Wall clock time and date at job start Sat Apr 11 2020 05:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47222 * 2 1 4 4 N 1.46500 * 109.46955 * 239.99346 * 2 1 3 5 5 C 1.36936 * 119.99691 * 85.00258 * 4 2 1 6 6 H 1.08001 * 120.00138 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00322 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00318 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99624 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47206 * 90.00224 * 9 7 5 11 11 H 1.48504 * 109.47195 * 210.00300 * 9 7 5 12 12 H 1.48499 * 109.47415 * 330.00226 * 9 7 5 13 13 C 1.53004 * 109.47008 * 119.99754 * 2 1 3 14 14 H 1.08999 * 109.51518 * 299.89768 * 13 2 1 15 15 C 1.53295 * 109.55377 * 179.76917 * 13 2 1 16 16 N 1.47151 * 108.38744 * 187.74686 * 15 13 2 17 17 C 1.34770 * 120.98286 * 230.80800 * 16 15 13 18 18 O 1.21283 * 120.00276 * 359.72507 * 17 16 15 19 19 C 1.50705 * 119.99787 * 179.71529 * 17 16 15 20 20 N 1.46505 * 109.46835 * 180.02562 * 19 17 16 21 21 C 1.46494 * 119.99930 * 90.00607 * 20 19 17 22 22 C 1.34779 * 120.00190 * 270.00157 * 20 19 17 23 23 O 1.21285 * 119.99971 * 0.02562 * 22 20 19 24 24 C 1.50696 * 120.00189 * 180.02562 * 22 20 19 25 25 C 1.52998 * 117.49759 * 248.74538 * 24 22 20 26 26 C 1.53002 * 117.49774 * 180.08518 * 24 22 20 27 27 C 1.47156 * 118.03191 * 50.53693 * 16 15 13 28 28 C 1.53292 * 108.38567 * 309.46391 * 27 16 15 29 29 O 1.42959 * 109.51248 * 60.00066 * 13 2 1 30 30 H 1.09005 * 109.47196 * 299.99746 * 1 2 3 31 31 H 1.08995 * 109.47700 * 60.00374 * 1 2 3 32 32 H 1.09003 * 109.47370 * 180.02562 * 1 2 3 33 33 H 0.96998 * 120.00532 * 265.00291 * 4 2 1 34 34 H 0.96995 * 120.00052 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.68244 * 68.02344 * 15 13 2 36 36 H 1.09000 * 109.68430 * 307.47229 * 15 13 2 37 37 H 1.09002 * 109.47241 * 300.00441 * 19 17 16 38 38 H 1.09001 * 109.47041 * 60.01163 * 19 17 16 39 39 H 1.09001 * 109.47637 * 90.00058 * 21 20 19 40 40 H 1.09008 * 109.47398 * 209.99858 * 21 20 19 41 41 H 1.09002 * 109.47442 * 329.99800 * 21 20 19 42 42 H 1.08998 * 115.55158 * 34.41680 * 24 22 20 43 43 H 1.08999 * 117.49884 * 0.02562 * 25 24 22 44 44 H 1.09000 * 117.49674 * 145.01787 * 25 24 22 45 45 H 1.08993 * 117.49814 * 214.97712 * 26 24 22 46 46 H 1.08998 * 117.49717 * 359.97438 * 26 24 22 47 47 H 1.08995 * 109.67998 * 69.19035 * 27 16 15 48 48 H 1.09002 * 109.67911 * 189.70254 * 27 16 15 49 49 H 1.08999 * 109.50966 * 172.22668 * 28 27 16 50 50 H 1.08998 * 109.51169 * 292.32927 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6908 -1.1961 5 6 2.1491 -0.0077 -2.3757 6 1 1.8927 1.0403 -2.4242 7 6 2.6112 -0.6622 -3.5092 8 7 2.7365 -0.0058 -4.6432 9 14 3.0554 -2.4747 -3.4253 10 1 1.8580 -3.2931 -3.7440 11 1 4.1305 -2.7669 -4.4072 12 1 3.5310 -2.8050 -2.0578 13 6 2.0400 -0.7212 1.2493 14 1 1.6785 -0.2068 2.1397 15 6 3.5729 -0.7274 1.2483 16 7 4.0344 -1.5825 2.3534 17 6 4.9484 -1.1389 3.2388 18 8 5.4070 -0.0216 3.1287 19 6 5.4005 -2.0313 4.3660 20 7 6.3891 -1.3230 5.1830 21 6 5.9524 -0.5151 6.3244 22 6 7.7002 -1.4148 4.8847 23 8 8.0617 -2.0834 3.9395 24 6 8.7171 -0.6868 5.7255 25 6 9.4540 0.4894 5.0818 26 6 10.1894 -0.8292 5.3343 27 6 3.4637 -2.9342 2.4666 28 6 1.9361 -2.8206 2.4082 29 8 1.5639 -2.0692 1.2502 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 2.2490 -1.6319 -1.1525 34 1 3.0597 -0.4631 -5.4351 35 1 3.9442 0.2877 1.3900 36 1 3.9379 -1.1234 0.3007 37 1 4.5434 -2.2987 4.9839 38 1 5.8491 -2.9360 3.9556 39 1 5.9261 -1.1357 7.2201 40 1 6.6497 0.3093 6.4740 41 1 4.9566 -0.1176 6.1284 42 1 8.4833 -0.6137 6.7876 43 1 9.2030 0.7369 4.0504 44 1 9.7054 1.3361 5.7206 45 1 10.9242 -0.8494 6.1390 46 1 10.4225 -1.4498 4.4691 47 1 3.8177 -3.5523 1.6416 48 1 3.7632 -3.3809 3.4147 49 1 1.4989 -3.8174 2.3515 50 1 1.5742 -2.3146 3.3033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717614041.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:56 Heat of formation + Delta-G solvation = -80.473032 kcal Electronic energy + Delta-G solvation = -30927.246200 eV Core-core repulsion = 26762.679936 eV Total energy + Delta-G solvation = -4164.566264 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.80860 -40.96781 -39.61094 -37.30075 -37.21631 -36.52508 -35.84238 -34.26081 -32.19971 -30.87181 -30.32498 -28.52075 -27.58174 -25.85337 -25.05192 -24.57322 -23.44654 -23.31239 -21.41619 -20.65766 -19.94907 -19.72553 -18.72388 -18.48206 -17.84324 -17.45062 -16.88654 -16.70946 -16.43889 -16.18774 -16.07440 -15.92222 -15.50354 -15.17933 -15.07943 -14.83013 -14.58225 -14.41131 -14.31300 -13.88022 -13.72379 -13.60596 -13.37260 -13.34345 -13.05069 -12.96513 -12.86391 -12.57360 -12.51854 -12.49435 -12.14004 -11.84340 -11.75323 -11.63705 -11.57485 -11.48225 -11.24362 -11.08012 -11.02587 -11.00239 -9.81581 -9.68178 -9.28728 -8.03139 -5.34316 1.24657 1.34428 1.36798 1.43752 1.44311 1.65655 2.02517 2.46479 2.73355 2.87828 3.29294 3.36924 3.45339 3.54933 3.73355 3.80953 3.88547 3.91648 3.97300 4.01515 4.08721 4.13249 4.19362 4.24835 4.25574 4.33123 4.45833 4.59610 4.68983 4.70815 4.73037 4.77500 4.82149 4.83701 4.91924 4.95582 4.97723 5.01918 5.15884 5.17612 5.21858 5.33738 5.56634 5.76890 6.17392 6.19924 6.23820 6.25545 6.94620 7.04988 7.08284 7.84992 8.04900 9.18747 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013761 B = 0.002956 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.274134 B = 9470.220562 C =10313.962365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.176 3.824 3 H 0.057 0.943 4 N -0.744 5.744 5 C -0.221 4.221 6 H 0.060 0.940 7 C -0.064 4.064 8 N -0.985 5.985 9 Si 0.951 3.049 10 H -0.276 1.276 11 H -0.300 1.300 12 H -0.260 1.260 13 C 0.096 3.904 14 H 0.087 0.913 15 C 0.090 3.910 16 N -0.613 5.613 17 C 0.491 3.509 18 O -0.578 6.578 19 C 0.101 3.899 20 N -0.599 5.599 21 C 0.076 3.924 22 C 0.534 3.466 23 O -0.590 6.590 24 C -0.191 4.191 25 C -0.151 4.151 26 C -0.149 4.149 27 C 0.064 3.936 28 C 0.043 3.957 29 O -0.386 6.386 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.055 0.945 33 H 0.367 0.633 34 H 0.256 0.744 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.159 0.841 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.163 0.837 43 H 0.067 0.933 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.135 0.865 49 H 0.133 0.867 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.904 -6.699 33.745 34.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.068 3.932 3 H 0.075 0.925 4 N -0.388 5.388 5 C -0.352 4.352 6 H 0.078 0.922 7 C -0.255 4.255 8 N -0.636 5.636 9 Si 0.779 3.221 10 H -0.202 1.202 11 H -0.227 1.227 12 H -0.185 1.185 13 C 0.037 3.963 14 H 0.104 0.896 15 C -0.033 4.033 16 N -0.347 5.347 17 C 0.280 3.720 18 O -0.458 6.458 19 C -0.025 4.025 20 N -0.330 5.330 21 C -0.066 4.066 22 C 0.324 3.676 23 O -0.470 6.470 24 C -0.212 4.212 25 C -0.188 4.188 26 C -0.186 4.186 27 C -0.058 4.058 28 C -0.034 4.034 29 O -0.305 6.305 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.201 0.799 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.176 0.824 38 H 0.129 0.871 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.181 0.819 43 H 0.085 0.915 44 H 0.155 0.845 45 H 0.154 0.846 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.153 0.847 49 H 0.151 0.849 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.207 -6.360 32.959 33.969 hybrid contribution 0.443 -0.593 -1.255 1.457 sum 5.650 -6.953 31.704 32.946 Atomic orbital electron populations 1.22140 0.96187 1.01712 1.00747 1.20493 0.94094 0.94615 0.84031 0.92478 1.42694 1.79623 1.09725 1.06726 1.19049 1.34506 0.94448 0.87214 0.92224 1.25397 1.02737 1.02070 0.95318 1.69868 1.55087 1.37524 1.01098 0.85467 0.77625 0.81557 0.77453 1.20246 1.22694 1.18485 1.22579 0.90848 0.84227 0.98652 0.89555 1.22069 0.95868 0.96142 0.89263 1.48332 1.41950 1.16534 1.27891 1.21980 0.77951 0.88157 0.83924 1.90679 1.56626 1.22917 1.75531 1.21513 0.94965 0.94317 0.91704 1.47523 1.04845 1.49866 1.30729 1.22111 1.01798 0.95638 0.87009 1.20474 0.83546 0.79888 0.83649 1.90679 1.80846 1.43620 1.31860 1.22306 0.93077 1.04444 1.01360 1.22987 1.01795 0.92767 1.01290 1.23034 0.92280 0.99242 1.04031 1.22824 0.95618 0.82010 1.05335 1.23272 0.92661 0.98633 0.88834 1.88029 1.75383 1.23389 1.43686 0.90924 0.94703 0.92625 0.79892 0.93497 0.90443 0.92896 0.82361 0.87080 0.88787 0.89942 0.90734 0.81918 0.91454 0.84526 0.84589 0.90330 0.91278 0.84730 0.84938 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 9.35 71.98 0.67 -4.38 16 2 C 0.18 6.71 2.74 44.99 0.12 6.83 16 3 H 0.06 2.29 8.08 -2.39 -0.02 2.27 16 4 N -0.74 -35.57 4.09 -322.94 -1.32 -36.89 16 5 C -0.22 -12.89 10.41 84.03 0.87 -12.02 16 6 H 0.06 3.78 8.06 -2.91 -0.02 3.75 16 7 C -0.06 -3.91 5.50 84.86 0.47 -3.44 16 8 N -0.98 -65.16 13.97 21.65 0.30 -64.86 16 9 Si 0.95 48.18 27.73 68.60 1.90 50.08 16 10 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 11 H -0.30 -15.45 7.11 99.48 0.71 -14.75 16 12 H -0.26 -12.24 6.52 99.48 0.65 -11.59 16 13 C 0.10 2.93 2.53 30.69 0.08 3.00 16 14 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 15 C 0.09 3.09 5.87 86.35 0.51 3.60 16 16 N -0.61 -16.30 3.02 -817.35 -2.47 -18.77 16 17 C 0.49 13.56 7.78 87.66 0.68 14.24 16 18 O -0.58 -21.42 15.90 -3.04 -0.05 -21.47 16 19 C 0.10 1.78 4.26 85.63 0.36 2.14 16 20 N -0.60 -11.07 2.36 -851.10 -2.01 -13.08 16 21 C 0.08 0.72 10.01 127.77 1.28 1.99 16 22 C 0.53 12.94 7.46 87.66 0.65 13.59 16 23 O -0.59 -20.04 15.84 -3.04 -0.05 -20.09 16 24 C -0.19 -3.03 4.79 -11.54 -0.06 -3.09 16 25 C -0.15 -2.47 10.24 30.62 0.31 -2.16 16 26 C -0.15 -2.34 10.05 30.62 0.31 -2.04 16 27 C 0.06 1.12 6.54 86.35 0.57 1.68 16 28 C 0.04 0.71 6.99 72.08 0.50 1.21 16 29 O -0.39 -10.82 9.22 -148.98 -1.37 -12.20 16 30 H 0.07 1.94 8.14 -2.38 -0.02 1.93 16 31 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.89 7.68 -2.39 -0.02 1.88 16 33 H 0.37 17.47 5.06 -92.71 -0.47 17.00 16 34 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 35 H 0.08 2.95 7.08 -2.38 -0.02 2.93 16 36 H 0.05 2.20 7.26 -2.39 -0.02 2.18 16 37 H 0.16 1.09 7.59 -2.39 -0.02 1.07 16 38 H 0.11 2.08 7.29 -2.39 -0.02 2.06 16 39 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.08 0.71 6.64 -2.38 -0.02 0.70 16 41 H 0.07 0.71 8.07 -2.39 -0.02 0.69 16 42 H 0.16 1.24 7.27 -2.39 -0.02 1.22 16 43 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 44 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.08 1.71 7.67 -2.39 -0.02 1.70 16 47 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.13 1.09 6.05 -2.39 -0.01 1.07 16 49 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -90.45 400.90 2.68 -87.76 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 0.41 Total: 28.32 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 7.33 Total: 21.19 kcal Atomic # 7 Polarization: -128.10 SS G_CDS: -5.50 Total: -133.60 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -1.47 Total: -53.75 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 1.90 Total: 50.08 kcal Total: -90.45 2.68 -87.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717614041.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.291 kcal (2) G-P(sol) polarization free energy of solvation -90.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds