Wall clock time and date at job start Sat Apr 11 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.46838 * 2 1 4 4 N 1.46490 * 109.47047 * 119.99742 * 2 1 3 5 5 C 1.36942 * 120.00431 * 274.99757 * 4 2 1 6 6 H 1.08003 * 119.99396 * 0.02562 * 5 4 2 7 7 C 1.38807 * 120.00532 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00426 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99675 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47066 * 89.99912 * 9 7 5 11 11 H 1.48499 * 109.46880 * 209.99905 * 9 7 5 12 12 H 1.48496 * 109.47234 * 329.99971 * 9 7 5 13 13 C 1.52997 * 109.47109 * 239.99931 * 2 1 3 14 14 H 1.09005 * 109.55438 * 185.12459 * 13 2 1 15 15 C 1.53300 * 109.51386 * 64.99947 * 13 2 1 16 16 N 1.47148 * 108.41473 * 187.79338 * 15 13 2 17 17 C 1.34784 * 120.98330 * 230.49467 * 16 15 13 18 18 O 1.21283 * 119.99557 * 359.97438 * 17 16 15 19 19 C 1.50690 * 120.00133 * 180.02562 * 17 16 15 20 20 N 1.46507 * 109.47125 * 179.97438 * 19 17 16 21 21 C 1.46500 * 119.99875 * 89.99688 * 20 19 17 22 22 C 1.34777 * 119.99683 * 270.00132 * 20 19 17 23 23 O 1.21281 * 120.00457 * 359.97438 * 22 20 19 24 24 C 1.50701 * 119.99716 * 179.97438 * 22 20 19 25 25 C 1.52996 * 117.49915 * 248.74790 * 24 22 20 26 26 C 1.52998 * 117.50033 * 180.08797 * 24 22 20 27 27 C 1.47148 * 118.03926 * 50.51693 * 16 15 13 28 28 C 1.53300 * 108.38206 * 309.46540 * 27 16 15 29 29 O 1.42955 * 109.22459 * 52.30018 * 28 27 16 30 30 H 1.09001 * 109.46827 * 59.99801 * 1 2 3 31 31 H 1.08995 * 109.46735 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46897 * 300.00588 * 1 2 3 33 33 H 0.97009 * 120.00016 * 95.00316 * 4 2 1 34 34 H 0.96997 * 120.00001 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.68260 * 68.04945 * 15 13 2 36 36 H 1.08999 * 109.68056 * 307.53378 * 15 13 2 37 37 H 1.09000 * 109.47397 * 299.99733 * 19 17 16 38 38 H 1.09004 * 109.47328 * 59.99995 * 19 17 16 39 39 H 1.09006 * 109.46736 * 89.99960 * 21 20 19 40 40 H 1.08999 * 109.46933 * 210.00276 * 21 20 19 41 41 H 1.08994 * 109.47028 * 330.00674 * 21 20 19 42 42 H 1.09001 * 115.54908 * 34.41554 * 24 22 20 43 43 H 1.09004 * 117.50235 * 359.97438 * 25 24 22 44 44 H 1.08997 * 117.50183 * 145.01681 * 25 24 22 45 45 H 1.09000 * 117.49957 * 214.98070 * 26 24 22 46 46 H 1.09001 * 117.49897 * 359.97438 * 26 24 22 47 47 H 1.09002 * 109.68553 * 69.18322 * 27 16 15 48 48 H 1.09004 * 109.68438 * 189.74263 * 27 16 15 49 49 H 1.09005 * 109.51071 * 172.22485 * 28 27 16 50 50 H 1.08997 * 109.51211 * 292.32088 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1492 -0.0074 2.3757 6 1 1.8920 1.0405 2.4243 7 6 2.6114 -0.6618 3.5093 8 7 2.7367 -0.0053 4.6432 9 14 3.0556 -2.4743 3.4254 10 1 4.4884 -2.6165 3.0621 11 1 2.8154 -3.1045 4.7485 12 1 2.2160 -3.1427 2.3991 13 6 2.0401 -0.7212 -1.2492 14 1 3.1262 -0.8022 -1.2059 15 6 1.6350 0.0697 -2.4984 16 7 1.9691 -0.7331 -3.6855 17 6 2.6752 -0.2043 -4.7045 18 8 3.0447 0.9497 -4.6515 19 6 3.0046 -1.0464 -5.9099 20 7 3.7721 -0.2476 -6.8687 21 6 5.2349 -0.2196 -6.7937 22 6 3.1323 0.4616 -7.8197 23 8 1.9213 0.4381 -7.8820 24 6 3.9217 1.2837 -8.8056 25 6 3.8140 2.8063 -8.7020 26 6 3.1375 2.0678 -9.8595 27 6 1.5092 -2.1302 -3.7275 28 6 1.9211 -2.8144 -2.4189 29 8 1.4666 -2.0293 -1.3140 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 2.2491 -1.6317 1.1526 34 1 3.0593 -0.4627 5.4353 35 1 2.1798 1.0133 -2.5281 36 1 0.5629 0.2653 -2.4774 37 1 3.5948 -1.9089 -5.6004 38 1 2.0812 -1.3872 -6.3784 39 1 5.6456 -1.0200 -7.4093 40 1 5.5990 0.7414 -7.1569 41 1 5.5484 -0.3597 -5.7593 42 1 4.8841 0.8662 -9.1016 43 1 3.1718 3.2135 -7.9210 44 1 4.7053 3.3907 -8.9302 45 1 3.5840 2.1666 -10.8490 46 1 2.0505 1.9888 -9.8402 47 1 0.4243 -2.1567 -3.8298 48 1 1.9707 -2.6435 -4.5712 49 1 1.4721 -3.8065 -2.3698 50 1 3.0067 -2.9039 -2.3809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717614044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:08 Heat of formation + Delta-G solvation = -80.050036 kcal Electronic energy + Delta-G solvation = -30568.538761 eV Core-core repulsion = 26403.990840 eV Total energy + Delta-G solvation = -4164.547921 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -41.80917 -40.96907 -39.61541 -37.31791 -37.20855 -36.50781 -35.80605 -34.39140 -32.45283 -30.62957 -30.24000 -28.26614 -27.57224 -26.39594 -24.94890 -24.55722 -23.42419 -23.29394 -21.42373 -20.65713 -19.85913 -19.74909 -18.70477 -18.46535 -17.87665 -17.27595 -16.93892 -16.75722 -16.52363 -16.34533 -16.06107 -15.82675 -15.55437 -15.21193 -15.05487 -14.79533 -14.49812 -14.44497 -14.32400 -13.88372 -13.87361 -13.59434 -13.36986 -13.31298 -13.09547 -12.95879 -12.92311 -12.50411 -12.47592 -12.38861 -12.12157 -11.84294 -11.77399 -11.63279 -11.56345 -11.47045 -11.28305 -11.08446 -10.99557 -10.98565 -9.80850 -9.65208 -9.33542 -8.02156 -5.35520 1.26237 1.37662 1.40746 1.44555 1.49410 1.65686 2.02597 2.48908 2.72572 2.89183 3.29816 3.34574 3.42131 3.46104 3.82035 3.83771 3.90572 3.93017 3.94902 4.02465 4.06163 4.13624 4.21340 4.26162 4.27025 4.32607 4.41210 4.56761 4.59258 4.68893 4.70499 4.76875 4.79923 4.84754 4.91096 4.93117 4.98765 5.01403 5.16694 5.18638 5.21184 5.33155 5.54666 5.76086 6.17312 6.19694 6.22354 6.24417 6.94813 7.05327 7.07593 7.83078 8.04344 9.19261 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021190 B = 0.002356 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.078984 B =11881.076235 C =12061.713964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.180 3.820 3 H 0.057 0.943 4 N -0.746 5.746 5 C -0.229 4.229 6 H 0.057 0.943 7 C -0.065 4.065 8 N -0.984 5.984 9 Si 0.955 3.045 10 H -0.278 1.278 11 H -0.296 1.296 12 H -0.252 1.252 13 C 0.092 3.908 14 H 0.053 0.947 15 C 0.092 3.908 16 N -0.613 5.613 17 C 0.493 3.507 18 O -0.577 6.577 19 C 0.100 3.900 20 N -0.599 5.599 21 C 0.075 3.925 22 C 0.537 3.463 23 O -0.586 6.586 24 C -0.195 4.195 25 C -0.151 4.151 26 C -0.147 4.147 27 C 0.071 3.929 28 C 0.037 3.963 29 O -0.384 6.384 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.033 0.967 33 H 0.368 0.632 34 H 0.257 0.743 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.152 0.848 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.159 0.841 43 H 0.071 0.929 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.082 0.918 47 H 0.088 0.912 48 H 0.130 0.870 49 H 0.134 0.866 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.908 -6.869 -33.478 34.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.071 3.929 3 H 0.075 0.925 4 N -0.389 5.389 5 C -0.360 4.360 6 H 0.075 0.925 7 C -0.257 4.257 8 N -0.635 5.635 9 Si 0.782 3.218 10 H -0.204 1.204 11 H -0.223 1.223 12 H -0.177 1.177 13 C 0.033 3.967 14 H 0.071 0.929 15 C -0.032 4.032 16 N -0.347 5.347 17 C 0.281 3.719 18 O -0.456 6.456 19 C -0.027 4.027 20 N -0.330 5.330 21 C -0.066 4.066 22 C 0.328 3.672 23 O -0.466 6.466 24 C -0.216 4.216 25 C -0.188 4.188 26 C -0.184 4.184 27 C -0.050 4.050 28 C -0.040 4.040 29 O -0.303 6.303 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.202 0.798 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.169 0.831 38 H 0.136 0.864 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.177 0.823 43 H 0.090 0.910 44 H 0.152 0.848 45 H 0.152 0.848 46 H 0.101 0.899 47 H 0.106 0.894 48 H 0.148 0.852 49 H 0.151 0.849 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.366 -6.181 -33.223 34.074 hybrid contribution 0.219 -0.472 1.005 1.132 sum 4.585 -6.652 -32.218 33.216 Atomic orbital electron populations 1.22203 0.96748 1.01647 1.00396 1.20364 0.93904 0.94598 0.83985 0.92541 1.42669 1.79922 1.09644 1.06699 1.19034 1.35103 0.94391 0.87441 0.92507 1.25493 1.02405 1.02662 0.95113 1.69886 1.54719 1.37732 1.01122 0.85397 0.78550 0.80808 0.76999 1.20419 1.22274 1.17699 1.22519 0.96529 0.83872 0.93782 0.92892 1.22157 1.01923 0.95187 0.83932 1.48292 1.54369 1.14061 1.18004 1.21911 0.76879 0.88249 0.84817 1.90684 1.54530 1.19807 1.80538 1.21519 1.00571 0.93731 0.86866 1.47516 1.08801 1.47458 1.29247 1.22087 0.76521 1.04311 1.03681 1.20381 0.87224 0.78418 0.81193 1.90660 1.16226 1.64939 1.74770 1.22313 1.03113 0.94752 1.01421 1.22989 1.04124 0.90784 1.00906 1.23034 0.99508 1.00764 0.95089 1.22770 1.02056 0.79713 1.00481 1.23282 1.00173 0.95782 0.84741 1.88034 1.68137 1.25501 1.48606 0.91372 0.92554 0.94789 0.79837 0.93378 0.89995 0.89699 0.83083 0.86434 0.88951 0.89868 0.91127 0.82333 0.91046 0.84833 0.84830 0.89943 0.89361 0.85211 0.84876 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.38 9.06 71.98 0.65 -4.73 16 2 C 0.18 7.00 2.77 44.99 0.12 7.12 16 3 H 0.06 2.31 8.08 -2.38 -0.02 2.29 16 4 N -0.75 -35.71 4.91 -322.95 -1.59 -37.29 16 5 C -0.23 -13.29 10.41 84.03 0.87 -12.41 16 6 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 7 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 8 N -0.98 -64.03 13.97 21.65 0.30 -63.73 16 9 Si 0.96 46.36 27.74 68.60 1.90 48.26 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 12 H -0.25 -11.24 6.52 99.48 0.65 -10.59 16 13 C 0.09 2.88 2.61 30.69 0.08 2.96 16 14 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 15 C 0.09 2.55 5.82 86.36 0.50 3.06 16 16 N -0.61 -13.78 3.02 -817.34 -2.47 -16.25 16 17 C 0.49 12.10 7.78 87.65 0.68 12.78 16 18 O -0.58 -19.48 15.90 -3.04 -0.05 -19.53 16 19 C 0.10 1.55 4.26 85.63 0.36 1.92 16 20 N -0.60 -10.21 2.36 -851.12 -2.01 -12.22 16 21 C 0.08 0.72 10.01 127.77 1.28 2.00 16 22 C 0.54 11.72 7.46 87.66 0.65 12.38 16 23 O -0.59 -17.73 15.84 -3.03 -0.05 -17.78 16 24 C -0.20 -2.77 4.79 -11.54 -0.06 -2.83 16 25 C -0.15 -2.15 10.24 30.62 0.31 -1.84 16 26 C -0.15 -1.99 10.05 30.62 0.31 -1.68 16 27 C 0.07 1.01 6.54 86.36 0.56 1.57 16 28 C 0.04 0.64 6.99 72.08 0.50 1.14 16 29 O -0.38 -10.89 9.25 -148.98 -1.38 -12.26 16 30 H 0.07 2.01 6.42 -2.39 -0.02 1.99 16 31 H 0.06 2.01 7.56 -2.39 -0.02 2.00 16 32 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.37 17.18 5.45 -92.70 -0.51 16.67 16 34 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 35 H 0.08 2.59 7.08 -2.39 -0.02 2.58 16 36 H 0.08 2.29 6.27 -2.39 -0.01 2.28 16 37 H 0.15 1.00 7.59 -2.39 -0.02 0.99 16 38 H 0.12 1.81 7.29 -2.38 -0.02 1.80 16 39 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 40 H 0.08 0.72 6.64 -2.39 -0.02 0.70 16 41 H 0.07 0.75 8.07 -2.39 -0.02 0.73 16 42 H 0.16 1.09 7.27 -2.39 -0.02 1.07 16 43 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.08 1.55 7.67 -2.39 -0.02 1.53 16 47 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.13 0.77 6.05 -2.38 -0.01 0.76 16 49 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 50 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -87.26 399.08 2.36 -84.90 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: 0.38 Total: 27.92 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 7.31 Total: 17.98 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -5.76 Total: -129.49 kcal Atomic # 8 Polarization: -48.09 SS G_CDS: -1.47 Total: -49.57 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.90 Total: 48.26 kcal Total: -87.26 2.36 -84.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717614044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.845 kcal (2) G-P(sol) polarization free energy of solvation -87.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds