Wall clock time and date at job start Sat Apr 11 2020 05:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08990 * 109.47465 * 2 1 4 4 N 1.46502 * 109.46882 * 239.99297 * 2 1 3 5 5 C 1.34779 * 119.99584 * 85.00727 * 4 2 1 6 6 O 1.21277 * 120.00426 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99761 * 179.97438 * 5 4 2 8 8 C 1.52999 * 109.47229 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47202 * 180.02562 * 8 7 5 10 10 H 1.09000 * 110.32739 * 55.79949 * 9 8 7 11 11 C 1.54481 * 110.36922 * 178.16768 * 9 8 7 12 12 C 1.54509 * 104.05898 * 142.81214 * 11 9 8 13 13 C 1.54471 * 104.06601 * 359.97438 * 12 11 9 14 14 H 1.08999 * 110.47150 * 94.89889 * 13 12 11 15 15 C 1.50703 * 110.37461 * 217.19105 * 13 12 11 16 16 N 1.34780 * 119.99982 * 291.83493 * 15 13 12 17 17 O 1.21282 * 120.00095 * 111.82966 * 15 13 12 18 18 O 1.44419 * 110.37490 * 293.54944 * 9 8 7 19 19 C 1.53000 * 109.46697 * 119.99902 * 2 1 3 20 20 C 1.53497 * 114.20787 * 299.99699 * 19 2 1 21 21 N 1.47062 * 87.98453 * 87.71861 * 20 19 2 22 22 C 1.36943 * 136.05579 * 207.08745 * 21 20 19 23 23 H 1.08002 * 119.99788 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99622 * 180.27778 * 22 21 20 25 25 N 1.31614 * 120.00467 * 359.72375 * 24 22 21 26 26 Si 1.86801 * 119.99700 * 179.72266 * 24 22 21 27 27 H 1.48504 * 109.47306 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47021 * 119.99661 * 26 24 22 29 29 H 1.48501 * 109.47039 * 240.00078 * 26 24 22 30 30 C 1.47067 * 87.88602 * 27.34481 * 21 20 19 31 31 H 1.09010 * 109.47036 * 60.00007 * 1 2 3 32 32 H 1.08997 * 109.47848 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47365 * 300.00460 * 1 2 3 34 34 H 0.96997 * 120.00172 * 265.00348 * 4 2 1 35 35 H 1.08999 * 109.47071 * 299.99961 * 7 5 4 36 36 H 1.09001 * 109.46813 * 59.99902 * 7 5 4 37 37 H 1.09004 * 109.47323 * 300.00638 * 8 7 5 38 38 H 1.09006 * 109.46442 * 59.99974 * 8 7 5 39 39 H 1.09001 * 110.50819 * 261.45492 * 11 9 8 40 40 H 1.08995 * 110.51450 * 24.16865 * 11 9 8 41 41 H 1.09007 * 110.50929 * 241.35342 * 12 11 9 42 42 H 1.09006 * 110.51070 * 118.64623 * 12 11 9 43 43 H 0.96999 * 119.99528 * 359.97438 * 16 15 13 44 44 H 0.96999 * 119.99520 * 179.97438 * 16 15 13 45 45 H 1.09001 * 113.28445 * 166.93217 * 19 2 1 46 46 H 1.09000 * 113.46436 * 332.93489 * 20 19 2 47 47 H 1.08997 * 113.51966 * 202.51274 * 20 19 2 48 48 H 0.96995 * 120.00147 * 180.02562 * 25 24 22 49 49 H 1.08994 * 113.46653 * 87.43736 * 30 21 20 50 50 H 1.08996 * 113.46465 * 217.87717 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 7 2.0182 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8583 1.1582 -2.4118 7 6 2.6499 -0.7288 -3.5874 8 6 2.7008 0.2540 -4.7589 9 6 3.2106 -0.4674 -6.0081 10 1 2.5903 -1.3376 -6.2225 11 6 3.2268 0.4954 -7.2160 12 6 4.4986 0.0961 -7.9973 13 6 5.1007 -1.0603 -7.1686 14 1 4.7723 -2.0223 -7.5619 15 6 6.6055 -0.9796 -7.1713 16 7 7.2906 -1.2082 -8.3093 17 8 7.2002 -0.7089 -6.1495 18 8 4.5885 -0.8630 -5.8330 19 6 2.0399 -0.7212 1.2493 20 6 1.5897 -0.0845 2.5714 21 7 0.3766 -0.9126 2.4972 22 6 -0.9105 -0.8194 2.9554 23 1 -1.2182 0.0423 3.5293 24 6 -1.8178 -1.8352 2.6877 25 7 -1.4426 -2.8854 1.9887 26 14 -3.5714 -1.7116 3.3194 27 1 -3.7380 -0.4426 4.0725 28 1 -4.5136 -1.7341 2.1718 29 1 -3.8564 -2.8601 4.2166 30 6 1.1558 -1.8880 1.7197 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3635 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 2.2489 -1.6319 -1.1525 35 1 3.6491 -1.1207 -3.3978 36 1 1.9776 -1.5511 -3.8324 37 1 1.7013 0.6456 -4.9483 38 1 3.3728 1.0765 -4.5140 39 1 2.3391 0.3506 -7.8317 40 1 3.2946 1.5298 -6.8791 41 1 5.1952 0.9331 -8.0466 42 1 4.2396 -0.2461 -8.9993 43 1 6.8150 -1.4250 -9.1264 44 1 8.2592 -1.1559 -8.3111 45 1 3.1030 -0.9579 1.2064 46 1 1.3912 0.9843 2.4930 47 1 2.2337 -0.3326 3.4151 48 1 -2.0767 -3.5951 1.8014 49 1 1.6858 -2.6121 2.3384 50 1 0.5875 -2.3555 0.9157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717553502.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:53 Heat of formation + Delta-G solvation = -67.090153 kcal Electronic energy + Delta-G solvation = -29667.717697 eV Core-core repulsion = 25503.731758 eV Total energy + Delta-G solvation = -4163.985938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.66694 -39.71025 -38.79647 -38.26915 -34.37353 -34.23788 -33.58814 -32.39934 -32.13709 -30.06605 -28.72375 -27.61610 -25.39617 -24.64647 -23.99943 -22.72664 -21.54484 -21.10680 -20.89282 -19.82952 -18.43627 -18.12957 -17.34444 -17.00427 -16.74111 -16.42457 -16.04867 -15.52520 -15.13961 -14.95787 -14.81480 -14.63675 -14.47508 -14.09258 -13.78762 -13.53593 -13.40771 -13.06068 -12.56351 -12.32999 -12.25915 -12.11626 -11.88189 -11.70857 -11.31702 -11.17024 -11.13976 -11.00109 -10.94273 -10.92680 -10.72756 -10.50345 -10.39069 -10.25627 -10.16057 -10.00154 -9.84734 -9.64745 -9.46095 -9.09511 -8.71586 -8.50342 -6.79191 -5.75055 -3.05958 2.17694 2.71559 3.02751 3.40029 3.46222 3.47871 3.55481 3.65478 4.05600 4.25093 4.38575 4.48132 4.52637 4.69083 4.80120 4.87172 5.00646 5.18257 5.21937 5.32397 5.35086 5.39424 5.41158 5.44742 5.46589 5.62374 5.68279 5.72818 5.93180 6.04128 6.15736 6.19981 6.27359 6.39060 6.45388 6.51554 6.57498 6.70003 6.81368 6.84337 6.87315 7.12402 7.28562 7.33708 7.54198 7.67322 7.82269 7.97145 8.00447 8.63859 9.06461 9.72912 10.67532 11.42302 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.001932 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.694554 B =14490.877080 C =14888.622915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.175 3.825 3 H 0.074 0.926 4 N -0.719 5.719 5 C 0.511 3.489 6 O -0.551 6.551 7 C -0.141 4.141 8 C -0.095 4.095 9 C 0.071 3.929 10 H 0.076 0.924 11 C -0.150 4.150 12 C -0.144 4.144 13 C 0.055 3.945 14 H 0.095 0.905 15 C 0.521 3.479 16 N -0.854 5.854 17 O -0.517 6.517 18 O -0.338 6.338 19 C -0.161 4.161 20 C 0.126 3.874 21 N -0.604 5.604 22 C -0.210 4.210 23 H 0.080 0.920 24 C -0.007 4.007 25 N -0.918 5.918 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.292 1.292 30 C 0.158 3.842 31 H 0.026 0.974 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.398 0.602 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.401 0.599 44 H 0.405 0.595 45 H 0.069 0.931 46 H 0.041 0.959 47 H 0.034 0.966 48 H 0.251 0.749 49 H 0.022 0.978 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.904 1.446 -25.375 28.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.072 3.928 3 H 0.092 0.908 4 N -0.369 5.369 5 C 0.298 3.702 6 O -0.430 6.430 7 C -0.181 4.181 8 C -0.132 4.132 9 C 0.014 3.986 10 H 0.093 0.907 11 C -0.187 4.187 12 C -0.182 4.182 13 C -0.006 4.006 14 H 0.113 0.887 15 C 0.304 3.696 16 N -0.421 5.421 17 O -0.391 6.391 18 O -0.256 6.256 19 C -0.181 4.181 20 C -0.001 4.001 21 N -0.330 5.330 22 C -0.338 4.338 23 H 0.098 0.902 24 C -0.203 4.203 25 N -0.566 5.566 26 Si 0.738 3.262 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.219 1.219 30 C 0.032 3.968 31 H 0.045 0.955 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.232 0.768 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.229 0.771 44 H 0.236 0.764 45 H 0.087 0.913 46 H 0.059 0.941 47 H 0.052 0.948 48 H 0.062 0.938 49 H 0.040 0.960 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.644 2.374 -24.331 27.997 hybrid contribution -0.702 -0.813 -0.097 1.079 sum 12.942 1.561 -24.428 27.688 Atomic orbital electron populations 1.22151 0.93197 1.04188 1.00872 1.20535 0.95512 0.95123 0.81663 0.90791 1.46188 1.66623 1.14036 1.10074 1.20578 0.77574 0.87378 0.84703 1.90666 1.50837 1.16281 1.85193 1.21643 1.03559 0.99542 0.93319 1.21388 1.02502 0.97898 0.91459 1.23203 0.83406 0.96459 0.95560 0.90657 1.22996 0.97693 1.01419 0.96623 1.22907 0.97935 0.98037 0.99304 1.22804 0.91474 1.00006 0.86344 0.88748 1.20296 0.89475 0.76283 0.83543 1.43750 1.11292 1.75098 1.11913 1.90811 1.70493 1.45632 1.32144 1.89311 1.24786 1.88993 1.22524 1.23372 0.98365 1.01487 0.94854 1.22348 0.88945 0.95706 0.93107 1.45666 1.04253 1.20080 1.63043 1.18920 0.83197 1.03589 1.28067 0.90247 1.24723 0.98066 0.96564 1.00958 1.69814 1.33889 1.09524 1.43347 0.86108 0.84787 0.77223 0.78050 1.20520 1.21776 1.21914 1.22203 0.89395 0.90685 0.94515 0.95510 0.90558 0.89774 0.76813 0.88352 0.89108 0.89567 0.90139 0.89862 0.89809 0.90195 0.89609 0.77073 0.76356 0.91294 0.94072 0.94813 0.93848 0.96018 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.07 37.16 0.30 -2.83 16 2 C 0.18 3.25 2.76 -67.93 -0.19 3.07 16 3 H 0.07 1.44 7.58 -51.93 -0.39 1.05 16 4 N -0.72 -11.41 5.08 -53.81 -0.27 -11.68 16 5 C 0.51 8.10 7.79 -10.98 -0.09 8.01 16 6 O -0.55 -10.70 15.64 5.56 0.09 -10.61 16 7 C -0.14 -1.64 5.61 -27.88 -0.16 -1.80 16 8 C -0.09 -1.03 4.14 -26.73 -0.11 -1.14 16 9 C 0.07 0.61 3.28 -25.95 -0.09 0.52 16 10 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 11 C -0.15 -0.95 6.63 -25.16 -0.17 -1.12 16 12 C -0.14 -0.74 6.62 -25.17 -0.17 -0.90 16 13 C 0.06 0.41 3.71 -27.11 -0.10 0.30 16 14 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 15 C 0.52 4.63 7.34 -10.98 -0.08 4.55 16 16 N -0.85 -3.37 8.87 31.22 0.28 -3.09 16 17 O -0.52 -7.53 17.39 -13.62 -0.24 -7.76 16 18 O -0.34 -3.73 10.26 -54.41 -0.56 -4.28 16 19 C -0.16 -2.98 4.24 -89.97 -0.38 -3.37 16 20 C 0.13 2.57 7.85 -8.51 -0.07 2.51 16 21 N -0.60 -14.90 2.18 -184.61 -0.40 -15.30 16 22 C -0.21 -5.72 9.60 -15.06 -0.14 -5.87 16 23 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 24 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 25 N -0.92 -26.34 11.50 55.49 0.64 -25.70 16 26 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 C 0.16 3.55 6.41 -8.37 -0.05 3.50 16 31 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.08 1.83 6.33 -51.93 -0.33 1.50 16 33 H 0.08 1.98 5.95 -51.93 -0.31 1.67 16 34 H 0.40 5.48 8.60 -40.82 -0.35 5.12 16 35 H 0.10 1.13 7.91 -51.93 -0.41 0.72 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 38 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.60 7.87 -51.93 -0.41 0.19 16 41 H 0.08 0.46 7.86 -51.93 -0.41 0.05 16 42 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.40 0.19 8.83 -40.82 -0.36 -0.17 16 44 H 0.41 1.33 8.93 -40.82 -0.36 0.97 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.04 0.82 8.12 -51.93 -0.42 0.40 16 47 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.08 1.87 5.72 -51.93 -0.30 1.58 16 LS Contribution 400.69 15.07 6.04 6.04 Total: -1.00 -36.56 400.69 -9.28 -45.85 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -8.25 Total: 4.40 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -1.58 Total: 5.15 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.24 Total: -55.78 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.71 Total: -22.66 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.56 -9.28 -45.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717553502.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.244 kcal (2) G-P(sol) polarization free energy of solvation -36.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds