Wall clock time and date at job start Sat Apr 11 2020 05:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.57375 * 2 1 4 4 C 1.53103 * 109.59949 * 239.87553 * 2 1 3 5 5 O 1.42908 * 109.48733 * 182.57996 * 4 2 1 6 6 C 1.42902 * 114.09805 * 61.11081 * 5 4 2 7 7 C 1.53091 * 109.41727 * 298.84276 * 6 5 4 8 8 C 1.53177 * 109.16181 * 57.60508 * 7 6 5 9 9 H 1.08999 * 109.54048 * 62.98021 * 8 7 6 10 10 C 1.50706 * 109.54480 * 183.15068 * 8 7 6 11 11 O 1.21286 * 119.99575 * 119.82339 * 10 8 7 12 12 N 1.34774 * 120.00059 * 299.83254 * 10 8 7 13 13 C 1.46496 * 119.99809 * 179.97438 * 12 10 8 14 14 C 1.50704 * 109.47334 * 179.97438 * 13 12 10 15 15 C 1.30998 * 119.99948 * 127.00137 * 14 13 12 16 16 C 1.50696 * 120.00157 * 7.56651 * 15 14 13 17 17 N 1.46908 * 109.47405 * 127.15084 * 16 15 14 18 18 C 1.46895 * 110.99993 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.46883 * 180.02562 * 18 17 16 20 20 O 1.21289 * 120.00487 * 359.97438 * 19 18 17 21 21 N 1.34786 * 120.00081 * 179.97438 * 19 18 17 22 22 C 1.37091 * 120.00117 * 179.97438 * 21 19 18 23 23 H 1.08003 * 120.00087 * 0.02562 * 22 21 19 24 24 C 1.38952 * 120.00073 * 180.02562 * 22 21 19 25 25 N 1.31405 * 119.99717 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99889 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47194 * 90.00429 * 26 24 22 28 28 H 1.48503 * 109.46895 * 210.00080 * 26 24 22 29 29 H 1.48496 * 109.47520 * 330.00098 * 26 24 22 30 30 H 1.08998 * 109.47238 * 299.84814 * 1 2 3 31 31 H 1.09005 * 109.46730 * 59.84669 * 1 2 3 32 32 H 1.08999 * 109.47174 * 179.85013 * 1 2 3 33 33 H 1.08996 * 109.48208 * 62.54977 * 4 2 1 34 34 H 1.08997 * 109.40453 * 302.55860 * 4 2 1 35 35 H 1.08996 * 109.48172 * 178.86213 * 6 5 4 36 36 H 1.08997 * 109.47803 * 58.82340 * 6 5 4 37 37 H 1.09003 * 109.52273 * 297.70369 * 7 6 5 38 38 H 1.08996 * 109.53013 * 177.51453 * 7 6 5 39 39 H 0.96998 * 120.00456 * 359.97438 * 12 10 8 40 40 H 1.09005 * 109.47456 * 59.99592 * 13 12 10 41 41 H 1.09004 * 109.47667 * 299.99677 * 13 12 10 42 42 H 1.08002 * 119.99777 * 307.00585 * 14 13 12 43 43 H 1.08002 * 119.99876 * 187.55599 * 15 14 13 44 44 H 1.09003 * 109.47480 * 7.14971 * 16 15 14 45 45 H 1.08996 * 109.47169 * 247.15231 * 16 15 14 46 46 H 1.00900 * 110.99389 * 56.04682 * 17 16 15 47 47 H 1.09007 * 109.47276 * 299.99777 * 18 17 16 48 48 H 1.08999 * 109.47433 * 60.00007 * 18 17 16 49 49 H 0.97000 * 119.99636 * 359.97438 * 21 19 18 50 50 H 0.97000 * 120.00161 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0436 -0.7239 -1.2475 5 8 3.4714 -0.7752 -1.2151 6 6 4.0044 -1.4836 -0.0943 7 6 3.5716 -0.7890 1.1995 8 6 2.0419 -0.7252 1.2484 9 1 1.6355 -1.7362 1.2751 10 6 1.6077 0.0254 2.4810 11 8 0.9505 1.0391 2.3737 12 7 1.9499 -0.4297 3.7026 13 6 1.5284 0.3002 4.9007 14 6 2.0359 -0.4125 6.1278 15 6 2.7283 0.2426 7.0263 16 6 2.8732 1.7389 6.9223 17 7 2.4721 2.3593 8.1921 18 6 2.6000 3.8212 8.1273 19 6 2.1814 4.4209 9.4449 20 8 1.8122 3.7014 10.3489 21 7 2.2171 5.7570 9.6190 22 6 1.8357 6.3026 10.8174 23 1 1.5070 5.6619 11.6223 24 6 1.8720 7.6801 10.9967 25 7 2.2715 8.4597 10.0172 26 14 1.3531 8.4234 12.6299 27 1 2.5338 8.5256 13.5247 28 1 0.7875 9.7772 12.4002 29 1 0.3254 7.5586 13.2632 30 1 -0.3633 0.5115 0.8913 31 1 -0.3633 0.5162 -0.8887 32 1 -0.3633 -1.0276 -0.0027 33 1 1.7193 -0.1868 -2.1388 34 1 1.6438 -1.7377 -1.2682 35 1 5.0927 -1.4937 -0.1548 36 1 3.6303 -2.5073 -0.1000 37 1 3.9793 0.2216 1.2244 38 1 3.9402 -1.3526 2.0565 39 1 2.4754 -1.2406 3.7885 40 1 0.4398 0.3480 4.9329 41 1 1.9357 1.3109 4.8727 42 1 1.8287 -1.4634 6.2662 43 1 3.1952 -0.2897 7.8419 44 1 2.2366 2.1107 6.1193 45 1 3.9121 1.9893 6.7078 46 1 3.0045 1.9831 8.9623 47 1 3.6370 4.0865 7.9210 48 1 1.9613 4.2071 7.3328 49 1 2.5126 6.3325 8.8962 50 1 2.2965 9.4213 10.1421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716340987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:09 Heat of formation + Delta-G solvation = -133.389527 kcal Electronic energy + Delta-G solvation = -28514.091341 eV Core-core repulsion = 24347.230446 eV Total energy + Delta-G solvation = -4166.860895 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.53330 -40.20655 -39.64392 -38.08767 -36.33240 -35.79949 -35.27479 -34.08243 -33.28117 -32.88455 -29.46866 -28.29916 -27.35383 -26.62817 -25.79422 -24.50118 -23.27614 -22.07837 -21.22916 -20.95579 -20.06760 -19.71795 -18.31413 -17.81573 -17.36797 -17.08407 -16.96277 -16.79072 -16.47348 -16.22292 -16.08437 -15.91616 -15.50861 -15.36540 -15.23237 -15.02968 -14.91077 -14.33873 -14.24996 -13.96281 -13.54394 -13.46061 -13.36199 -13.22168 -13.07203 -12.97565 -12.83387 -12.75211 -12.43622 -12.42444 -12.13059 -11.98223 -11.70992 -11.59612 -11.52598 -11.41852 -10.97547 -10.47744 -10.38656 -10.26478 -10.04330 -9.95140 -9.29806 -8.48437 -5.97727 1.02235 1.37138 1.40957 1.54242 1.60598 2.01868 2.27602 2.32660 2.98523 2.99726 3.18482 3.51711 3.58220 3.67414 3.72721 3.75967 3.92351 4.04511 4.22241 4.23273 4.26929 4.29062 4.41866 4.44860 4.47077 4.50725 4.51818 4.62333 4.64819 4.68416 4.74179 4.76405 4.82256 4.94296 4.95951 5.09612 5.14117 5.29843 5.32726 5.39005 5.48327 5.56300 5.78559 5.86427 6.05582 6.27956 6.37107 6.55879 6.57317 7.09977 7.26271 7.53068 8.07951 8.68988 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019458 B = 0.001567 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.623642 B =17868.955369 C =18483.068245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.106 4.106 3 H 0.056 0.944 4 C 0.068 3.932 5 O -0.406 6.406 6 C 0.058 3.942 7 C -0.144 4.144 8 C -0.099 4.099 9 H 0.125 0.875 10 C 0.511 3.489 11 O -0.578 6.578 12 N -0.710 5.710 13 C 0.139 3.861 14 C -0.161 4.161 15 C -0.126 4.126 16 C 0.071 3.929 17 N -0.678 5.678 18 C 0.064 3.936 19 C 0.437 3.563 20 O -0.622 6.622 21 N -0.573 5.573 22 C -0.336 4.336 23 H 0.080 0.920 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.996 3.004 27 H -0.269 1.269 28 H -0.271 1.271 29 H -0.273 1.273 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.106 0.894 39 H 0.417 0.583 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.145 0.855 43 H 0.130 0.870 44 H 0.081 0.919 45 H 0.049 0.951 46 H 0.347 0.653 47 H 0.068 0.932 48 H 0.099 0.901 49 H 0.396 0.604 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.605 -24.810 -23.209 34.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.125 4.125 3 H 0.074 0.926 4 C -0.008 4.008 5 O -0.325 6.325 6 C -0.018 4.018 7 C -0.182 4.182 8 C -0.120 4.120 9 H 0.143 0.857 10 C 0.299 3.701 11 O -0.457 6.457 12 N -0.362 5.362 13 C 0.016 3.984 14 C -0.181 4.181 15 C -0.145 4.145 16 C -0.056 4.056 17 N -0.311 5.311 18 C -0.069 4.069 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.210 5.210 22 C -0.465 4.465 23 H 0.098 0.902 24 C -0.214 4.214 25 N -0.561 5.561 26 Si 0.819 3.181 27 H -0.194 1.194 28 H -0.196 1.196 29 H -0.198 1.198 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.124 0.876 39 H 0.254 0.746 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.163 0.837 43 H 0.147 0.853 44 H 0.099 0.901 45 H 0.067 0.933 46 H 0.166 0.834 47 H 0.086 0.914 48 H 0.117 0.883 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.362 -24.255 -22.989 33.587 hybrid contribution 0.725 0.950 0.949 1.526 sum 4.086 -23.306 -22.040 32.336 Atomic orbital electron populations 1.21844 0.93939 1.02404 1.02566 1.21542 0.96984 0.99590 0.94411 0.92560 1.22740 0.80287 1.00581 0.97232 1.87936 1.21178 1.76979 1.46447 1.22771 1.00164 0.95068 0.83819 1.22222 0.92448 1.02588 1.00902 1.21473 0.98022 1.01158 0.91307 0.85681 1.21108 0.78662 0.84839 0.85493 1.90691 1.40732 1.27109 1.87203 1.45871 1.55975 1.29828 1.04565 1.20383 0.99386 0.95480 0.83156 1.22766 0.98733 1.01467 0.95094 1.22823 0.97763 0.94176 0.99763 1.21312 0.99481 0.93105 0.91735 1.60085 1.62526 1.02734 1.05734 1.21540 1.01147 0.89484 0.94706 1.20823 0.83432 0.82446 0.90814 1.90483 1.53630 1.61012 1.45747 1.41941 1.58595 1.05778 1.14672 1.19695 1.43022 0.91337 0.92487 0.90195 1.26087 0.96767 0.95872 1.02652 1.69675 1.47269 1.05603 1.33590 0.84891 0.78604 0.77463 0.77146 1.19433 1.19559 1.19770 0.92855 0.92115 0.91369 0.88273 0.90981 0.87402 0.90726 0.92436 0.87573 0.74608 0.92239 0.91691 0.83722 0.85265 0.90135 0.93311 0.83377 0.91380 0.88305 0.76997 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.93 71.98 0.64 -1.66 16 2 C -0.11 -1.57 2.05 -10.70 -0.02 -1.59 16 3 H 0.06 1.18 8.03 -2.39 -0.02 1.16 16 4 C 0.07 0.77 6.13 72.02 0.44 1.21 16 5 O -0.41 -5.83 10.77 -148.98 -1.60 -7.43 16 6 C 0.06 0.45 6.84 72.01 0.49 0.95 16 7 C -0.14 -1.23 5.30 30.68 0.16 -1.07 16 8 C -0.10 -1.13 2.11 -11.42 -0.02 -1.16 16 9 H 0.13 0.77 8.14 -2.39 -0.02 0.76 16 10 C 0.51 9.36 6.88 87.66 0.60 9.97 16 11 O -0.58 -16.33 13.87 -3.05 -0.04 -16.37 16 12 N -0.71 -9.67 5.45 -466.77 -2.55 -12.22 16 13 C 0.14 2.55 5.76 85.64 0.49 3.04 16 14 C -0.16 -2.39 9.63 25.65 0.25 -2.14 16 15 C -0.13 -2.28 9.77 25.65 0.25 -2.03 16 16 C 0.07 1.66 5.77 85.55 0.49 2.16 16 17 N -0.68 -21.69 6.11 -521.98 -3.19 -24.88 16 18 C 0.06 2.26 6.17 85.56 0.53 2.79 16 19 C 0.44 21.36 7.82 87.66 0.69 22.05 16 20 O -0.62 -35.11 15.78 -3.06 -0.05 -35.16 16 21 N -0.57 -30.14 5.29 -306.98 -1.62 -31.76 16 22 C -0.34 -19.44 9.68 84.04 0.81 -18.63 16 23 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 24 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 25 N -0.92 -50.53 13.05 21.66 0.28 -50.24 16 26 Si 1.00 43.49 29.55 68.60 2.03 45.52 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 28 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 29 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 30 H 0.05 1.17 5.80 -2.39 -0.01 1.15 16 31 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.11 0.34 7.68 -2.39 -0.02 0.32 16 39 H 0.42 2.66 7.96 -92.71 -0.74 1.93 16 40 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.07 1.44 5.30 -2.38 -0.01 1.43 16 42 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 43 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 44 H 0.08 1.96 5.30 -2.39 -0.01 1.95 16 45 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 46 H 0.35 11.28 8.42 -89.69 -0.76 10.53 16 47 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 48 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 49 H 0.40 19.84 7.90 -92.71 -0.73 19.11 16 50 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -77.18 405.21 -1.72 -78.91 By element: Atomic # 1 Polarization: 41.32 SS G_CDS: -1.25 Total: 40.06 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 6.27 Total: 13.59 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -7.08 Total: -119.11 kcal Atomic # 8 Polarization: -57.27 SS G_CDS: -1.69 Total: -58.97 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -77.18 -1.72 -78.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716340987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.483 kcal (2) G-P(sol) polarization free energy of solvation -77.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds