Wall clock time and date at job start Sat Apr 11 2020 05:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47024 * 2 1 4 4 N 1.46505 * 109.46816 * 240.00800 * 2 1 3 5 5 C 1.36930 * 120.00424 * 85.00303 * 4 2 1 6 6 H 1.08007 * 119.99869 * 359.97438 * 5 4 2 7 7 C 1.38818 * 120.00202 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99824 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00128 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46929 * 89.99683 * 9 7 5 11 11 H 1.48495 * 109.47093 * 210.00039 * 9 7 5 12 12 H 1.48501 * 109.47055 * 330.00325 * 9 7 5 13 13 C 1.52995 * 109.47538 * 120.00639 * 2 1 3 14 14 H 1.08994 * 109.49909 * 179.97438 * 13 2 1 15 15 C 1.53042 * 109.49439 * 299.99873 * 13 2 1 16 16 C 1.53039 * 109.53879 * 181.34735 * 15 13 2 17 17 C 1.53193 * 109.31285 * 298.63461 * 16 15 13 18 18 N 1.46930 * 108.77416 * 54.63534 * 17 16 15 19 19 C 1.34778 * 120.63044 * 126.36674 * 18 17 16 20 20 O 1.21278 * 119.99824 * 179.97438 * 19 18 17 21 21 C 1.50698 * 119.99947 * 0.02562 * 19 18 17 22 22 N 1.46501 * 109.46985 * 180.02562 * 21 19 18 23 23 C 1.46089 * 118.73532 * 89.99505 * 22 21 19 24 24 C 1.53021 * 109.92563 * 161.66144 * 23 22 21 25 25 O 1.43247 * 108.66758 * 49.16857 * 24 23 22 26 26 C 1.42967 * 112.98515 * 291.63208 * 25 24 23 27 27 C 1.33775 * 118.75420 * 270.07827 * 22 21 19 28 28 O 1.21276 * 118.76465 * 1.84783 * 27 22 21 29 29 C 1.46924 * 118.73595 * 306.64246 * 18 17 16 30 30 H 1.09000 * 109.47216 * 59.99569 * 1 2 3 31 31 H 1.09007 * 109.47192 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46955 * 299.99221 * 1 2 3 33 33 H 0.97002 * 119.99459 * 264.99341 * 4 2 1 34 34 H 0.97004 * 119.99866 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46009 * 61.33184 * 15 13 2 36 36 H 1.08994 * 109.45080 * 301.36219 * 15 13 2 37 37 H 1.09000 * 109.50446 * 178.68206 * 16 15 13 38 38 H 1.08997 * 109.52572 * 58.60118 * 16 15 13 39 39 H 1.08997 * 109.58764 * 294.84434 * 17 16 15 40 40 H 1.09001 * 109.58894 * 174.41681 * 17 16 15 41 41 H 1.08998 * 109.47397 * 59.99626 * 21 19 18 42 42 H 1.08998 * 109.46979 * 299.99349 * 21 19 18 43 43 H 1.09008 * 109.39035 * 41.52151 * 23 22 21 44 44 H 1.09000 * 109.32078 * 281.75534 * 23 22 21 45 45 H 1.08997 * 109.60208 * 289.40802 * 24 23 22 46 46 H 1.08998 * 109.60291 * 168.91840 * 24 23 22 47 47 H 1.09002 * 109.41430 * 169.70541 * 26 25 24 48 48 H 1.09004 * 109.41736 * 289.56820 * 26 25 24 49 49 H 1.09004 * 109.58607 * 173.14592 * 29 18 17 50 50 H 1.08999 * 109.58822 * 293.56426 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 -1.1963 5 6 2.1491 -0.0073 -2.3758 6 1 1.8919 1.0406 -2.4243 7 6 2.6122 -0.6615 -3.5092 8 7 2.9261 -1.9383 -3.4499 9 14 2.7900 0.2704 -5.1184 10 1 4.1519 0.8564 -5.2031 11 1 2.5803 -0.6612 -6.2556 12 1 1.7793 1.3569 -5.1755 13 6 2.0400 -0.7213 1.2491 14 1 3.1300 -0.7220 1.2492 15 6 1.5303 -0.0004 2.4991 16 6 2.0674 -0.7014 3.7490 17 6 1.5548 -2.1446 3.7804 18 7 1.9163 -2.8024 2.5173 19 6 2.5926 -3.9682 2.5192 20 8 2.8847 -4.5015 1.4698 21 6 2.9847 -4.6097 3.8252 22 7 3.7050 -5.8574 3.5595 23 6 5.1581 -5.8125 3.4153 24 6 5.7441 -7.2139 3.6004 25 8 5.0095 -8.1301 2.7802 26 6 3.6658 -8.3261 3.2275 27 6 3.0071 -6.9941 3.4565 28 8 1.7991 -6.9479 3.5528 29 6 1.5320 -2.1619 1.2521 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 2.2490 -1.6316 -1.1528 34 1 3.2494 -2.3955 -4.2420 35 1 0.4406 -0.0212 2.5113 36 1 1.8737 1.0339 2.4870 37 1 1.7232 -0.1737 4.6385 38 1 3.1572 -0.7028 3.7259 39 1 0.4709 -2.1450 3.8954 40 1 2.0129 -2.6772 4.6138 41 1 2.0890 -4.8239 4.4082 42 1 3.6286 -3.9310 4.3845 43 1 5.5759 -5.1431 4.1675 44 1 5.4106 -5.4429 2.4215 45 1 5.6598 -7.5103 4.6459 46 1 6.7922 -7.2144 3.3010 47 1 3.1095 -8.8802 2.4715 48 1 3.6730 -8.8917 4.1593 49 1 1.9750 -2.7059 0.4178 50 1 0.4461 -2.1638 1.1566 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667331587.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:36 Heat of formation + Delta-G solvation = -118.284541 kcal Electronic energy + Delta-G solvation = -31158.903130 eV Core-core repulsion = 26992.697237 eV Total energy + Delta-G solvation = -4166.205894 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.04933 -41.04210 -39.21186 -38.72881 -36.96899 -36.41107 -34.70597 -33.20830 -31.79526 -31.26702 -30.41040 -29.32235 -27.47128 -26.40031 -25.76332 -24.84060 -24.58480 -22.44434 -21.16035 -20.08960 -19.68781 -19.26995 -18.80339 -18.52519 -18.05997 -17.06579 -16.83086 -16.69733 -16.54892 -16.15642 -15.92769 -15.66610 -15.50924 -15.34518 -15.13527 -14.89942 -14.54273 -14.42452 -14.13654 -14.06107 -13.91808 -13.83253 -13.37614 -13.13405 -12.99823 -12.84980 -12.78344 -12.66426 -12.34475 -12.28550 -12.13335 -11.91296 -11.80068 -11.75869 -11.64062 -11.42247 -11.20402 -11.06960 -10.95211 -10.53942 -9.89896 -9.62411 -9.03757 -7.94564 -5.24606 1.22732 1.42548 1.45588 1.54037 1.54912 1.65327 2.09080 2.54139 2.79426 3.25427 3.38063 3.46066 3.74563 3.78661 3.87356 3.88637 3.98251 4.07696 4.14896 4.16998 4.17912 4.21852 4.30598 4.35711 4.39330 4.44140 4.58082 4.61696 4.70247 4.71548 4.82143 4.84342 4.89074 4.90893 5.04545 5.08606 5.11693 5.17366 5.22509 5.37236 5.44502 5.50195 5.55096 5.66500 5.78772 6.19341 6.26135 6.39369 6.84779 7.14234 7.30836 8.09567 8.30786 9.28996 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011353 B = 0.003166 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.779885 B = 8842.809693 C =10549.562469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.171 3.829 3 H 0.049 0.951 4 N -0.743 5.743 5 C -0.237 4.237 6 H 0.079 0.921 7 C -0.083 4.083 8 N -0.975 5.975 9 Si 0.975 3.025 10 H -0.286 1.286 11 H -0.299 1.299 12 H -0.266 1.266 13 C -0.088 4.088 14 H 0.047 0.953 15 C -0.110 4.110 16 C -0.126 4.126 17 C 0.097 3.903 18 N -0.607 5.607 19 C 0.481 3.519 20 O -0.589 6.589 21 C 0.099 3.901 22 N -0.588 5.588 23 C 0.071 3.929 24 C 0.044 3.956 25 O -0.391 6.391 26 C 0.057 3.943 27 C 0.481 3.519 28 O -0.584 6.584 29 C 0.125 3.875 30 H 0.033 0.967 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.368 0.632 34 H 0.248 0.752 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.124 0.876 42 H 0.156 0.844 43 H 0.129 0.871 44 H 0.049 0.951 45 H 0.095 0.905 46 H 0.138 0.862 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.040 0.960 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.434 -4.268 28.354 28.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.062 3.938 3 H 0.067 0.933 4 N -0.383 5.383 5 C -0.369 4.369 6 H 0.097 0.903 7 C -0.274 4.274 8 N -0.626 5.626 9 Si 0.803 3.197 10 H -0.213 1.213 11 H -0.226 1.226 12 H -0.190 1.190 13 C -0.108 4.108 14 H 0.065 0.935 15 C -0.148 4.148 16 C -0.164 4.164 17 C -0.024 4.024 18 N -0.340 5.340 19 C 0.269 3.731 20 O -0.469 6.469 21 C -0.027 4.027 22 N -0.320 5.320 23 C -0.051 4.051 24 C -0.032 4.032 25 O -0.309 6.309 26 C -0.022 4.022 27 C 0.270 3.730 28 O -0.465 6.465 29 C 0.002 3.998 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.200 0.800 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.132 0.868 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.133 0.867 41 H 0.141 0.859 42 H 0.174 0.826 43 H 0.147 0.853 44 H 0.067 0.933 45 H 0.113 0.887 46 H 0.156 0.844 47 H 0.143 0.857 48 H 0.144 0.856 49 H 0.059 0.941 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.069 -4.478 27.590 28.119 hybrid contribution -0.002 0.075 -1.926 1.928 sum 3.068 -4.404 25.664 26.219 Atomic orbital electron populations 1.22400 0.97584 1.00558 1.01123 1.20494 0.93066 0.94986 0.85205 0.93277 1.42826 1.78498 1.10316 1.06691 1.19678 1.34607 0.94222 0.88384 0.90291 1.25640 1.03175 0.96800 1.01797 1.69889 1.52832 1.10577 1.29315 0.85117 0.78002 0.77373 0.79163 1.21310 1.22589 1.19018 1.21497 0.99218 0.93794 0.96288 0.93464 1.21627 1.01624 0.99426 0.92127 1.21921 1.01218 0.94437 0.98786 1.22202 1.01906 0.94214 0.84079 1.48316 1.55522 1.21796 1.08388 1.22036 0.77357 0.80927 0.92753 1.90756 1.56368 1.63851 1.35918 1.21620 1.01318 0.86684 0.93082 1.47256 1.08747 1.06348 1.69606 1.22521 0.77673 1.01382 1.03476 1.23303 0.97667 0.85436 0.96821 1.88214 1.22993 1.64909 1.54800 1.22854 0.82979 0.91726 1.04607 1.21684 0.87673 0.88341 0.75305 1.90707 1.15826 1.87753 1.52254 1.21326 0.99191 0.93414 0.85842 0.94825 0.94384 0.89840 0.79959 0.94318 0.90221 0.90428 0.86812 0.91745 0.89841 0.86695 0.85857 0.82645 0.85266 0.93267 0.88715 0.84410 0.85714 0.85609 0.94140 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.55 8.79 71.98 0.63 -4.91 16 2 C 0.17 6.84 2.72 44.99 0.12 6.96 16 3 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 4 N -0.74 -39.97 5.04 -322.94 -1.63 -41.60 16 5 C -0.24 -13.82 9.93 84.04 0.83 -12.99 16 6 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 7 C -0.08 -5.03 5.50 84.86 0.47 -4.56 16 8 N -0.97 -64.76 13.06 21.65 0.28 -64.48 16 9 Si 0.97 48.58 29.55 68.60 2.03 50.61 16 10 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 11 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 C -0.09 -2.89 2.31 -10.86 -0.03 -2.92 16 14 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 15 C -0.11 -2.29 4.78 30.62 0.15 -2.15 16 16 C -0.13 -1.76 6.08 30.67 0.19 -1.58 16 17 C 0.10 1.52 6.34 86.36 0.55 2.07 16 18 N -0.61 -17.33 2.98 -819.74 -2.44 -19.77 16 19 C 0.48 15.74 7.76 87.66 0.68 16.42 16 20 O -0.59 -27.22 15.84 -3.02 -0.05 -27.27 16 21 C 0.10 2.03 4.11 85.63 0.35 2.39 16 22 N -0.59 -13.33 2.32 -829.10 -1.92 -15.26 16 23 C 0.07 1.15 6.67 86.46 0.58 1.73 16 24 C 0.04 0.52 6.90 71.99 0.50 1.02 16 25 O -0.39 -7.94 10.85 -148.98 -1.62 -9.56 16 26 C 0.06 1.12 6.99 71.13 0.50 1.62 16 27 C 0.48 12.83 7.57 87.70 0.66 13.49 16 28 O -0.58 -20.08 16.38 -3.02 -0.05 -20.12 16 29 C 0.13 4.59 5.20 86.22 0.45 5.04 16 30 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.04 1.41 6.32 -2.38 -0.02 1.39 16 32 H 0.08 2.20 6.46 -2.39 -0.02 2.18 16 33 H 0.37 22.15 6.17 -92.71 -0.57 21.58 16 34 H 0.25 16.03 8.31 -92.71 -0.77 15.26 16 35 H 0.08 1.51 6.50 -2.39 -0.02 1.49 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.11 0.98 5.93 -2.39 -0.01 0.97 16 41 H 0.12 2.35 7.09 -2.39 -0.02 2.34 16 42 H 0.16 1.58 7.48 -2.39 -0.02 1.56 16 43 H 0.13 0.94 7.99 -2.38 -0.02 0.92 16 44 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.09 0.57 8.10 -2.39 -0.02 0.55 16 46 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 48 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 49 H 0.04 1.98 5.59 -2.38 -0.01 1.96 16 50 H 0.07 2.45 6.16 -2.39 -0.01 2.44 16 Total: -1.00 -94.25 388.45 1.61 -92.64 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: 0.38 Total: 33.19 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: 6.63 Total: 21.63 kcal Atomic # 7 Polarization: -135.40 SS G_CDS: -5.71 Total: -141.11 kcal Atomic # 8 Polarization: -55.23 SS G_CDS: -1.71 Total: -56.95 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.61 kcal Total: -94.25 1.61 -92.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667331587.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.648 kcal (2) G-P(sol) polarization free energy of solvation -94.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds