Wall clock time and date at job start Sat Apr 11 2020 05:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47222 * 2 1 4 4 N 1.46500 * 109.46955 * 239.99346 * 2 1 3 5 5 C 1.36936 * 119.99691 * 85.00258 * 4 2 1 6 6 H 1.08001 * 120.00138 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00322 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00318 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99624 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47206 * 90.00224 * 9 7 5 11 11 H 1.48504 * 109.47195 * 210.00300 * 9 7 5 12 12 H 1.48499 * 109.47415 * 330.00226 * 9 7 5 13 13 C 1.53004 * 109.47008 * 119.99754 * 2 1 3 14 14 H 1.08999 * 109.51518 * 299.89768 * 13 2 1 15 15 C 1.53295 * 109.55377 * 179.76917 * 13 2 1 16 16 N 1.47151 * 108.38744 * 187.74686 * 15 13 2 17 17 C 1.34770 * 120.98286 * 230.80800 * 16 15 13 18 18 O 1.21283 * 120.00276 * 359.72507 * 17 16 15 19 19 C 1.50705 * 119.99787 * 179.71529 * 17 16 15 20 20 N 1.46505 * 109.46835 * 180.02562 * 19 17 16 21 21 C 1.46494 * 119.99930 * 90.00607 * 20 19 17 22 22 C 1.34779 * 120.00190 * 270.00157 * 20 19 17 23 23 O 1.21285 * 119.99971 * 0.02562 * 22 20 19 24 24 C 1.50696 * 120.00189 * 180.02562 * 22 20 19 25 25 C 1.52998 * 117.49759 * 248.74538 * 24 22 20 26 26 C 1.53002 * 117.49774 * 180.08518 * 24 22 20 27 27 C 1.47156 * 118.03191 * 50.53693 * 16 15 13 28 28 C 1.53292 * 108.38567 * 309.46391 * 27 16 15 29 29 O 1.42959 * 109.51248 * 60.00066 * 13 2 1 30 30 H 1.09005 * 109.47196 * 299.99746 * 1 2 3 31 31 H 1.08995 * 109.47700 * 60.00374 * 1 2 3 32 32 H 1.09003 * 109.47370 * 180.02562 * 1 2 3 33 33 H 0.96998 * 120.00532 * 265.00291 * 4 2 1 34 34 H 0.96995 * 120.00052 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.68244 * 68.02344 * 15 13 2 36 36 H 1.09000 * 109.68430 * 307.47229 * 15 13 2 37 37 H 1.09002 * 109.47241 * 300.00441 * 19 17 16 38 38 H 1.09001 * 109.47041 * 60.01163 * 19 17 16 39 39 H 1.09001 * 109.47637 * 90.00058 * 21 20 19 40 40 H 1.09008 * 109.47398 * 209.99858 * 21 20 19 41 41 H 1.09002 * 109.47442 * 329.99800 * 21 20 19 42 42 H 1.08998 * 115.55158 * 34.41680 * 24 22 20 43 43 H 1.08999 * 117.49884 * 0.02562 * 25 24 22 44 44 H 1.09000 * 117.49674 * 145.01787 * 25 24 22 45 45 H 1.08993 * 117.49814 * 214.97712 * 26 24 22 46 46 H 1.08998 * 117.49717 * 359.97438 * 26 24 22 47 47 H 1.08995 * 109.67998 * 69.19035 * 27 16 15 48 48 H 1.09002 * 109.67911 * 189.70254 * 27 16 15 49 49 H 1.08999 * 109.50966 * 172.22668 * 28 27 16 50 50 H 1.08998 * 109.51169 * 292.32927 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6908 -1.1961 5 6 2.1491 -0.0077 -2.3757 6 1 1.8927 1.0403 -2.4242 7 6 2.6112 -0.6622 -3.5092 8 7 2.7365 -0.0058 -4.6432 9 14 3.0554 -2.4747 -3.4253 10 1 1.8580 -3.2931 -3.7440 11 1 4.1305 -2.7669 -4.4072 12 1 3.5310 -2.8050 -2.0578 13 6 2.0400 -0.7212 1.2493 14 1 1.6785 -0.2068 2.1397 15 6 3.5729 -0.7274 1.2483 16 7 4.0344 -1.5825 2.3534 17 6 4.9484 -1.1389 3.2388 18 8 5.4070 -0.0216 3.1287 19 6 5.4005 -2.0313 4.3660 20 7 6.3891 -1.3230 5.1830 21 6 5.9524 -0.5151 6.3244 22 6 7.7002 -1.4148 4.8847 23 8 8.0617 -2.0834 3.9395 24 6 8.7171 -0.6868 5.7255 25 6 9.4540 0.4894 5.0818 26 6 10.1894 -0.8292 5.3343 27 6 3.4637 -2.9342 2.4666 28 6 1.9361 -2.8206 2.4082 29 8 1.5639 -2.0692 1.2502 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 2.2490 -1.6319 -1.1525 34 1 3.0597 -0.4631 -5.4351 35 1 3.9442 0.2877 1.3900 36 1 3.9379 -1.1234 0.3007 37 1 4.5434 -2.2987 4.9839 38 1 5.8491 -2.9360 3.9556 39 1 5.9261 -1.1357 7.2201 40 1 6.6497 0.3093 6.4740 41 1 4.9566 -0.1176 6.1284 42 1 8.4833 -0.6137 6.7876 43 1 9.2030 0.7369 4.0504 44 1 9.7054 1.3361 5.7206 45 1 10.9242 -0.8494 6.1390 46 1 10.4225 -1.4498 4.4691 47 1 3.8177 -3.5523 1.6416 48 1 3.7632 -3.3809 3.4147 49 1 1.4989 -3.8174 2.3515 50 1 1.5742 -2.3146 3.3033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717614041.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:56 Heat of formation + Delta-G solvation = -52.658604 kcal Electronic energy + Delta-G solvation = -30926.040075 eV Core-core repulsion = 26762.679936 eV Total energy + Delta-G solvation = -4163.360140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.81555 -39.96639 -38.44611 -36.51180 -35.69700 -35.62544 -34.62967 -32.32030 -30.71617 -29.71900 -28.92243 -27.49207 -26.85753 -24.53853 -23.71515 -23.30998 -22.72756 -22.19592 -19.88618 -19.68593 -18.94263 -17.91865 -17.79380 -17.46312 -16.80468 -16.27403 -15.82898 -15.67892 -15.23380 -15.08475 -14.83486 -14.55567 -14.32901 -14.31572 -13.76644 -13.46255 -13.42990 -13.25614 -12.94819 -12.90089 -12.61835 -12.45629 -12.22619 -12.16582 -11.97540 -11.83570 -11.65157 -11.31131 -10.93611 -10.91752 -10.84448 -10.82677 -10.63489 -10.35803 -10.13656 -10.08305 -9.97534 -9.96088 -9.53426 -8.96495 -8.92761 -8.49690 -7.22242 -5.72983 -3.07922 2.15772 2.45733 2.51734 2.96769 3.42562 3.46919 3.49992 3.56431 3.81540 4.13421 4.29107 4.46134 4.57266 4.64070 4.65302 4.67232 4.72102 4.76560 4.85653 4.95814 4.98009 5.12884 5.16499 5.21685 5.31303 5.31705 5.33820 5.41178 5.54576 5.57087 5.61664 5.66363 5.67182 5.83436 5.85219 5.98851 6.12259 6.23163 6.30487 6.42169 6.48130 6.71406 6.97610 7.04764 7.27529 7.30736 7.87582 8.03498 8.07624 8.46344 9.25735 9.97872 10.18822 11.45376 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013761 B = 0.002956 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.274134 B = 9470.220562 C =10313.962365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.188 3.812 3 H 0.068 0.932 4 N -0.742 5.742 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.934 5.934 9 Si 0.884 3.116 10 H -0.284 1.284 11 H -0.293 1.293 12 H -0.277 1.277 13 C 0.076 3.924 14 H 0.059 0.941 15 C 0.085 3.915 16 N -0.613 5.613 17 C 0.498 3.502 18 O -0.529 6.529 19 C 0.098 3.902 20 N -0.599 5.599 21 C 0.083 3.917 22 C 0.550 3.450 23 O -0.534 6.534 24 C -0.194 4.194 25 C -0.149 4.149 26 C -0.149 4.149 27 C 0.069 3.931 28 C 0.048 3.952 29 O -0.363 6.363 30 H 0.036 0.964 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.367 0.633 34 H 0.259 0.741 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.124 0.876 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.082 0.918 48 H 0.088 0.912 49 H 0.104 0.896 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.708 -4.743 28.848 29.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.078 3.922 3 H 0.086 0.914 4 N -0.386 5.386 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.582 5.582 9 Si 0.714 3.286 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.203 1.203 13 C 0.017 3.983 14 H 0.077 0.923 15 C -0.037 4.037 16 N -0.348 5.348 17 C 0.285 3.715 18 O -0.405 6.405 19 C -0.028 4.028 20 N -0.332 5.332 21 C -0.060 4.060 22 C 0.338 3.662 23 O -0.410 6.410 24 C -0.215 4.215 25 C -0.186 4.186 26 C -0.186 4.186 27 C -0.054 4.054 28 C -0.030 4.030 29 O -0.281 6.281 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.201 0.799 34 H 0.069 0.931 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.125 0.875 38 H 0.131 0.869 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.142 0.858 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.126 0.874 47 H 0.100 0.900 48 H 0.106 0.894 49 H 0.122 0.878 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.068 -4.385 27.959 28.944 hybrid contribution 0.228 -1.281 0.190 1.315 sum 6.296 -5.666 28.149 29.396 Atomic orbital electron populations 1.22317 0.97966 1.01584 1.00176 1.20232 0.92956 0.94888 0.84100 0.91381 1.42726 1.79329 1.09779 1.06770 1.19068 1.36966 0.95542 0.85618 0.89181 1.24640 1.01424 0.97406 0.95538 1.69697 1.52694 1.35569 1.00231 0.86559 0.78043 0.87000 0.76987 1.21110 1.21934 1.20304 1.22981 0.92210 0.83252 0.99888 0.92261 1.22424 0.94817 0.96849 0.89576 1.48238 1.41939 1.15561 1.29108 1.21090 0.78911 0.88237 0.83298 1.90702 1.55100 1.20497 1.74187 1.21337 0.93341 0.95788 0.92365 1.47295 1.05415 1.50139 1.30300 1.21815 1.01725 0.95138 0.87285 1.19726 0.82184 0.80314 0.83936 1.90713 1.79784 1.41092 1.29443 1.22147 0.93975 1.05256 1.00097 1.22970 1.01530 0.91604 1.02504 1.22984 0.91499 1.00103 1.04033 1.22512 0.95514 0.84139 1.03278 1.22899 0.92829 0.97630 0.89653 1.88077 1.75235 1.23905 1.40885 0.94546 0.92238 0.92644 0.79946 0.93107 0.88262 0.89090 0.87516 0.86865 0.92324 0.90419 0.90933 0.85792 0.87955 0.87668 0.87864 0.87408 0.90015 0.89361 0.87805 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.35 37.16 0.35 -2.49 16 2 C 0.19 3.60 2.74 -67.93 -0.19 3.42 16 3 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 4 N -0.74 -17.51 4.09 -53.43 -0.22 -17.73 16 5 C -0.24 -6.81 10.41 -15.06 -0.16 -6.97 16 6 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 7 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 8 N -0.93 -29.70 13.97 55.49 0.78 -28.93 16 9 Si 0.88 22.75 27.73 -169.99 -4.71 18.04 16 10 H -0.28 -7.29 7.11 56.52 0.40 -6.88 16 11 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 12 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16 13 C 0.08 1.21 2.53 -26.58 -0.07 1.15 16 14 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 15 C 0.09 1.45 5.87 -3.53 -0.02 1.43 16 16 N -0.61 -8.60 3.02 -172.27 -0.52 -9.12 16 17 C 0.50 7.16 7.78 -10.99 -0.09 7.07 16 18 O -0.53 -9.64 15.90 5.56 0.09 -9.55 16 19 C 0.10 1.00 4.26 -5.19 -0.02 0.98 16 20 N -0.60 -6.24 2.36 -182.95 -0.43 -6.67 16 21 C 0.08 0.55 10.01 59.84 0.60 1.15 16 22 C 0.55 6.86 7.46 -10.99 -0.08 6.78 16 23 O -0.53 -8.82 15.84 5.55 0.09 -8.73 16 24 C -0.19 -1.71 4.79 -91.77 -0.44 -2.15 16 25 C -0.15 -1.27 10.24 -26.69 -0.27 -1.55 16 26 C -0.15 -1.25 10.05 -26.69 -0.27 -1.51 16 27 C 0.07 0.72 6.54 -3.53 -0.02 0.70 16 28 C 0.05 0.50 6.99 37.31 0.26 0.77 16 29 O -0.36 -5.61 9.22 -35.23 -0.32 -5.93 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.05 1.00 7.68 -51.93 -0.40 0.60 16 33 H 0.37 8.77 5.06 -40.82 -0.21 8.56 16 34 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 35 H 0.10 1.80 7.08 -51.93 -0.37 1.43 16 36 H 0.09 1.82 7.26 -51.93 -0.38 1.45 16 37 H 0.11 0.67 7.59 -51.93 -0.39 0.27 16 38 H 0.11 1.19 7.29 -51.93 -0.38 0.81 16 39 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.08 0.47 6.64 -51.92 -0.35 0.12 16 41 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 42 H 0.12 0.73 7.27 -51.93 -0.38 0.35 16 43 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.11 1.11 7.67 -51.93 -0.40 0.72 16 47 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.09 0.59 6.05 -51.93 -0.31 0.27 16 49 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 400.90 15.07 6.04 6.04 Total: -1.00 -37.84 400.90 -7.95 -45.78 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -8.22 Total: 7.97 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -0.51 Total: 8.83 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: -0.40 Total: -62.45 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.15 Total: -24.22 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.71 Total: 18.04 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.84 -7.95 -45.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717614041.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.877 kcal (2) G-P(sol) polarization free energy of solvation -37.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds