solvation = -29338.769262 eV Core-core repulsion = 25173.774281 eV Total energy + Delta-G solvation = -4164.994981 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.40759 -39.68043 -38.13851 -37.36433 -35.47456 -34.89333 -33.86047 -32.98774 -31.32359 -31.26588 -29.07644 -27.03151 -25.32792 -24.76028 -23.83232 -22.75310 -22.55387 -21.57589 -20.59850 -19.84614 -19.22689 -17.91764 -17.42780 -16.72838 -16.44590 -16.11355 -15.86466 -15.75881 -15.13319 -15.11445 -14.83673 -14.72295 -14.44625 -14.13991 -14.00923 -13.62747 -13.49709 -13.32690 -13.15190 -12.90335 -12.57405 -12.36292 -12.10854 -12.01802 -11.79870 -11.74966 -11.55015 -11.41320 -11.27786 -11.22598 -10.96373 -10.71416 -10.55540 -10.37416 -10.37127 -10.26368 -9.86312 -9.67740 -9.52342 -9.26344 -8.51211 -8.05008 -7.96901 -6.45489 -3.86558 2.47079 2.83544 3.13471 3.24445 3.31202 3.54996 3.63467 3.83574 3.86020 4.18422 4.18568 4.42753 4.52987 4.69754 4.75120 4.80792 4.89042 4.90364 4.95705 5.01169 5.12381 5.14574 5.20524 5.32107 5.33617 5.36056 5.37466 5.48320 5.52788 5.55742 5.59721 5.65930 5.69957 5.74613 5.81308 5.84036 5.84527 5.94854 6.06500 6.16585 6.21841 6.23661 7.03676 7.08877 7.22331 7.30061 7.51673 8.02202 8.04401 8.57229 9.14076 9.50038 10.01272 10.72186 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.036975 B = 0.001696 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.087050 B =16509.676628 C =16755.918562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 H 0.097 0.903 4 C 0.515 3.485 5 O -0.534 6.534 6 N -0.724 5.724 7 C 0.130 3.870 8 C 0.085 3.915 9 H 0.075 0.925 10 C 0.026 3.974 11 N -0.512 5.512 12 C 0.046 3.954 13 C 0.443 3.557 14 O -0.578 6.578 15 N -0.563 5.563 16 C -0.299 4.299 17 H 0.104 0.896 18 C 0.022 3.978 19 N -0.901 5.901 20 Si 0.930 3.070 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.016 3.984 25 C 0.069 3.931 26 O -0.385 6.385 27 C -0.136 4.136 28 C -0.184 4.184 29 C -0.156 4.156 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.403 0.597 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.034 0.966 43 H 0.109 0.891 44 H 0.097 0.903 45 H 0.062 0.938 46 H 0.107 0.893 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.093 0.907 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.797 2.649 26.433 26.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 H 0.115 0.885 4 C 0.301 3.699 5 O -0.410 6.410 6 N -0.376 5.376 7 C 0.006 3.994 8 C 0.026 3.974 9 H 0.093 0.907 10 C -0.103 4.103 11 N -0.237 5.237 12 C -0.085 4.085 13 C 0.228 3.772 14 O -0.462 6.462 15 N -0.200 5.200 16 C -0.429 4.429 17 H 0.122 0.878 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.112 4.112 25 C -0.008 4.008 26 O -0.304 6.304 27 C -0.154 4.154 28 C -0.221 4.221 29 C -0.193 4.193 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.238 0.762 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.052 0.948 43 H 0.127 0.873 44 H 0.115 0.885 45 H 0.080 0.920 46 H 0.125 0.875 47 H 0.111 0.889 48 H 0.112 0.888 49 H 0.112 0.888 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.464 2.591 26.582 26.712 hybrid contribution 0.524 -0.034 -1.395 1.491 sum 0.988 2.556 25.186 25.335 Atomic orbital electron populations 1.21753 0.92418 1.02921 1.02811 1.20897 0.97595 0.99969 0.91725 0.88510 1.20611 0.80127 0.84739 0.84386 1.90706 1.37446 1.26137 1.86728 1.45911 1.54038 1.32300 1.05362 1.21328 1.00312 0.95633 0.82132 1.22310 0.98066 0.83744 0.93277 0.90743 1.22675 0.99232 0.98012 0.90415 1.61778 1.58857 1.02421 1.00608 1.21883 0.98542 0.98127 0.89953 1.19688 0.86622 0.87178 0.83705 1.90493 1.39424 1.31243 1.85079 1.41888 1.41493 1.32111 1.04498 1.19748 1.23980 1.15259 0.83916 0.87826 1.25272 0.97084 0.96540 0.99032 1.69621 1.35273 1.25959 1.23346 0.85795 0.78874 0.79058 0.80589 1.19217 1.20761 1.20731 1.22902 0.96586 0.90907 1.00767 1.22676 1.00351 0.94156 0.83612 1.87944 1.71918 1.26277 1.44249 1.21935 0.96207 1.01528 0.95740 1.23097 1.05166 0.97563 0.96278 1.22780 0.93496 1.01078 1.01938 0.91914 0.91209 0.91910 0.76201 0.89843 0.90670 0.89461 0.93844 0.93340 0.89081 0.77481 0.91885 0.94810 0.87262 0.88514 0.91951 0.87533 0.88889 0.88784 0.88850 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.07 37.16 0.34 -0.45 16 2 C -0.08 -0.59 2.88 -91.77 -0.26 -0.85 16 3 H 0.10 0.60 7.90 -51.93 -0.41 0.19 16 4 C 0.52 5.26 7.03 -10.99 -0.08 5.19 16 5 O -0.53 -7.38 15.08 5.56 0.08 -7.30 16 6 N -0.72 -6.57 5.40 -60.29 -0.33 -6.90 16 7 C 0.13 1.31 5.35 -4.04 -0.02 1.29 16 8 C 0.08 0.94 2.84 -26.68 -0.08 0.86 16 9 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 10 C 0.03 0.32 4.93 -3.71 -0.02 0.30 16 11 N -0.51 -8.22 4.42 -235.75 -1.04 -9.27 16 12 C 0.05 0.80 5.45 -4.98 -0.03 0.78 16 13 C 0.44 10.17 7.35 -10.98 -0.08 10.09 16 14 O -0.58 -15.09 14.25 5.55 0.08 -15.01 16 15 N -0.56 -14.00 5.29 -10.96 -0.06 -14.06 16 16 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 17 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 20 Si 0.93 20.76 29.55 -169.99 -5.02 15.73 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 C 0.02 0.25 5.30 -3.71 -0.02 0.23 16 25 C 0.07 0.88 7.01 37.21 0.26 1.14 16 26 O -0.38 -4.74 10.42 -35.23 -0.37 -5.10 16 27 C -0.14 -1.06 4.73 -90.62 -0.43 -1.49 16 28 C -0.18 -1.20 10.18 -26.73 -0.27 -1.47 16 29 C -0.16 -1.33 8.97 -26.73 -0.24 -1.57 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.30 7.56 -51.93 -0.39 -0.10 16 33 H 0.40 2.97 7.89 -40.82 -0.32 2.65 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 39 H 0.09 1.43 8.04 -51.93 -0.42 1.01 16 40 H 0.39 9.36 7.90 -40.82 -0.32 9.03 16 41 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.11 2.04 6.10 -51.93 -0.32 1.72 16 44 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.11 0.84 8.11 -51.93 -0.42 0.41 16 47 H 0.09 0.53 8.05 -51.92 -0.42 0.12 16 48 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 405.91 15.07 6.12 6.12 Total: -1.00 -32.51 405.91 -9.42 -41.93 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -8.44 Total: 11.16 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -1.17 Total: 6.19 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.70 Total: -53.73 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.20 Total: -27.41 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.51 -9.42 -41.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666692783.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.428 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds