Wall clock time and date at job start Sat Apr 11 2020 05:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47653 * 2 1 4 4 N 1.46503 * 109.47527 * 120.00102 * 2 1 3 5 5 C 1.34772 * 119.99758 * 274.99984 * 4 2 1 6 6 O 1.21278 * 120.00590 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99554 * 179.97438 * 5 4 2 8 8 C 1.53181 * 109.54292 * 180.02562 * 7 5 4 9 9 C 1.53096 * 109.16280 * 183.15441 * 8 7 5 10 10 O 1.42905 * 109.41382 * 57.60845 * 9 8 7 11 11 C 1.42902 * 114.09583 * 298.83698 * 10 9 8 12 12 C 1.53090 * 109.41282 * 61.16326 * 11 10 9 13 13 C 1.53001 * 109.47304 * 240.00166 * 2 1 3 14 14 C 1.53927 * 113.74080 * 158.76461 * 13 2 1 15 15 N 1.48189 * 86.10712 * 221.96064 * 14 13 2 16 16 C 1.46891 * 111.07305 * 137.51834 * 15 14 13 17 17 C 1.50704 * 109.47355 * 90.56772 * 16 15 14 18 18 O 1.21296 * 119.99315 * 359.97438 * 17 16 15 19 19 N 1.34768 * 120.00217 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99964 * 180.02562 * 19 17 16 21 21 H 1.07997 * 119.99989 * 359.97438 * 20 19 17 22 22 C 1.38954 * 120.00078 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00037 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99996 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47237 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47061 * 119.99941 * 24 22 20 27 27 H 1.48500 * 109.47308 * 239.99999 * 24 22 20 28 28 C 1.47959 * 90.79443 * 24.59850 * 15 14 13 29 29 H 1.08999 * 109.47653 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47154 * 299.99627 * 1 2 3 31 31 H 1.09001 * 109.47276 * 59.99715 * 1 2 3 32 32 H 0.96999 * 119.99621 * 94.99716 * 4 2 1 33 33 H 1.09005 * 109.61699 * 300.22267 * 7 5 4 34 34 H 1.08998 * 109.52547 * 63.24641 * 8 7 5 35 35 H 1.09004 * 109.52249 * 303.05521 * 8 7 5 36 36 H 1.08996 * 109.47593 * 177.59033 * 9 8 7 37 37 H 1.09001 * 109.48107 * 297.61277 * 9 8 7 38 38 H 1.09003 * 109.47624 * 181.14087 * 11 10 9 39 39 H 1.09000 * 109.48246 * 301.17851 * 11 10 9 40 40 H 1.09005 * 109.52564 * 62.29704 * 12 11 10 41 41 H 1.08998 * 109.52249 * 182.41867 * 12 11 10 42 42 H 1.09004 * 112.93897 * 290.33500 * 13 2 1 43 43 H 1.09005 * 113.75917 * 336.24316 * 14 13 2 44 44 H 1.08997 * 113.76212 * 107.59979 * 14 13 2 45 45 H 1.09006 * 109.47014 * 210.56773 * 16 15 14 46 46 H 1.09001 * 109.47238 * 330.56698 * 16 15 14 47 47 H 0.97001 * 120.00501 * 0.02562 * 19 17 16 48 48 H 0.96998 * 120.00274 * 180.02562 * 23 22 20 49 49 H 1.09014 * 113.75648 * 221.08740 * 28 15 14 50 50 H 1.08993 * 113.86183 * 89.74093 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8591 1.1586 2.4115 7 6 2.6490 -0.7289 3.5876 8 6 2.7007 0.2538 4.7615 9 6 3.2854 -0.4558 5.9856 10 8 4.5829 -0.9626 5.6661 11 6 4.5900 -1.9219 4.6069 12 6 4.0578 -1.2711 3.3275 13 6 2.0400 -0.7212 -1.2493 14 6 3.4848 -0.3524 -1.6312 15 7 2.9993 -0.3202 -3.0310 16 6 3.5498 0.8335 -3.7545 17 6 4.8444 0.4395 -4.4178 18 8 5.2670 -0.6912 -4.2989 19 7 5.5325 1.3434 -5.1429 20 6 6.7100 0.9848 -5.7467 21 1 7.0863 -0.0220 -5.6409 22 6 7.4197 1.9169 -6.4939 23 7 6.9620 3.1420 -6.6222 24 14 9.0243 1.4284 -7.3159 25 1 9.3186 0.0033 -7.0197 26 1 8.9050 1.6148 -8.7844 27 1 10.1254 2.2789 -6.7968 28 6 1.6207 -0.0473 -2.5683 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 2.2490 -1.6318 1.1525 33 1 1.9798 -1.5538 3.8323 34 1 1.6935 0.6027 4.9893 35 1 3.3306 1.1035 4.4978 36 1 3.3644 0.2505 6.8119 37 1 2.6335 -1.2806 6.2734 38 1 5.6088 -2.2716 4.4401 39 1 3.9553 -2.7659 4.8766 40 1 4.7149 -0.4522 3.0347 41 1 4.0220 -2.0126 2.5294 42 1 1.8527 -1.7948 -1.2262 43 1 3.8042 0.6194 -1.2547 44 1 4.2070 -1.1445 -1.4338 45 1 2.8379 1.1604 -4.5126 46 1 3.7337 1.6479 -3.0537 47 1 5.1947 2.2478 -5.2377 48 1 7.4572 3.7926 -7.1441 49 1 0.8561 -0.5963 -3.1182 50 1 1.3917 1.0134 -2.4661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717543295.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:40 Heat of formation + Delta-G solvation = -122.763088 kcal Electronic energy + Delta-G solvation = -29650.056679 eV Core-core repulsion = 25483.656581 eV Total energy + Delta-G solvation = -4166.400098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.70058 -41.00618 -39.78250 -39.35680 -36.42537 -35.90586 -34.81365 -33.32897 -32.51571 -31.91644 -30.57073 -27.66579 -27.11270 -26.70639 -25.55555 -24.49515 -23.23406 -21.88583 -21.21231 -21.00219 -20.39651 -19.90531 -18.36745 -17.81432 -17.60622 -17.01218 -16.92679 -16.61748 -16.53247 -16.40978 -15.94180 -15.81149 -15.64086 -15.42349 -15.00424 -14.88137 -14.66891 -14.20809 -14.09354 -14.00306 -13.69883 -13.54198 -13.40603 -13.26322 -12.99614 -12.73573 -12.68167 -12.50126 -12.43087 -12.31714 -12.13806 -11.85993 -11.83929 -11.67709 -11.65490 -11.52099 -11.44944 -10.92678 -10.43761 -10.39752 -10.13929 -10.03100 -9.62372 -8.48525 -5.97543 1.34930 1.39703 1.54305 1.60343 2.03557 2.12755 2.27143 2.76391 2.99020 3.17380 3.28770 3.44076 3.57229 3.62849 3.71189 3.78167 4.00806 4.10696 4.15994 4.21357 4.25013 4.28689 4.34040 4.41257 4.45831 4.48656 4.51277 4.52502 4.62310 4.67218 4.75332 4.78534 4.80630 4.82842 4.83108 4.99225 5.08192 5.10181 5.19595 5.25936 5.31520 5.38543 5.41815 5.54570 5.88431 6.07101 6.27939 6.55063 6.58565 7.11121 7.25129 7.54429 8.10607 8.69295 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.002156 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.655189 B =12986.486676 C =14320.150310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.155 3.845 3 H 0.062 0.938 4 N -0.711 5.711 5 C 0.516 3.484 6 O -0.584 6.584 7 C -0.103 4.103 8 C -0.135 4.135 9 C 0.062 3.938 10 O -0.408 6.408 11 C 0.059 3.941 12 C -0.145 4.145 13 C -0.096 4.096 14 C 0.010 3.990 15 N -0.481 5.481 16 C 0.023 3.977 17 C 0.442 3.558 18 O -0.618 6.618 19 N -0.577 5.577 20 C -0.332 4.332 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.271 1.271 28 C 0.015 3.985 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.415 0.585 33 H 0.129 0.871 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.052 0.948 41 H 0.101 0.899 42 H 0.122 0.878 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.108 0.892 46 H 0.073 0.927 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.109 0.891 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.060 -8.874 22.512 28.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.049 3.951 3 H 0.080 0.920 4 N -0.363 5.363 5 C 0.304 3.696 6 O -0.464 6.464 7 C -0.124 4.124 8 C -0.173 4.173 9 C -0.014 4.014 10 O -0.328 6.328 11 C -0.017 4.017 12 C -0.183 4.183 13 C -0.115 4.115 14 C -0.119 4.119 15 N -0.204 5.204 16 C -0.109 4.109 17 C 0.229 3.771 18 O -0.503 6.503 19 N -0.215 5.215 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.196 1.196 28 C -0.113 4.113 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.252 0.748 33 H 0.147 0.853 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.140 0.860 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.126 0.874 46 H 0.091 0.909 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.127 0.873 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.605 -9.111 22.144 28.047 hybrid contribution 0.681 1.120 -0.567 1.429 sum -13.924 -7.991 21.576 26.894 Atomic orbital electron populations 1.22066 0.93511 1.03273 1.02335 1.20907 0.95117 0.95902 0.83142 0.91956 1.45989 1.66658 1.14726 1.08887 1.21037 0.76360 0.86796 0.85452 1.90692 1.51964 1.18023 1.85728 1.21410 0.98935 0.99808 0.92219 1.21988 1.02422 0.97975 0.94922 1.22713 0.84161 0.98430 0.96143 1.87937 1.30087 1.60428 1.54305 1.22735 1.03205 0.90659 0.85099 1.22205 0.94172 1.01592 1.00369 1.23126 0.93619 1.02032 0.92764 1.24016 0.98054 1.00934 0.88859 1.68377 1.04382 1.35384 1.12246 1.22351 0.94787 0.93956 0.99810 1.20805 0.87725 0.85567 0.82973 1.90474 1.71839 1.22181 1.65852 1.41982 1.21195 1.12830 1.45507 1.19688 0.99468 0.98242 1.28771 0.90425 1.26070 1.02813 0.94807 0.97774 1.69680 1.41141 1.04016 1.41467 0.84859 0.77118 0.78239 0.78047 1.19763 1.19454 1.19580 1.24073 0.92036 1.01027 0.94212 0.90543 0.93683 0.90453 0.74841 0.85320 0.90145 0.93104 0.88005 0.90798 0.87910 0.90505 0.92881 0.88040 0.85969 0.92221 0.90794 0.87377 0.90932 0.77117 0.91301 0.87286 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.31 71.98 0.67 -1.53 16 2 C 0.15 2.68 2.38 44.99 0.11 2.79 16 3 H 0.06 1.46 7.41 -2.39 -0.02 1.44 16 4 N -0.71 -10.61 4.99 -442.55 -2.21 -12.82 16 5 C 0.52 9.99 7.12 87.66 0.62 10.62 16 6 O -0.58 -16.78 15.63 -3.02 -0.05 -16.83 16 7 C -0.10 -1.34 2.61 -11.42 -0.03 -1.37 16 8 C -0.13 -2.11 4.73 30.69 0.15 -1.97 16 9 C 0.06 0.76 6.84 72.01 0.49 1.26 16 10 O -0.41 -6.87 10.77 -148.98 -1.60 -8.47 16 11 C 0.06 0.67 6.84 72.01 0.49 1.16 16 12 C -0.15 -1.79 5.30 30.68 0.16 -1.63 16 13 C -0.10 -1.75 3.46 -10.15 -0.04 -1.78 16 14 C 0.01 0.28 7.53 86.36 0.65 0.93 16 15 N -0.48 -15.15 5.65 -911.65 -5.15 -20.30 16 16 C 0.02 0.81 5.28 85.56 0.45 1.26 16 17 C 0.44 21.84 7.83 87.66 0.69 22.52 16 18 O -0.62 -35.46 16.01 -3.08 -0.05 -35.51 16 19 N -0.58 -30.62 5.29 -306.98 -1.62 -32.24 16 20 C -0.33 -19.34 9.68 84.04 0.81 -18.53 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 23 N -0.92 -50.76 13.05 21.66 0.28 -50.48 16 24 Si 0.99 43.72 29.55 68.60 2.03 45.74 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 28 C 0.02 0.31 6.64 86.41 0.57 0.88 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.99 7.51 -2.39 -0.02 0.97 16 32 H 0.41 3.79 8.12 -92.71 -0.75 3.04 16 33 H 0.13 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 1.10 8.02 -2.38 -0.02 1.08 16 36 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.10 0.81 7.70 -2.39 -0.02 0.80 16 42 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.06 1.72 7.33 -2.38 -0.02 1.70 16 44 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.11 3.37 8.08 -2.38 -0.02 3.35 16 46 H 0.07 2.34 7.39 -2.39 -0.02 2.33 16 47 H 0.40 19.91 7.90 -92.71 -0.73 19.18 16 48 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 49 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 50 H 0.08 1.52 7.88 -2.39 -0.02 1.50 16 Total: -1.00 -79.33 403.84 -2.63 -81.96 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: -0.54 Total: 34.71 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 6.27 Total: 14.24 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -8.70 Total: -115.85 kcal Atomic # 8 Polarization: -59.11 SS G_CDS: -1.70 Total: -60.81 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -79.33 -2.63 -81.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717543295.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.803 kcal (2) G-P(sol) polarization free energy of solvation -79.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds