Wall clock time and date at job start Sat Apr 11 2020 05:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46798 * 2 1 4 4 N 1.46499 * 109.47263 * 240.00498 * 2 1 3 5 5 C 1.36938 * 120.00206 * 84.99546 * 4 2 1 6 6 H 1.08005 * 119.99649 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00226 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00148 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99951 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47567 * 89.99450 * 9 7 5 11 11 H 1.48502 * 109.47254 * 209.99632 * 9 7 5 12 12 H 1.48503 * 109.46891 * 329.99548 * 9 7 5 13 13 C 1.52992 * 109.47025 * 120.00426 * 2 1 3 14 14 H 1.09008 * 109.55410 * 174.87518 * 13 2 1 15 15 C 1.53297 * 109.51315 * 294.99650 * 13 2 1 16 16 N 1.47150 * 108.41463 * 172.20715 * 15 13 2 17 17 C 1.34783 * 120.98195 * 129.46998 * 16 15 13 18 18 O 1.21277 * 119.99806 * 359.97438 * 17 16 15 19 19 C 1.50695 * 119.99989 * 180.02562 * 17 16 15 20 20 N 1.46506 * 109.47025 * 180.02562 * 19 17 16 21 21 C 1.46496 * 120.00072 * 89.99464 * 20 19 17 22 22 C 1.34783 * 119.99729 * 270.00000 * 20 19 17 23 23 O 1.21277 * 119.99914 * 359.97438 * 22 20 19 24 24 C 1.50701 * 119.99633 * 179.97438 * 22 20 19 25 25 C 1.52991 * 117.49719 * 248.61863 * 24 22 20 26 26 C 1.53004 * 60.00289 * 252.51398 * 25 24 22 27 27 C 1.47168 * 118.03241 * 309.53266 * 16 15 13 28 28 C 1.53293 * 108.40979 * 50.46649 * 27 16 15 29 29 O 1.42959 * 109.51549 * 54.74626 * 13 2 1 30 30 H 1.09002 * 109.47022 * 299.99864 * 1 2 3 31 31 H 1.08999 * 109.46936 * 59.99464 * 1 2 3 32 32 H 1.08992 * 109.47207 * 179.97438 * 1 2 3 33 33 H 0.96999 * 119.99818 * 265.00498 * 4 2 1 34 34 H 0.96999 * 119.99829 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.68431 * 291.95330 * 15 13 2 36 36 H 1.08999 * 109.67914 * 52.46916 * 15 13 2 37 37 H 1.09004 * 109.47229 * 299.99184 * 19 17 16 38 38 H 1.08994 * 109.47573 * 59.99986 * 19 17 16 39 39 H 1.09002 * 109.47152 * 90.00518 * 21 20 19 40 40 H 1.09004 * 109.47050 * 209.99740 * 21 20 19 41 41 H 1.09000 * 109.47674 * 329.99970 * 21 20 19 42 42 H 1.09000 * 115.55333 * 34.33270 * 24 22 20 43 43 H 1.09004 * 117.50260 * 0.02562 * 25 24 22 44 44 H 1.09005 * 117.50150 * 145.02712 * 25 24 22 45 45 H 1.09000 * 117.49952 * 252.51292 * 26 25 24 46 46 H 1.09003 * 117.49873 * 107.48753 * 26 25 24 47 47 H 1.08999 * 109.64585 * 290.75020 * 27 16 15 48 48 H 1.08993 * 109.68736 * 170.21126 * 27 16 15 49 49 H 1.09003 * 109.51469 * 187.79924 * 28 27 16 50 50 H 1.09001 * 109.55556 * 67.67308 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1491 -0.0073 -2.3758 6 1 1.8925 1.0407 -2.4241 7 6 2.6123 -0.6614 -3.5091 8 7 2.7375 -0.0049 -4.6430 9 14 3.0567 -2.4738 -3.4253 10 1 1.8597 -3.2924 -3.7452 11 1 4.1325 -2.7656 -4.4065 12 1 3.5313 -2.8044 -2.0575 13 6 2.0400 -0.7213 1.2491 14 1 3.1262 -0.8022 1.2058 15 6 1.6350 0.0696 2.4983 16 7 1.9691 -0.7333 3.6854 17 6 2.6758 -0.2047 4.7040 18 8 3.0467 0.9488 4.6505 19 6 3.0062 -1.0472 5.9090 20 7 3.7742 -0.2486 6.8675 21 6 3.0795 0.5218 7.9019 22 6 5.1200 -0.2228 6.7976 23 8 5.6951 -0.8609 5.9415 24 6 5.9100 0.5991 7.7832 25 6 6.6414 1.8321 7.2489 26 6 7.4343 0.5870 7.6515 27 6 1.5099 -2.1309 3.7267 28 6 1.9210 -2.8145 2.4177 29 8 1.4659 -2.0290 1.3133 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 2.2490 -1.6317 -1.1527 34 1 3.0616 -0.4619 -5.4348 35 1 2.1798 1.0132 2.5281 36 1 0.5629 0.2652 2.4773 37 1 2.0832 -1.3881 6.3781 38 1 3.5962 -1.9095 5.5988 39 1 2.9557 -0.0945 8.7924 40 1 3.6656 1.4065 8.1511 41 1 2.1006 0.8268 7.5320 42 1 5.4922 0.6576 8.7883 43 1 6.5509 2.0491 6.1845 44 1 6.7048 2.7022 7.9023 45 1 8.0193 0.6380 8.5699 46 1 7.8657 -0.0154 6.8520 47 1 0.4251 -2.1573 3.8297 48 1 1.9718 -2.6443 4.5699 49 1 1.4720 -3.8065 2.3684 50 1 3.0066 -2.9038 2.3781 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717614043.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:04 Heat of formation + Delta-G solvation = -52.252226 kcal Electronic energy + Delta-G solvation = -30684.652069 eV Core-core repulsion = 26521.309552 eV Total energy + Delta-G solvation = -4163.342518 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.89564 -40.02919 -38.49875 -36.56320 -35.73028 -35.66613 -34.65891 -32.53128 -30.81844 -29.74452 -28.82950 -27.27933 -26.81285 -24.94169 -23.85498 -23.41026 -22.75612 -22.04368 -19.91362 -19.70595 -19.03606 -17.96386 -17.85490 -17.44006 -16.87684 -16.20391 -15.85854 -15.78425 -15.43705 -15.09176 -14.85837 -14.72076 -14.45493 -14.23709 -13.91470 -13.54938 -13.34640 -13.19954 -12.98072 -12.81308 -12.73009 -12.65473 -12.37436 -12.28431 -12.08209 -11.86737 -11.58278 -11.27746 -10.95794 -10.91973 -10.86370 -10.75904 -10.64987 -10.40926 -10.19656 -10.13406 -9.99088 -9.94112 -9.54847 -9.03563 -8.89351 -8.60303 -7.22803 -5.72685 -3.07709 2.09534 2.39068 2.40626 2.86407 3.43299 3.48320 3.50051 3.52630 3.82865 4.08348 4.20477 4.42282 4.53834 4.59871 4.62656 4.64802 4.67932 4.71980 4.76581 4.91511 4.94916 5.02693 5.08754 5.21736 5.27987 5.28772 5.30769 5.37746 5.56025 5.56373 5.60379 5.62563 5.70635 5.72459 5.80304 5.89791 5.92817 6.12943 6.26353 6.36311 6.48707 6.75615 6.91789 7.07574 7.14797 7.32522 7.81710 7.96262 8.03552 8.46620 9.25835 9.98275 10.19281 11.45589 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015383 B = 0.002622 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.774019 B =10675.420636 C =11275.790689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.191 3.809 3 H 0.068 0.932 4 N -0.744 5.744 5 C -0.242 4.242 6 H 0.091 0.909 7 C 0.004 3.996 8 N -0.935 5.935 9 Si 0.885 3.115 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.277 1.277 13 C 0.072 3.928 14 H 0.064 0.936 15 C 0.085 3.915 16 N -0.613 5.613 17 C 0.499 3.501 18 O -0.528 6.528 19 C 0.098 3.902 20 N -0.599 5.599 21 C 0.083 3.917 22 C 0.550 3.450 23 O -0.534 6.534 24 C -0.194 4.194 25 C -0.149 4.149 26 C -0.149 4.149 27 C 0.072 3.928 28 C 0.044 3.956 29 O -0.362 6.362 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.366 0.634 34 H 0.259 0.741 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.124 0.876 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.108 0.892 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.105 0.895 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.451 -2.519 32.463 32.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.081 3.919 3 H 0.086 0.914 4 N -0.387 5.387 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.582 5.582 9 Si 0.715 3.285 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.203 1.203 13 C 0.012 3.988 14 H 0.082 0.918 15 C -0.038 4.038 16 N -0.349 5.349 17 C 0.286 3.714 18 O -0.404 6.404 19 C -0.028 4.028 20 N -0.332 5.332 21 C -0.060 4.060 22 C 0.339 3.661 23 O -0.410 6.410 24 C -0.216 4.216 25 C -0.186 4.186 26 C -0.186 4.186 27 C -0.051 4.051 28 C -0.034 4.034 29 O -0.280 6.280 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.199 0.801 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.142 0.858 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.126 0.874 47 H 0.099 0.901 48 H 0.107 0.893 49 H 0.123 0.877 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.058 -2.112 31.669 31.739 hybrid contribution 0.235 -1.298 0.164 1.330 sum 0.177 -3.410 31.833 32.016 Atomic orbital electron populations 1.22377 0.98111 1.01647 1.00077 1.20164 0.93020 0.94859 0.83903 0.91447 1.42701 1.79502 1.09745 1.06738 1.19076 1.36942 0.95598 0.85578 0.89165 1.24650 1.01400 0.97539 0.95531 1.69705 1.52711 1.35590 1.00235 0.86530 0.78074 0.86865 0.76996 1.21066 1.21880 1.20281 1.23027 0.97687 0.83000 0.95042 0.91781 1.22449 1.01970 0.95838 0.83539 1.48206 1.54839 1.12812 1.19024 1.21131 0.77563 0.88387 0.84340 1.90702 1.52047 1.17867 1.79784 1.21332 0.98056 0.94549 0.88896 1.47304 1.05643 1.48726 1.31532 1.21820 0.98242 0.95904 0.90009 1.19732 0.81478 0.80732 0.84184 1.90713 1.69584 1.43837 1.36860 1.22151 0.95812 1.03539 1.00047 1.22960 1.01523 0.91345 1.02771 1.22980 0.90741 1.00817 1.04055 1.22507 1.00888 0.81745 0.99952 1.22923 0.99688 0.95165 0.85665 1.88069 1.67689 1.26015 1.46251 0.94362 0.92381 0.92518 0.80071 0.93104 0.88169 0.89950 0.87392 0.86836 0.92288 0.90405 0.90924 0.85771 0.87962 0.87656 0.87834 0.87384 0.90061 0.89315 0.87718 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.06 37.16 0.34 -2.56 16 2 C 0.19 3.75 2.77 -67.93 -0.19 3.56 16 3 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 4 N -0.74 -18.19 4.91 -53.43 -0.26 -18.45 16 5 C -0.24 -6.96 10.41 -15.06 -0.16 -7.11 16 6 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 7 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 8 N -0.93 -29.88 13.97 55.49 0.78 -29.11 16 9 Si 0.88 22.91 27.74 -169.99 -4.71 18.20 16 10 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 12 H -0.28 -6.85 6.52 56.52 0.37 -6.49 16 13 C 0.07 1.20 2.61 -26.58 -0.07 1.13 16 14 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 15 C 0.08 1.20 5.82 -3.53 -0.02 1.18 16 16 N -0.61 -7.49 3.02 -172.27 -0.52 -8.01 16 17 C 0.50 6.48 7.78 -10.98 -0.09 6.39 16 18 O -0.53 -8.87 15.90 5.56 0.09 -8.78 16 19 C 0.10 0.91 4.26 -5.19 -0.02 0.88 16 20 N -0.60 -5.76 2.36 -182.95 -0.43 -6.20 16 21 C 0.08 0.49 10.01 59.84 0.60 1.09 16 22 C 0.55 6.49 7.46 -10.98 -0.08 6.41 16 23 O -0.53 -8.44 15.84 5.56 0.09 -8.35 16 24 C -0.19 -1.62 4.80 -91.77 -0.44 -2.06 16 25 C -0.15 -1.20 10.23 -26.73 -0.27 -1.47 16 26 C -0.15 -1.18 10.04 -26.73 -0.27 -1.45 16 27 C 0.07 0.64 6.54 -3.53 -0.02 0.62 16 28 C 0.04 0.49 6.99 37.31 0.26 0.76 16 29 O -0.36 -5.75 9.24 -35.23 -0.33 -6.08 16 30 H 0.04 0.56 6.42 -51.93 -0.33 0.23 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.03 7.55 -51.93 -0.39 0.64 16 33 H 0.37 9.03 5.45 -40.82 -0.22 8.80 16 34 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 35 H 0.10 1.56 7.08 -51.93 -0.37 1.20 16 36 H 0.08 1.09 6.27 -51.93 -0.33 0.76 16 37 H 0.11 0.58 7.95 -51.93 -0.41 0.17 16 38 H 0.11 1.08 6.94 -51.93 -0.36 0.72 16 39 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 40 H 0.08 0.42 6.64 -51.93 -0.34 0.07 16 41 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 42 H 0.12 0.67 7.26 -51.93 -0.38 0.29 16 43 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.11 1.07 7.67 -51.93 -0.40 0.68 16 47 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.09 0.52 6.05 -51.93 -0.31 0.21 16 49 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 399.07 15.07 6.01 6.01 Total: -1.00 -38.34 399.07 -7.90 -46.24 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -8.08 Total: 7.12 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -0.53 Total: 7.41 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: -0.44 Total: -61.77 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.15 Total: -23.21 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.71 Total: 18.20 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.34 -7.90 -46.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717614043.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.014 kcal (2) G-P(sol) polarization free energy of solvation -38.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds