Wall clock time and date at job start Sat Apr 11 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47024 * 2 1 4 4 N 1.46505 * 109.46816 * 240.00800 * 2 1 3 5 5 C 1.36930 * 120.00424 * 85.00303 * 4 2 1 6 6 H 1.08007 * 119.99869 * 359.97438 * 5 4 2 7 7 C 1.38818 * 120.00202 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99824 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00128 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46929 * 89.99683 * 9 7 5 11 11 H 1.48495 * 109.47093 * 210.00039 * 9 7 5 12 12 H 1.48501 * 109.47055 * 330.00325 * 9 7 5 13 13 C 1.52995 * 109.47538 * 120.00639 * 2 1 3 14 14 H 1.08994 * 109.49909 * 179.97438 * 13 2 1 15 15 C 1.53042 * 109.49439 * 299.99873 * 13 2 1 16 16 C 1.53039 * 109.53879 * 181.34735 * 15 13 2 17 17 C 1.53193 * 109.31285 * 298.63461 * 16 15 13 18 18 N 1.46930 * 108.77416 * 54.63534 * 17 16 15 19 19 C 1.34778 * 120.63044 * 126.36674 * 18 17 16 20 20 O 1.21278 * 119.99824 * 179.97438 * 19 18 17 21 21 C 1.50698 * 119.99947 * 0.02562 * 19 18 17 22 22 N 1.46501 * 109.46985 * 180.02562 * 21 19 18 23 23 C 1.46089 * 118.73532 * 89.99505 * 22 21 19 24 24 C 1.53021 * 109.92563 * 161.66144 * 23 22 21 25 25 O 1.43247 * 108.66758 * 49.16857 * 24 23 22 26 26 C 1.42967 * 112.98515 * 291.63208 * 25 24 23 27 27 C 1.33775 * 118.75420 * 270.07827 * 22 21 19 28 28 O 1.21276 * 118.76465 * 1.84783 * 27 22 21 29 29 C 1.46924 * 118.73595 * 306.64246 * 18 17 16 30 30 H 1.09000 * 109.47216 * 59.99569 * 1 2 3 31 31 H 1.09007 * 109.47192 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46955 * 299.99221 * 1 2 3 33 33 H 0.97002 * 119.99459 * 264.99341 * 4 2 1 34 34 H 0.97004 * 119.99866 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46009 * 61.33184 * 15 13 2 36 36 H 1.08994 * 109.45080 * 301.36219 * 15 13 2 37 37 H 1.09000 * 109.50446 * 178.68206 * 16 15 13 38 38 H 1.08997 * 109.52572 * 58.60118 * 16 15 13 39 39 H 1.08997 * 109.58764 * 294.84434 * 17 16 15 40 40 H 1.09001 * 109.58894 * 174.41681 * 17 16 15 41 41 H 1.08998 * 109.47397 * 59.99626 * 21 19 18 42 42 H 1.08998 * 109.46979 * 299.99349 * 21 19 18 43 43 H 1.09008 * 109.39035 * 41.52151 * 23 22 21 44 44 H 1.09000 * 109.32078 * 281.75534 * 23 22 21 45 45 H 1.08997 * 109.60208 * 289.40802 * 24 23 22 46 46 H 1.08998 * 109.60291 * 168.91840 * 24 23 22 47 47 H 1.09002 * 109.41430 * 169.70541 * 26 25 24 48 48 H 1.09004 * 109.41736 * 289.56820 * 26 25 24 49 49 H 1.09004 * 109.58607 * 173.14592 * 29 18 17 50 50 H 1.08999 * 109.58822 * 293.56426 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 -1.1963 5 6 2.1491 -0.0073 -2.3758 6 1 1.8919 1.0406 -2.4243 7 6 2.6122 -0.6615 -3.5092 8 7 2.9261 -1.9383 -3.4499 9 14 2.7900 0.2704 -5.1184 10 1 4.1519 0.8564 -5.2031 11 1 2.5803 -0.6612 -6.2556 12 1 1.7793 1.3569 -5.1755 13 6 2.0400 -0.7213 1.2491 14 1 3.1300 -0.7220 1.2492 15 6 1.5303 -0.0004 2.4991 16 6 2.0674 -0.7014 3.7490 17 6 1.5548 -2.1446 3.7804 18 7 1.9163 -2.8024 2.5173 19 6 2.5926 -3.9682 2.5192 20 8 2.8847 -4.5015 1.4698 21 6 2.9847 -4.6097 3.8252 22 7 3.7050 -5.8574 3.5595 23 6 5.1581 -5.8125 3.4153 24 6 5.7441 -7.2139 3.6004 25 8 5.0095 -8.1301 2.7802 26 6 3.6658 -8.3261 3.2275 27 6 3.0071 -6.9941 3.4565 28 8 1.7991 -6.9479 3.5528 29 6 1.5320 -2.1619 1.2521 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 2.2490 -1.6316 -1.1528 34 1 3.2494 -2.3955 -4.2420 35 1 0.4406 -0.0212 2.5113 36 1 1.8737 1.0339 2.4870 37 1 1.7232 -0.1737 4.6385 38 1 3.1572 -0.7028 3.7259 39 1 0.4709 -2.1450 3.8954 40 1 2.0129 -2.6772 4.6138 41 1 2.0890 -4.8239 4.4082 42 1 3.6286 -3.9310 4.3845 43 1 5.5759 -5.1431 4.1675 44 1 5.4106 -5.4429 2.4215 45 1 5.6598 -7.5103 4.6459 46 1 6.7922 -7.2144 3.3010 47 1 3.1095 -8.8802 2.4715 48 1 3.6730 -8.8917 4.1593 49 1 1.9750 -2.7059 0.4178 50 1 0.4461 -2.1638 1.1566 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667331587.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:39 Heat of formation + Delta-G solvation = -88.522101 kcal Electronic energy + Delta-G solvation = -31157.612534 eV Core-core repulsion = 26992.697237 eV Total energy + Delta-G solvation = -4164.915297 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.08764 -39.91506 -38.03745 -37.69290 -35.51315 -35.39925 -32.96909 -31.84841 -30.78173 -30.03036 -29.21791 -27.84473 -26.53215 -25.05141 -24.32730 -23.94898 -23.14847 -21.26367 -20.00516 -18.94024 -18.54647 -17.98089 -17.61977 -17.20901 -16.95973 -16.12487 -15.73175 -15.62488 -15.11790 -14.88224 -14.76999 -14.60330 -14.29646 -13.97786 -13.77846 -13.64721 -13.46922 -13.30665 -13.08773 -12.92719 -12.67319 -12.43102 -12.21372 -12.00701 -11.84271 -11.60294 -11.52888 -11.14672 -10.98000 -10.84837 -10.82183 -10.59716 -10.42958 -10.22983 -10.19179 -9.98363 -9.79279 -9.68379 -9.49697 -8.89539 -8.84977 -8.40438 -6.89604 -5.68055 -2.98003 2.22243 2.47687 2.74736 3.17413 3.43399 3.47569 3.52148 3.54641 4.02565 4.42222 4.45455 4.59973 4.62889 4.71609 4.75168 4.84517 4.89394 4.92550 5.00453 5.07391 5.12020 5.25789 5.27455 5.36647 5.40852 5.53986 5.62854 5.68116 5.77760 5.83331 5.87991 5.90902 5.97780 6.08645 6.15165 6.27830 6.38856 6.44758 6.45275 6.61046 6.68102 6.80567 6.92259 7.05780 7.16407 7.52699 7.75870 7.80594 8.33207 8.49344 9.60098 10.18452 10.52361 11.53986 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011353 B = 0.003166 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.779885 B = 8842.809693 C =10549.562469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.181 3.819 3 H 0.048 0.952 4 N -0.726 5.726 5 C -0.240 4.240 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.929 5.929 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.103 4.103 14 H 0.071 0.929 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.107 3.893 18 N -0.610 5.610 19 C 0.494 3.506 20 O -0.518 6.518 21 C 0.093 3.907 22 N -0.586 5.586 23 C 0.077 3.923 24 C 0.046 3.954 25 O -0.367 6.367 26 C 0.054 3.946 27 C 0.493 3.507 28 O -0.539 6.539 29 C 0.117 3.883 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.385 0.615 34 H 0.255 0.745 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.063 0.937 46 H 0.117 0.883 47 H 0.132 0.868 48 H 0.090 0.910 49 H 0.100 0.900 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.232 -6.045 24.405 25.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.368 5.368 5 C -0.372 4.372 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.577 5.577 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.123 4.123 14 H 0.090 0.910 15 C -0.153 4.153 16 C -0.172 4.172 17 C -0.017 4.017 18 N -0.345 5.345 19 C 0.280 3.720 20 O -0.393 6.393 21 C -0.033 4.033 22 N -0.319 5.319 23 C -0.046 4.046 24 C -0.031 4.031 25 O -0.284 6.284 26 C -0.025 4.025 27 C 0.281 3.719 28 O -0.416 6.416 29 C -0.005 4.005 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.132 0.868 42 H 0.124 0.876 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.081 0.919 46 H 0.135 0.865 47 H 0.150 0.850 48 H 0.108 0.892 49 H 0.118 0.882 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.871 -6.343 23.556 24.563 hybrid contribution 0.073 0.557 -0.756 0.941 sum 2.944 -5.787 22.800 23.707 Atomic orbital electron populations 1.22576 0.99546 1.00883 0.99945 1.20164 0.91824 0.95226 0.85782 0.93355 1.42526 1.78131 1.10826 1.05318 1.19214 1.36729 0.93809 0.87417 0.91274 1.24753 1.02219 0.95926 0.98000 1.69681 1.50591 1.08587 1.28836 0.86231 0.77692 0.78576 0.83925 1.21817 1.21821 1.20837 1.21687 1.00853 0.94363 0.95366 0.91014 1.21621 1.00967 0.99182 0.93509 1.21924 1.01308 0.95048 0.98920 1.21738 1.00537 0.93715 0.85662 1.48176 1.56463 1.22065 1.07771 1.20975 0.78317 0.81017 0.91715 1.90783 1.53536 1.61918 1.33070 1.21429 0.99735 0.86274 0.95877 1.47027 1.07481 1.06571 1.70835 1.22279 0.79147 0.99135 1.04045 1.23007 0.97328 0.87307 0.95436 1.88242 1.22913 1.64078 1.53201 1.22815 0.83279 0.93294 1.03141 1.20989 0.87968 0.86786 0.76186 1.90745 1.13962 1.86886 1.50011 1.21711 0.99922 0.93192 0.85637 0.92895 0.93315 0.94253 0.78038 0.93498 0.91371 0.91623 0.90920 0.91612 0.91174 0.90486 0.86836 0.87587 0.89504 0.89704 0.91883 0.86457 0.85022 0.89216 0.88199 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 8.79 37.16 0.33 -2.71 16 2 C 0.18 3.57 2.72 -67.93 -0.18 3.38 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 N -0.73 -18.61 5.04 -53.43 -0.27 -18.88 16 5 C -0.24 -6.82 9.93 -15.06 -0.15 -6.97 16 6 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -29.26 13.06 55.49 0.72 -28.54 16 9 Si 0.90 22.98 29.55 -169.99 -5.02 17.95 16 10 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 11 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C -0.10 -1.68 2.31 -90.72 -0.21 -1.89 16 14 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 15 C -0.11 -1.38 4.78 -26.69 -0.13 -1.51 16 16 C -0.13 -1.24 6.08 -26.61 -0.16 -1.41 16 17 C 0.11 1.04 6.34 -3.71 -0.02 1.01 16 18 N -0.61 -8.79 2.98 -173.03 -0.52 -9.31 16 19 C 0.49 7.90 7.76 -10.99 -0.09 7.81 16 20 O -0.52 -11.04 15.84 5.56 0.09 -10.95 16 21 C 0.09 1.04 4.11 -5.19 -0.02 1.02 16 22 N -0.59 -6.90 2.32 -175.81 -0.41 -7.30 16 23 C 0.08 0.67 6.67 -4.25 -0.03 0.64 16 24 C 0.05 0.32 6.90 37.17 0.26 0.58 16 25 O -0.37 -3.83 10.85 -35.23 -0.38 -4.21 16 26 C 0.05 0.54 6.99 35.84 0.25 0.79 16 27 C 0.49 6.56 7.57 -11.60 -0.09 6.47 16 28 O -0.54 -9.03 16.38 5.56 0.09 -8.94 16 29 C 0.12 2.04 5.20 -3.94 -0.02 2.02 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.89 6.32 -51.93 -0.33 0.57 16 32 H 0.04 0.57 6.46 -51.93 -0.34 0.24 16 33 H 0.38 10.72 6.17 -40.82 -0.25 10.46 16 34 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 35 H 0.07 0.79 6.50 -51.93 -0.34 0.45 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.53 5.93 -51.93 -0.31 0.22 16 41 H 0.11 1.22 7.09 -51.93 -0.37 0.85 16 42 H 0.11 0.77 7.48 -51.93 -0.39 0.39 16 43 H 0.09 0.47 7.99 -51.92 -0.41 0.06 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.06 0.31 8.10 -51.93 -0.42 -0.11 16 46 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.13 1.28 8.14 -51.93 -0.42 0.85 16 48 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.10 2.21 5.59 -51.93 -0.29 1.92 16 50 H 0.07 1.19 6.16 -51.93 -0.32 0.87 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -38.49 388.45 -8.16 -46.65 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -7.96 Total: 8.90 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -0.36 Total: 8.77 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: -0.47 Total: -64.03 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.20 Total: -24.11 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.49 -8.16 -46.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667331587.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.871 kcal (2) G-P(sol) polarization free energy of solvation -38.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds