Wall clock time and date at job start Sat Apr 11 2020 05:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47006 * 2 1 4 4 N 1.46503 * 109.47062 * 239.99887 * 2 1 3 5 5 C 1.34773 * 120.00234 * 84.72736 * 4 2 1 6 6 O 1.21282 * 119.99842 * 0.27087 * 5 4 2 7 7 C 1.50693 * 120.00356 * 180.27211 * 5 4 2 8 8 C 1.53173 * 109.54647 * 299.55800 * 7 5 4 9 9 C 1.53095 * 109.16739 * 183.14898 * 8 7 5 10 10 O 1.42904 * 109.41070 * 57.60650 * 9 8 7 11 11 C 1.42905 * 114.10041 * 298.84241 * 10 9 8 12 12 C 1.53093 * 109.41233 * 61.15934 * 11 10 9 13 13 C 1.53001 * 109.47264 * 119.99982 * 2 1 3 14 14 C 1.53940 * 113.72954 * 281.86703 * 13 2 1 15 15 N 1.48191 * 86.09965 * 221.95160 * 14 13 2 16 16 C 1.46896 * 111.06736 * 137.51988 * 15 14 13 17 17 C 1.50701 * 109.47302 * 90.56915 * 16 15 14 18 18 O 1.21297 * 119.99722 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00298 * 179.97438 * 17 16 15 20 20 C 1.37088 * 120.00041 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00219 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00396 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99447 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00401 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47245 * 60.00215 * 24 22 20 26 26 H 1.48502 * 109.47325 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47202 * 300.00069 * 24 22 20 28 28 C 1.47966 * 90.79735 * 24.60354 * 15 14 13 29 29 H 1.09005 * 109.47106 * 60.01986 * 1 2 3 30 30 H 1.09000 * 109.47066 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46779 * 300.02526 * 1 2 3 32 32 H 0.97001 * 119.99344 * 264.99751 * 4 2 1 33 33 H 1.09008 * 109.53942 * 59.82008 * 7 5 4 34 34 H 1.09004 * 109.51903 * 303.05736 * 8 7 5 35 35 H 1.09006 * 109.52387 * 63.24284 * 8 7 5 36 36 H 1.08993 * 109.47937 * 297.62634 * 9 8 7 37 37 H 1.09002 * 109.48050 * 177.59076 * 9 8 7 38 38 H 1.09005 * 109.47562 * 301.18260 * 11 10 9 39 39 H 1.08995 * 109.48312 * 181.14675 * 11 10 9 40 40 H 1.09006 * 109.52146 * 182.48902 * 12 11 10 41 41 H 1.08995 * 109.52238 * 62.30058 * 12 11 10 42 42 H 1.08999 * 112.93891 * 53.42411 * 13 2 1 43 43 H 1.08992 * 113.76193 * 336.23798 * 14 13 2 44 44 H 1.09001 * 113.75780 * 107.60243 * 14 13 2 45 45 H 1.09002 * 109.47326 * 210.56798 * 16 15 14 46 46 H 1.09000 * 109.47354 * 330.56624 * 16 15 14 47 47 H 0.96999 * 119.99576 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99726 * 179.97438 * 23 22 20 49 49 H 1.08998 * 113.75546 * 221.08832 * 28 15 14 50 50 H 1.08993 * 113.76314 * 89.71576 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1418 -0.0197 -2.3585 6 8 1.8534 1.1570 -2.4130 7 6 2.6383 -0.7316 -3.5904 8 6 4.0480 -1.2739 -3.3358 9 6 4.5747 -1.9262 -4.6168 10 8 4.5631 -0.9680 -5.6770 11 6 3.2645 -0.4612 -5.9914 12 6 2.6853 0.2498 -4.7655 13 6 2.0400 -0.7212 1.2492 14 6 1.9733 0.1328 2.5283 15 7 3.3110 -0.4202 2.8460 16 6 4.2040 0.6236 3.3663 17 6 4.0865 0.6829 4.8675 18 8 3.3333 -0.0708 5.4471 19 7 4.8191 1.5725 5.5663 20 6 4.7119 1.6267 6.9319 21 1 4.0406 0.9562 7.4479 22 6 5.4668 2.5443 7.6523 23 7 6.2832 3.3605 7.0244 24 14 5.3211 2.6176 9.5131 25 1 5.7044 1.3049 10.0917 26 1 6.2234 3.6733 10.0391 27 1 3.9193 2.9335 9.8879 28 6 3.5701 -0.6730 1.4113 29 1 -0.3633 0.5135 -0.8902 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5142 0.8898 32 1 2.2490 -1.6318 -1.1525 33 1 1.9669 -1.5561 -3.8305 34 1 4.7066 -0.4549 -3.0467 35 1 4.0145 -2.0149 -2.5370 36 1 3.9386 -2.7703 -4.8828 37 1 5.5941 -2.2760 -4.4540 38 1 2.6112 -1.2864 -6.2753 39 1 3.3400 0.2441 -6.8189 40 1 1.6770 0.5986 -4.9893 41 1 3.3163 1.0996 -4.5054 42 1 1.6177 -1.7193 1.3657 43 1 1.9753 1.2063 2.3401 44 1 1.1925 -0.1770 3.2229 45 1 5.2329 0.3918 3.0912 46 1 3.9227 1.5873 2.9415 47 1 5.4217 2.1750 5.1028 48 1 6.8099 4.0013 7.5273 49 1 4.0626 -1.6253 1.2152 50 1 4.0401 0.1644 0.8957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717543296.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:44 Heat of formation + Delta-G solvation = -94.404290 kcal Electronic energy + Delta-G solvation = -29586.698578 eV Core-core repulsion = 25421.528210 eV Total energy + Delta-G solvation = -4165.170368 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.87434 -40.03167 -38.85580 -37.74366 -35.49724 -34.19975 -33.85527 -31.78648 -31.34933 -31.08005 -29.46672 -26.57732 -25.87735 -25.74343 -24.15942 -23.94449 -22.23868 -21.12559 -20.45203 -19.62433 -19.18369 -17.91671 -17.59015 -16.77220 -16.42912 -16.34494 -15.99609 -15.57647 -15.40961 -15.18704 -14.94952 -14.58365 -14.48074 -14.17255 -14.01196 -13.72719 -13.59565 -13.33436 -13.00814 -12.85826 -12.66328 -12.56775 -12.31108 -12.01854 -11.90417 -11.79639 -11.55551 -11.33110 -11.22489 -11.04945 -10.93061 -10.91530 -10.85681 -10.59521 -10.42461 -10.28124 -10.18386 -9.79765 -9.46813 -9.35562 -8.71075 -8.15246 -7.93557 -6.39094 -3.79858 2.34604 2.80821 3.21532 3.26860 3.31292 3.43997 3.88812 3.94941 4.11460 4.19637 4.22684 4.27714 4.38640 4.50561 4.53041 4.71991 4.77817 4.94719 4.97645 5.03101 5.05924 5.11181 5.14193 5.19723 5.22916 5.25650 5.34312 5.40191 5.44235 5.49667 5.54409 5.62638 5.65601 5.68487 5.72339 5.76501 5.83626 5.92558 5.98288 6.18399 6.27204 6.29786 6.58164 6.73453 7.16921 7.21574 7.57190 7.95001 8.08440 8.64975 9.20902 9.57502 10.10055 10.78763 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020112 B = 0.001901 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.861633 B =14725.834627 C =15323.761852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 H 0.088 0.912 4 N -0.722 5.722 5 C 0.519 3.481 6 O -0.537 6.537 7 C -0.109 4.109 8 C -0.148 4.148 9 C 0.062 3.938 10 O -0.382 6.382 11 C 0.061 3.939 12 C -0.136 4.136 13 C -0.126 4.126 14 C 0.023 3.977 15 N -0.449 5.449 16 C 0.010 3.990 17 C 0.446 3.554 18 O -0.576 6.576 19 N -0.567 5.567 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.005 3.995 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.400 0.600 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.051 0.949 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.070 0.930 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.057 0.943 47 H 0.391 0.609 48 H 0.272 0.728 49 H 0.087 0.913 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.742 -9.772 -26.210 28.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.106 0.894 4 N -0.373 5.373 5 C 0.305 3.695 6 O -0.413 6.413 7 C -0.131 4.131 8 C -0.186 4.186 9 C -0.014 4.014 10 O -0.301 6.301 11 C -0.016 4.016 12 C -0.174 4.174 13 C -0.145 4.145 14 C -0.106 4.106 15 N -0.171 5.171 16 C -0.122 4.122 17 C 0.231 3.769 18 O -0.459 6.459 19 N -0.204 5.204 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.124 4.124 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.234 0.766 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.116 0.884 38 H 0.069 0.931 39 H 0.116 0.884 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.122 0.878 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.075 0.925 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.105 0.895 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.079 -9.726 -25.356 28.065 hybrid contribution 0.248 0.704 0.444 0.868 sum -6.831 -9.022 -24.912 27.362 Atomic orbital electron populations 1.22134 0.94924 1.02191 1.02693 1.21064 0.94305 0.97173 0.82985 0.89383 1.46068 1.67492 1.14134 1.09577 1.20529 0.77247 0.87300 0.84450 1.90719 1.49666 1.15954 1.84985 1.21388 0.98160 0.99512 0.94022 1.22216 0.95174 1.01924 0.99303 1.22580 1.02274 0.90589 0.86005 1.87968 1.28897 1.59743 1.53478 1.22637 0.84473 0.97675 0.96840 1.22028 1.03102 0.98521 0.93790 1.23341 0.96483 1.00946 0.93764 1.23953 0.94590 0.97420 0.94680 1.68411 1.01804 1.33529 1.13310 1.22476 0.98662 0.94453 0.96607 1.19686 0.85039 0.84343 0.87790 1.90516 1.41108 1.43587 1.70727 1.41872 1.38445 1.32686 1.07428 1.19641 1.23388 1.18177 0.81589 0.88027 1.25260 0.96147 0.95981 1.00654 1.69607 1.26448 1.21669 1.36746 0.85916 0.78186 0.77910 0.82186 1.19913 1.20996 1.19944 1.23961 0.95491 1.02053 0.90866 0.92276 0.92383 0.91171 0.76635 0.88490 0.90159 0.90118 0.92921 0.88350 0.93106 0.88445 0.90136 0.90002 0.87767 0.91234 0.88759 0.89507 0.92472 0.77564 0.91864 0.89485 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.44 37.16 0.35 -1.09 16 2 C 0.15 1.41 2.29 -67.93 -0.16 1.25 16 3 H 0.09 1.04 7.49 -51.93 -0.39 0.65 16 4 N -0.72 -5.54 4.85 -53.81 -0.26 -5.80 16 5 C 0.52 4.87 7.12 -10.99 -0.08 4.79 16 6 O -0.54 -7.31 15.63 5.56 0.09 -7.23 16 7 C -0.11 -0.72 2.61 -91.59 -0.24 -0.95 16 8 C -0.15 -0.83 5.30 -26.59 -0.14 -0.98 16 9 C 0.06 0.35 6.84 37.21 0.25 0.60 16 10 O -0.38 -3.09 10.77 -35.23 -0.38 -3.47 16 11 C 0.06 0.37 6.84 37.21 0.25 0.63 16 12 C -0.14 -1.00 4.73 -26.59 -0.13 -1.13 16 13 C -0.13 -1.27 3.35 -89.68 -0.30 -1.58 16 14 C 0.02 0.32 7.42 -2.63 -0.02 0.30 16 15 N -0.45 -7.28 5.65 -239.51 -1.35 -8.64 16 16 C 0.01 0.18 5.28 -4.98 -0.03 0.16 16 17 C 0.45 10.80 7.83 -10.98 -0.09 10.72 16 18 O -0.58 -16.04 16.01 5.54 0.09 -15.95 16 19 N -0.57 -14.68 5.29 -10.96 -0.06 -14.74 16 20 C -0.30 -8.46 9.68 -14.94 -0.14 -8.60 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.92 13.05 55.50 0.72 -24.20 16 24 Si 0.93 21.34 29.55 -169.99 -5.02 16.31 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 C 0.01 0.06 7.39 -2.76 -0.02 0.04 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.40 2.07 8.12 -40.82 -0.33 1.74 16 33 H 0.10 0.45 8.14 -51.92 -0.42 0.03 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.31 7.70 -51.93 -0.40 -0.09 16 36 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.77 8.02 -51.93 -0.42 0.35 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.94 7.38 -51.93 -0.38 0.56 16 44 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 46 H 0.06 0.94 7.39 -51.93 -0.38 0.56 16 47 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 48 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 LS Contribution 404.94 15.07 6.10 6.10 Total: -1.00 -35.06 404.94 -9.10 -44.17 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -8.46 Total: 8.80 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -0.57 Total: 4.63 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.95 Total: -53.37 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.20 Total: -26.65 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.06 -9.10 -44.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717543296.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.238 kcal (2) G-P(sol) polarization free energy of solvation -35.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds