Wall clock time and date at job start Sat Apr 11 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47653 * 2 1 4 4 N 1.46503 * 109.47527 * 120.00102 * 2 1 3 5 5 C 1.34772 * 119.99758 * 274.99984 * 4 2 1 6 6 O 1.21278 * 120.00590 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99554 * 179.97438 * 5 4 2 8 8 C 1.53181 * 109.54292 * 180.02562 * 7 5 4 9 9 C 1.53096 * 109.16280 * 183.15441 * 8 7 5 10 10 O 1.42905 * 109.41382 * 57.60845 * 9 8 7 11 11 C 1.42902 * 114.09583 * 298.83698 * 10 9 8 12 12 C 1.53090 * 109.41282 * 61.16326 * 11 10 9 13 13 C 1.53001 * 109.47304 * 240.00166 * 2 1 3 14 14 C 1.53927 * 113.74080 * 158.76461 * 13 2 1 15 15 N 1.48189 * 86.10712 * 221.96064 * 14 13 2 16 16 C 1.46891 * 111.07305 * 137.51834 * 15 14 13 17 17 C 1.50704 * 109.47355 * 90.56772 * 16 15 14 18 18 O 1.21296 * 119.99315 * 359.97438 * 17 16 15 19 19 N 1.34768 * 120.00217 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99964 * 180.02562 * 19 17 16 21 21 H 1.07997 * 119.99989 * 359.97438 * 20 19 17 22 22 C 1.38954 * 120.00078 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00037 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99996 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47237 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47061 * 119.99941 * 24 22 20 27 27 H 1.48500 * 109.47308 * 239.99999 * 24 22 20 28 28 C 1.47959 * 90.79443 * 24.59850 * 15 14 13 29 29 H 1.08999 * 109.47653 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47154 * 299.99627 * 1 2 3 31 31 H 1.09001 * 109.47276 * 59.99715 * 1 2 3 32 32 H 0.96999 * 119.99621 * 94.99716 * 4 2 1 33 33 H 1.09005 * 109.61699 * 300.22267 * 7 5 4 34 34 H 1.08998 * 109.52547 * 63.24641 * 8 7 5 35 35 H 1.09004 * 109.52249 * 303.05521 * 8 7 5 36 36 H 1.08996 * 109.47593 * 177.59033 * 9 8 7 37 37 H 1.09001 * 109.48107 * 297.61277 * 9 8 7 38 38 H 1.09003 * 109.47624 * 181.14087 * 11 10 9 39 39 H 1.09000 * 109.48246 * 301.17851 * 11 10 9 40 40 H 1.09005 * 109.52564 * 62.29704 * 12 11 10 41 41 H 1.08998 * 109.52249 * 182.41867 * 12 11 10 42 42 H 1.09004 * 112.93897 * 290.33500 * 13 2 1 43 43 H 1.09005 * 113.75917 * 336.24316 * 14 13 2 44 44 H 1.08997 * 113.76212 * 107.59979 * 14 13 2 45 45 H 1.09006 * 109.47014 * 210.56773 * 16 15 14 46 46 H 1.09001 * 109.47238 * 330.56698 * 16 15 14 47 47 H 0.97001 * 120.00501 * 0.02562 * 19 17 16 48 48 H 0.96998 * 120.00274 * 180.02562 * 23 22 20 49 49 H 1.09014 * 113.75648 * 221.08740 * 28 15 14 50 50 H 1.08993 * 113.86183 * 89.74093 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8591 1.1586 2.4115 7 6 2.6490 -0.7289 3.5876 8 6 2.7007 0.2538 4.7615 9 6 3.2854 -0.4558 5.9856 10 8 4.5829 -0.9626 5.6661 11 6 4.5900 -1.9219 4.6069 12 6 4.0578 -1.2711 3.3275 13 6 2.0400 -0.7212 -1.2493 14 6 3.4848 -0.3524 -1.6312 15 7 2.9993 -0.3202 -3.0310 16 6 3.5498 0.8335 -3.7545 17 6 4.8444 0.4395 -4.4178 18 8 5.2670 -0.6912 -4.2989 19 7 5.5325 1.3434 -5.1429 20 6 6.7100 0.9848 -5.7467 21 1 7.0863 -0.0220 -5.6409 22 6 7.4197 1.9169 -6.4939 23 7 6.9620 3.1420 -6.6222 24 14 9.0243 1.4284 -7.3159 25 1 9.3186 0.0033 -7.0197 26 1 8.9050 1.6148 -8.7844 27 1 10.1254 2.2789 -6.7968 28 6 1.6207 -0.0473 -2.5683 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.2490 -1.6318 1.1525 33 1 1.9798 -1.5538 3.8323 34 1 1.6935 0.6027 4.9893 35 1 3.3306 1.1035 4.4978 36 1 3.3644 0.2505 6.8119 37 1 2.6335 -1.2806 6.2734 38 1 5.6088 -2.2716 4.4401 39 1 3.9553 -2.7659 4.8766 40 1 4.7149 -0.4522 3.0347 41 1 4.0220 -2.0126 2.5294 42 1 1.8527 -1.7948 -1.2262 43 1 3.8042 0.6194 -1.2547 44 1 4.2070 -1.1445 -1.4338 45 1 2.8379 1.1604 -4.5126 46 1 3.7337 1.6479 -3.0537 47 1 5.1947 2.2478 -5.2377 48 1 7.4572 3.7926 -7.1441 49 1 0.8561 -0.5963 -3.1182 50 1 1.3917 1.0134 -2.4661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717543295.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:41 Heat of formation + Delta-G solvation = -94.406513 kcal Electronic energy + Delta-G solvation = -29648.827045 eV Core-core repulsion = 25483.656581 eV Total energy + Delta-G solvation = -4165.170465 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.83950 -40.02792 -38.82576 -37.74955 -35.48929 -34.15438 -33.85851 -31.76193 -31.33203 -31.07529 -29.42812 -26.63931 -25.96118 -25.57038 -24.15671 -23.90138 -22.26609 -21.10455 -20.45930 -19.56248 -19.16822 -17.91080 -17.54499 -16.78978 -16.37790 -16.31756 -16.07911 -15.49201 -15.28208 -15.15976 -14.81507 -14.77703 -14.46857 -14.14327 -14.01596 -13.72850 -13.53578 -13.29042 -13.07005 -12.81713 -12.66465 -12.56931 -12.34037 -11.96423 -11.83422 -11.74585 -11.60757 -11.38190 -11.19620 -11.08469 -10.95712 -10.87488 -10.68818 -10.67386 -10.33093 -10.24317 -10.19661 -9.76057 -9.49034 -9.33956 -8.70443 -8.15424 -7.93803 -6.39559 -3.80254 2.37462 2.84348 3.17519 3.27702 3.35008 3.49244 3.88865 3.95066 4.15226 4.20808 4.25982 4.31718 4.39855 4.52045 4.55803 4.76734 4.81603 4.96055 5.00489 5.01215 5.10230 5.16210 5.17873 5.19974 5.23144 5.28550 5.36558 5.39201 5.43319 5.49396 5.59505 5.63955 5.68239 5.69137 5.74864 5.75992 5.87883 5.89390 5.99363 6.12857 6.29543 6.31293 6.58466 6.78642 7.17430 7.23819 7.57264 7.97606 8.08647 8.64582 9.20799 9.57343 10.09701 10.78477 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.002156 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.655189 B =12986.486676 C =14320.150310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 H 0.088 0.912 4 N -0.722 5.722 5 C 0.520 3.480 6 O -0.538 6.538 7 C -0.109 4.109 8 C -0.136 4.136 9 C 0.061 3.939 10 O -0.382 6.382 11 C 0.063 3.937 12 C -0.149 4.149 13 C -0.125 4.125 14 C 0.018 3.982 15 N -0.449 5.449 16 C 0.010 3.990 17 C 0.447 3.553 18 O -0.576 6.576 19 N -0.568 5.568 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.010 3.990 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.400 0.600 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.050 0.950 38 H 0.099 0.901 39 H 0.052 0.948 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.057 0.943 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.091 0.909 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.762 -7.576 22.074 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.044 3.956 3 H 0.106 0.894 4 N -0.373 5.373 5 C 0.306 3.694 6 O -0.414 6.414 7 C -0.131 4.131 8 C -0.174 4.174 9 C -0.016 4.016 10 O -0.301 6.301 11 C -0.014 4.014 12 C -0.187 4.187 13 C -0.145 4.145 14 C -0.111 4.111 15 N -0.171 5.171 16 C -0.122 4.122 17 C 0.232 3.768 18 O -0.460 6.460 19 N -0.205 5.205 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.120 4.120 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.234 0.766 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.069 0.931 38 H 0.117 0.883 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.122 0.878 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.075 0.925 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.109 0.891 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.286 -7.804 21.707 26.620 hybrid contribution 0.291 0.720 -0.440 0.893 sum -12.996 -7.084 21.267 25.910 Atomic orbital electron populations 1.22129 0.94990 1.02183 1.02585 1.21062 0.94156 0.97248 0.83092 0.89378 1.46078 1.67463 1.14112 1.09645 1.20529 0.77173 0.87272 0.84462 1.90710 1.49810 1.15931 1.84960 1.21387 0.98179 0.99488 0.94003 1.22030 1.03029 0.98540 0.93832 1.22631 0.84540 0.97658 0.96791 1.87970 1.28842 1.59692 1.53564 1.22583 1.02320 0.90527 0.85993 1.22222 0.95139 1.02037 0.99322 1.23316 0.97019 1.01095 0.93022 1.24006 0.95943 1.01707 0.89410 1.68409 1.01640 1.35828 1.11226 1.22481 0.97831 0.92779 0.99156 1.19688 0.86379 0.86517 0.84218 1.90515 1.70327 1.20430 1.64684 1.41890 1.21337 1.12336 1.44946 1.19739 0.97628 0.98708 1.26576 0.87935 1.25259 0.99896 0.95003 0.97915 1.69619 1.39998 1.03447 1.41399 0.85806 0.81091 0.78843 0.78643 1.19241 1.20756 1.20781 1.23950 0.94293 0.99727 0.94001 0.92372 0.92270 0.91305 0.76564 0.88503 0.90173 0.89990 0.88474 0.93132 0.88296 0.92931 0.90091 0.90060 0.87844 0.91451 0.89151 0.89415 0.92476 0.77562 0.91966 0.89098 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.31 37.15 0.35 -1.00 16 2 C 0.15 1.41 2.38 -67.93 -0.16 1.25 16 3 H 0.09 1.04 7.41 -51.93 -0.39 0.66 16 4 N -0.72 -5.96 4.99 -53.81 -0.27 -6.23 16 5 C 0.52 5.18 7.12 -10.99 -0.08 5.11 16 6 O -0.54 -7.54 15.63 5.56 0.09 -7.45 16 7 C -0.11 -0.79 2.61 -91.59 -0.24 -1.03 16 8 C -0.14 -1.08 4.73 -26.59 -0.13 -1.20 16 9 C 0.06 0.41 6.84 37.21 0.25 0.66 16 10 O -0.38 -3.38 10.77 -35.23 -0.38 -3.76 16 11 C 0.06 0.41 6.84 37.20 0.25 0.66 16 12 C -0.15 -1.00 5.30 -26.59 -0.14 -1.14 16 13 C -0.13 -1.27 3.46 -89.69 -0.31 -1.58 16 14 C 0.02 0.25 7.53 -2.64 -0.02 0.23 16 15 N -0.45 -7.30 5.65 -239.50 -1.35 -8.65 16 16 C 0.01 0.17 5.28 -4.98 -0.03 0.15 16 17 C 0.45 10.83 7.83 -10.99 -0.09 10.74 16 18 O -0.58 -16.07 16.01 5.54 0.09 -15.98 16 19 N -0.57 -14.71 5.29 -10.96 -0.06 -14.77 16 20 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 21 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.94 13.05 55.50 0.72 -24.21 16 24 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 C 0.01 0.11 6.64 -2.76 -0.02 0.10 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.54 7.51 -51.93 -0.39 0.14 16 32 H 0.40 2.36 8.12 -40.82 -0.33 2.03 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.82 8.02 -51.93 -0.42 0.40 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.41 7.70 -51.93 -0.40 0.01 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 0.96 7.33 -51.93 -0.38 0.58 16 44 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 45 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 46 H 0.06 0.94 7.39 -51.93 -0.38 0.56 16 47 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 50 H 0.07 0.74 7.88 -51.93 -0.41 0.33 16 LS Contribution 403.84 15.07 6.09 6.09 Total: -1.00 -35.23 403.84 -9.11 -44.34 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -8.42 Total: 9.48 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -0.59 Total: 4.84 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.95 Total: -53.86 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.20 Total: -27.19 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.23 -9.11 -44.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717543295.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.067 kcal (2) G-P(sol) polarization free energy of solvation -35.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds