Wall clock time and date at job start Sat Apr 11 2020 05:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08990 * 109.47465 * 2 1 4 4 N 1.46502 * 109.46882 * 239.99297 * 2 1 3 5 5 C 1.34779 * 119.99584 * 85.00727 * 4 2 1 6 6 O 1.21277 * 120.00426 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99761 * 179.97438 * 5 4 2 8 8 C 1.52999 * 109.47229 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47202 * 180.02562 * 8 7 5 10 10 H 1.09000 * 110.32739 * 55.79949 * 9 8 7 11 11 C 1.54481 * 110.36922 * 178.16768 * 9 8 7 12 12 C 1.54509 * 104.05898 * 142.81214 * 11 9 8 13 13 C 1.54471 * 104.06601 * 359.97438 * 12 11 9 14 14 H 1.08999 * 110.47150 * 94.89889 * 13 12 11 15 15 C 1.50703 * 110.37461 * 217.19105 * 13 12 11 16 16 N 1.34780 * 119.99982 * 291.83493 * 15 13 12 17 17 O 1.21282 * 120.00095 * 111.82966 * 15 13 12 18 18 O 1.44419 * 110.37490 * 293.54944 * 9 8 7 19 19 C 1.53000 * 109.46697 * 119.99902 * 2 1 3 20 20 C 1.53497 * 114.20787 * 299.99699 * 19 2 1 21 21 N 1.47062 * 87.98453 * 87.71861 * 20 19 2 22 22 C 1.36943 * 136.05579 * 207.08745 * 21 20 19 23 23 H 1.08002 * 119.99788 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99622 * 180.27778 * 22 21 20 25 25 N 1.31614 * 120.00467 * 359.72375 * 24 22 21 26 26 Si 1.86801 * 119.99700 * 179.72266 * 24 22 21 27 27 H 1.48504 * 109.47306 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47021 * 119.99661 * 26 24 22 29 29 H 1.48501 * 109.47039 * 240.00078 * 26 24 22 30 30 C 1.47067 * 87.88602 * 27.34481 * 21 20 19 31 31 H 1.09010 * 109.47036 * 60.00007 * 1 2 3 32 32 H 1.08997 * 109.47848 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47365 * 300.00460 * 1 2 3 34 34 H 0.96997 * 120.00172 * 265.00348 * 4 2 1 35 35 H 1.08999 * 109.47071 * 299.99961 * 7 5 4 36 36 H 1.09001 * 109.46813 * 59.99902 * 7 5 4 37 37 H 1.09004 * 109.47323 * 300.00638 * 8 7 5 38 38 H 1.09006 * 109.46442 * 59.99974 * 8 7 5 39 39 H 1.09001 * 110.50819 * 261.45492 * 11 9 8 40 40 H 1.08995 * 110.51450 * 24.16865 * 11 9 8 41 41 H 1.09007 * 110.50929 * 241.35342 * 12 11 9 42 42 H 1.09006 * 110.51070 * 118.64623 * 12 11 9 43 43 H 0.96999 * 119.99528 * 359.97438 * 16 15 13 44 44 H 0.96999 * 119.99520 * 179.97438 * 16 15 13 45 45 H 1.09001 * 113.28445 * 166.93217 * 19 2 1 46 46 H 1.09000 * 113.46436 * 332.93489 * 20 19 2 47 47 H 1.08997 * 113.51966 * 202.51274 * 20 19 2 48 48 H 0.96995 * 120.00147 * 180.02562 * 25 24 22 49 49 H 1.08994 * 113.46653 * 87.43736 * 30 21 20 50 50 H 1.08996 * 113.46465 * 217.87717 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 7 2.0182 -0.6908 -1.1961 5 6 2.1470 -0.0184 -2.3571 6 8 1.8583 1.1582 -2.4118 7 6 2.6499 -0.7288 -3.5874 8 6 2.7008 0.2540 -4.7589 9 6 3.2106 -0.4674 -6.0081 10 1 2.5903 -1.3376 -6.2225 11 6 3.2268 0.4954 -7.2160 12 6 4.4986 0.0961 -7.9973 13 6 5.1007 -1.0603 -7.1686 14 1 4.7723 -2.0223 -7.5619 15 6 6.6055 -0.9796 -7.1713 16 7 7.2906 -1.2082 -8.3093 17 8 7.2002 -0.7089 -6.1495 18 8 4.5885 -0.8630 -5.8330 19 6 2.0399 -0.7212 1.2493 20 6 1.5897 -0.0845 2.5714 21 7 0.3766 -0.9126 2.4972 22 6 -0.9105 -0.8194 2.9554 23 1 -1.2182 0.0423 3.5293 24 6 -1.8178 -1.8352 2.6877 25 7 -1.4426 -2.8854 1.9887 26 14 -3.5714 -1.7116 3.3194 27 1 -3.7380 -0.4426 4.0725 28 1 -4.5136 -1.7341 2.1718 29 1 -3.8564 -2.8601 4.2166 30 6 1.1558 -1.8880 1.7197 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3635 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 2.2489 -1.6319 -1.1525 35 1 3.6491 -1.1207 -3.3978 36 1 1.9776 -1.5511 -3.8324 37 1 1.7013 0.6456 -4.9483 38 1 3.3728 1.0765 -4.5140 39 1 2.3391 0.3506 -7.8317 40 1 3.2946 1.5298 -6.8791 41 1 5.1952 0.9331 -8.0466 42 1 4.2396 -0.2461 -8.9993 43 1 6.8150 -1.4250 -9.1264 44 1 8.2592 -1.1559 -8.3111 45 1 3.1030 -0.9579 1.2064 46 1 1.3912 0.9843 2.4930 47 1 2.2337 -0.3326 3.4151 48 1 -2.0767 -3.5951 1.8014 49 1 1.6858 -2.6121 2.3384 50 1 0.5875 -2.3555 0.9157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717553502.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:52 Heat of formation + Delta-G solvation = -94.562934 kcal Electronic energy + Delta-G solvation = -29668.909006 eV Core-core repulsion = 25503.731758 eV Total energy + Delta-G solvation = -4165.177248 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.35814 -41.10317 -39.98730 -39.33611 -35.85554 -34.89117 -34.47108 -34.13017 -32.93083 -31.43033 -29.74865 -29.44462 -26.46169 -26.32411 -25.62426 -23.65401 -22.78476 -21.97976 -21.46486 -21.14229 -20.05147 -18.68304 -18.64884 -18.00317 -17.83412 -17.37880 -17.02398 -16.85588 -16.76713 -16.14666 -15.96145 -15.73831 -15.62484 -15.28352 -14.80211 -14.58839 -14.47935 -14.30978 -14.16548 -13.68865 -13.49363 -13.03041 -12.95165 -12.91001 -12.76805 -12.69262 -12.60176 -12.54736 -12.34778 -12.02908 -11.95199 -11.89359 -11.69847 -11.62632 -11.47812 -11.05515 -10.99098 -10.80617 -10.70695 -10.63822 -10.62624 -9.95954 -8.77388 -7.84536 -5.14724 1.45983 1.47095 1.55231 1.55812 1.74992 2.21818 2.28997 2.50110 3.10790 3.37184 3.51876 3.57847 3.71845 3.76941 3.85532 3.95000 3.97090 4.00675 4.16153 4.23275 4.34034 4.41532 4.47833 4.56840 4.63741 4.70624 4.73146 4.80382 4.86697 4.90003 4.93408 5.03442 5.04946 5.09560 5.13027 5.15324 5.19122 5.29808 5.32485 5.54188 5.59131 5.71263 5.78922 5.80950 5.93750 6.00723 6.46371 6.69185 6.98590 7.33398 7.36536 7.66818 8.68212 9.32500 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022382 B = 0.001932 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.694554 B =14490.877080 C =14888.622915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.184 3.816 3 H 0.070 0.930 4 N -0.714 5.714 5 C 0.508 3.492 6 O -0.590 6.590 7 C -0.130 4.130 8 C -0.093 4.093 9 C 0.072 3.928 10 H 0.099 0.901 11 C -0.150 4.150 12 C -0.135 4.135 13 C 0.050 3.950 14 H 0.128 0.872 15 C 0.515 3.485 16 N -0.828 5.828 17 O -0.587 6.587 18 O -0.377 6.377 19 C -0.130 4.130 20 C 0.123 3.877 21 N -0.630 5.630 22 C -0.214 4.214 23 H 0.078 0.922 24 C -0.060 4.060 25 N -0.944 5.944 26 Si 0.965 3.035 27 H -0.270 1.270 28 H -0.295 1.295 29 H -0.295 1.295 30 C 0.158 3.842 31 H 0.021 0.979 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.411 0.589 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.108 0.892 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.126 0.874 43 H 0.421 0.579 44 H 0.410 0.590 45 H 0.104 0.896 46 H 0.046 0.954 47 H 0.052 0.948 48 H 0.246 0.754 49 H 0.017 0.983 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.489 0.932 -27.655 31.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.079 3.921 3 H 0.088 0.912 4 N -0.364 5.364 5 C 0.296 3.704 6 O -0.470 6.470 7 C -0.169 4.169 8 C -0.131 4.131 9 C 0.015 3.985 10 H 0.117 0.883 11 C -0.187 4.187 12 C -0.173 4.173 13 C -0.011 4.011 14 H 0.145 0.855 15 C 0.300 3.700 16 N -0.394 5.394 17 O -0.467 6.467 18 O -0.296 6.296 19 C -0.150 4.150 20 C -0.003 4.003 21 N -0.356 5.356 22 C -0.342 4.342 23 H 0.095 0.905 24 C -0.253 4.253 25 N -0.593 5.593 26 Si 0.795 3.205 27 H -0.195 1.195 28 H -0.222 1.222 29 H -0.222 1.222 30 C 0.032 3.968 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.247 0.753 35 H 0.122 0.878 36 H 0.135 0.865 37 H 0.103 0.897 38 H 0.071 0.929 39 H 0.126 0.874 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.144 0.856 43 H 0.253 0.747 44 H 0.242 0.758 45 H 0.122 0.878 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.055 0.945 49 H 0.035 0.965 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.259 1.845 -26.678 30.306 hybrid contribution -0.831 -0.613 0.563 1.177 sum 13.428 1.232 -26.115 29.391 Atomic orbital electron populations 1.21900 0.95446 1.01781 0.99402 1.20253 0.93446 0.95366 0.83006 0.91155 1.46081 1.66323 1.14627 1.09418 1.21344 0.76509 0.87020 0.85490 1.90649 1.52472 1.18140 1.85782 1.21649 1.04059 0.99889 0.91329 1.21348 1.01909 0.97248 0.92590 1.23256 0.82891 0.97512 0.94836 0.88344 1.23019 0.99464 1.00006 0.96259 1.22931 0.96734 0.96932 1.00683 1.23109 0.90213 1.02376 0.85379 0.85464 1.20767 0.90448 0.75303 0.83521 1.43562 1.11644 1.72752 1.11464 1.90778 1.71824 1.49280 1.34773 1.89273 1.25914 1.89344 1.25042 1.23139 0.99475 0.98587 0.93801 1.22535 0.87485 0.95685 0.94568 1.45917 1.04701 1.21649 1.63337 1.19159 0.84744 1.03221 1.27059 0.90463 1.25394 1.01314 0.96718 1.01877 1.69964 1.34562 1.10033 1.44747 0.85194 0.80825 0.77250 0.77214 1.19461 1.22210 1.22243 1.22157 0.89569 0.91401 0.93641 0.95990 0.93239 0.92108 0.75325 0.87798 0.86527 0.89722 0.92873 0.87354 0.91408 0.91264 0.85604 0.74659 0.75801 0.87776 0.93522 0.93083 0.94524 0.96547 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.54 8.07 71.98 0.58 -4.96 16 2 C 0.18 6.73 2.76 44.99 0.12 6.85 16 3 H 0.07 2.70 7.58 -2.39 -0.02 2.68 16 4 N -0.71 -21.97 5.08 -442.55 -2.25 -24.22 16 5 C 0.51 15.80 7.79 87.66 0.68 16.48 16 6 O -0.59 -23.04 15.64 -3.02 -0.05 -23.08 16 7 C -0.13 -2.87 5.61 29.85 0.17 -2.70 16 8 C -0.09 -1.98 4.14 30.59 0.13 -1.85 16 9 C 0.07 1.10 3.28 31.10 0.10 1.20 16 10 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 11 C -0.15 -1.57 6.63 31.61 0.21 -1.36 16 12 C -0.13 -0.99 6.62 31.61 0.21 -0.78 16 13 C 0.05 0.62 3.71 30.35 0.11 0.73 16 14 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 15 C 0.52 8.63 7.34 87.66 0.64 9.27 16 16 N -0.83 -4.82 8.87 -173.52 -1.54 -6.36 16 17 O -0.59 -17.54 17.39 15.30 0.27 -17.27 16 18 O -0.38 -7.89 10.26 -130.64 -1.34 -9.23 16 19 C -0.13 -4.64 4.24 -10.37 -0.04 -4.69 16 20 C 0.12 4.88 7.85 83.18 0.65 5.53 16 21 N -0.63 -31.10 2.18 -737.98 -1.61 -32.71 16 22 C -0.21 -11.72 9.60 84.03 0.81 -10.91 16 23 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 24 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 25 N -0.94 -55.20 11.50 21.65 0.25 -54.95 16 26 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 27 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 28 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 29 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 30 C 0.16 7.08 6.41 83.27 0.53 7.61 16 31 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.05 2.42 6.33 -2.39 -0.02 2.41 16 33 H 0.06 2.91 5.95 -2.39 -0.01 2.90 16 34 H 0.41 10.69 8.60 -92.71 -0.80 9.89 16 35 H 0.10 2.25 7.91 -2.39 -0.02 2.23 16 36 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.08 1.79 8.10 -2.38 -0.02 1.77 16 38 H 0.05 1.40 8.10 -2.38 -0.02 1.38 16 39 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.07 0.93 7.87 -2.39 -0.02 0.91 16 41 H 0.07 0.67 7.86 -2.38 -0.02 0.65 16 42 H 0.13 -0.08 8.14 -2.38 -0.02 -0.10 16 43 H 0.42 -0.99 8.83 -92.71 -0.82 -1.81 16 44 H 0.41 2.05 8.93 -92.71 -0.83 1.22 16 45 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 46 H 0.05 1.80 8.12 -2.39 -0.02 1.78 16 47 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.25 14.09 8.31 -92.71 -0.77 13.31 16 49 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.05 2.65 5.72 -2.39 -0.01 2.64 16 Total: -1.00 -83.41 400.69 -0.33 -83.75 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -1.47 Total: 18.59 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: 5.38 Total: 17.56 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -5.15 Total: -118.23 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -1.12 Total: -49.58 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -83.41 -0.33 -83.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717553502.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.815 kcal (2) G-P(sol) polarization free energy of solvation -83.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds