Wall clock time and date at job start Sat Apr 11 2020 05:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.56975 * 2 1 4 4 C 1.53102 * 109.59895 * 239.88050 * 2 1 3 5 5 O 1.42897 * 109.48502 * 182.57402 * 4 2 1 6 6 C 1.42902 * 114.09627 * 61.11307 * 5 4 2 7 7 C 1.53090 * 109.41824 * 298.84107 * 6 5 4 8 8 C 1.53170 * 109.52129 * 120.15402 * 2 1 3 9 9 H 1.09002 * 109.54406 * 56.93446 * 8 2 1 10 10 C 1.50701 * 109.54837 * 296.75778 * 8 2 1 11 11 O 1.21282 * 119.99532 * 342.84825 * 10 8 2 12 12 N 1.34767 * 120.00291 * 162.85263 * 10 8 2 13 13 C 1.46505 * 119.99995 * 183.84409 * 12 10 8 14 14 C 1.46500 * 120.00263 * 3.83941 * 12 10 8 15 15 C 1.53516 * 114.16865 * 245.54124 * 14 12 10 16 16 N 1.47480 * 87.99788 * 220.35585 * 15 14 12 17 17 C 1.46898 * 110.99946 * 138.67370 * 16 15 14 18 18 C 1.50700 * 109.47158 * 190.00073 * 17 16 15 19 19 O 1.21293 * 119.99712 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00017 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00184 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99606 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00107 * 180.02562 * 21 20 18 24 24 N 1.31418 * 119.99805 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99845 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.46740 * 90.00710 * 25 23 21 27 27 H 1.48504 * 109.46679 * 210.00218 * 25 23 21 28 28 H 1.48497 * 109.47347 * 330.00269 * 25 23 21 29 29 C 1.47483 * 87.83208 * 26.98224 * 16 15 14 30 30 H 1.08998 * 109.47059 * 299.84689 * 1 2 3 31 31 H 1.09006 * 109.46686 * 59.84497 * 1 2 3 32 32 H 1.09000 * 109.46632 * 179.83925 * 1 2 3 33 33 H 1.09004 * 109.47911 * 62.54930 * 4 2 1 34 34 H 1.08997 * 109.41588 * 302.56775 * 4 2 1 35 35 H 1.09005 * 109.48184 * 178.85609 * 6 5 4 36 36 H 1.09000 * 109.49237 * 58.82869 * 6 5 4 37 37 H 1.09005 * 109.52040 * 297.70278 * 7 6 5 38 38 H 1.09000 * 109.57859 * 177.54617 * 7 6 5 39 39 H 1.09004 * 109.46725 * 267.10232 * 13 12 10 40 40 H 1.08996 * 109.47324 * 27.10006 * 13 12 10 41 41 H 1.08997 * 109.47632 * 147.10361 * 13 12 10 42 42 H 1.08994 * 113.38243 * 18.62128 * 14 12 10 43 43 H 1.09003 * 113.47366 * 105.56245 * 15 14 12 44 44 H 1.08999 * 113.47943 * 335.15699 * 15 14 12 45 45 H 1.08997 * 109.47476 * 310.00831 * 17 16 15 46 46 H 1.09002 * 109.46711 * 70.00256 * 17 16 15 47 47 H 0.97001 * 119.99615 * 0.02562 * 20 18 17 48 48 H 0.96999 * 119.99442 * 180.02562 * 24 23 21 49 49 H 1.09000 * 113.47591 * 87.75652 * 29 16 15 50 50 H 1.09000 * 113.47335 * 218.15747 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0436 -0.7238 -1.2476 5 8 3.4713 -0.7749 -1.2152 6 6 4.0044 -1.4834 -0.0945 7 6 3.5716 -0.7890 1.1994 8 6 2.0419 -0.7252 1.2483 9 1 1.6355 -1.7363 1.2750 10 6 1.6078 0.0252 2.4810 11 8 1.2352 1.1759 2.3906 12 7 1.6336 -0.5822 3.6837 13 6 1.1326 0.1182 4.8690 14 6 2.1624 -1.9429 3.8060 15 6 1.1163 -2.9895 4.2148 16 7 2.1385 -3.5941 5.0891 17 6 1.5588 -3.9939 6.3783 18 6 2.6638 -4.3764 7.3290 19 8 3.8204 -4.3208 6.9682 20 7 2.3667 -4.7801 8.5801 21 6 3.3719 -5.1275 9.4451 22 1 4.4019 -5.0781 9.1239 23 6 3.0656 -5.5442 10.7348 24 7 4.0293 -5.8767 11.5642 25 14 1.2841 -5.6303 11.2901 26 1 0.7372 -6.9783 10.9914 27 1 1.2085 -5.3782 12.7516 28 1 0.4905 -4.6031 10.5689 29 6 2.7662 -2.2628 5.1820 30 1 -0.3633 0.5114 0.8913 31 1 -0.3633 0.5163 -0.8887 32 1 -0.3632 -1.0277 -0.0029 33 1 1.7193 -0.1865 -2.1388 34 1 1.6439 -1.7376 -1.2686 35 1 5.0928 -1.4935 -0.1550 36 1 3.6306 -2.5072 -0.1001 37 1 3.9792 0.2217 1.2244 38 1 3.9403 -1.3517 2.0570 39 1 1.9577 0.6305 5.3640 40 1 0.3798 0.8472 4.5692 41 1 0.6878 -0.6019 5.5557 42 1 2.7871 -2.2415 2.9642 43 1 0.8076 -3.6380 3.3948 44 1 0.2716 -2.5690 4.7605 45 1 0.9922 -3.1616 6.7957 46 1 0.8960 -4.8464 6.2298 47 1 1.4416 -4.8248 8.8684 48 1 3.8153 -6.1680 12.4643 49 1 2.3623 -1.6475 5.9860 50 1 3.8557 -2.2955 5.1830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723795807.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:19 Heat of formation + Delta-G solvation = -96.374027 kcal Electronic energy + Delta-G solvation = -30655.559232 eV Core-core repulsion = 26490.303450 eV Total energy + Delta-G solvation = -4165.255783 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.23331 -41.07521 -39.86964 -39.34827 -36.17314 -35.80557 -35.37916 -33.76894 -33.24052 -31.40940 -29.17483 -27.68053 -27.43664 -26.86503 -26.14898 -24.99813 -23.34807 -21.97305 -21.31719 -21.08425 -20.32884 -19.79518 -18.61195 -17.83236 -17.48958 -17.16220 -16.93197 -16.80614 -16.55963 -16.33641 -15.93978 -15.73993 -15.53264 -15.25514 -15.19427 -14.83795 -14.58253 -14.27284 -14.16396 -14.00132 -13.68852 -13.60451 -13.35644 -13.30301 -13.11951 -13.05094 -12.90453 -12.78002 -12.45524 -12.42440 -12.08195 -11.99931 -11.94264 -11.85914 -11.60498 -11.51284 -11.43441 -10.94021 -10.43735 -10.36217 -10.25535 -9.88450 -9.74720 -8.41911 -6.02916 1.28972 1.35107 1.43755 1.46716 1.80176 1.94629 2.22265 2.69953 2.96287 3.11879 3.16797 3.29556 3.40058 3.56349 3.66872 3.73202 3.90530 3.95772 4.07365 4.13562 4.25753 4.26400 4.34230 4.34871 4.44481 4.46758 4.48632 4.52214 4.58275 4.64881 4.68689 4.73606 4.78980 4.82781 4.86421 4.90037 4.94084 5.06850 5.11849 5.25626 5.28851 5.29616 5.40379 5.52372 5.86216 5.97088 6.25831 6.27175 6.58234 6.87574 7.05764 7.38699 7.95616 8.75692 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022938 B = 0.002285 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.392570 B =12249.230917 C =12783.363130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 H 0.062 0.938 4 C 0.066 3.934 5 O -0.402 6.402 6 C 0.062 3.938 7 C -0.148 4.148 8 C -0.103 4.103 9 H 0.119 0.881 10 C 0.523 3.477 11 O -0.571 6.571 12 N -0.600 5.600 13 C 0.078 3.922 14 C 0.116 3.884 15 C -0.008 4.008 16 N -0.463 5.463 17 C 0.020 3.980 18 C 0.451 3.549 19 O -0.608 6.608 20 N -0.592 5.592 21 C -0.327 4.327 22 H 0.055 0.945 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.965 3.035 26 H -0.257 1.257 27 H -0.277 1.277 28 H -0.230 1.230 29 C -0.004 4.004 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.143 0.857 43 H 0.116 0.884 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.125 0.875 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.076 0.924 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.669 9.089 -23.085 28.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 H 0.080 0.920 4 C -0.010 4.010 5 O -0.321 6.321 6 C -0.015 4.015 7 C -0.186 4.186 8 C -0.124 4.124 9 H 0.137 0.863 10 C 0.313 3.687 11 O -0.450 6.450 12 N -0.331 5.331 13 C -0.064 4.064 14 C 0.011 3.989 15 C -0.138 4.138 16 N -0.185 5.185 17 C -0.112 4.112 18 C 0.238 3.762 19 O -0.492 6.492 20 N -0.234 5.234 21 C -0.456 4.456 22 H 0.073 0.927 23 C -0.215 4.215 24 N -0.576 5.576 25 Si 0.785 3.215 26 H -0.181 1.181 27 H -0.202 1.202 28 H -0.153 1.153 29 C -0.133 4.133 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.160 0.840 43 H 0.134 0.866 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.143 0.857 47 H 0.225 0.775 48 H 0.088 0.912 49 H 0.094 0.906 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.529 9.152 -23.486 28.148 hybrid contribution -0.780 0.456 1.991 2.187 sum -13.310 9.608 -21.494 27.046 Atomic orbital electron populations 1.21746 0.93393 1.02638 1.02307 1.21558 0.97248 0.99760 0.93820 0.91971 1.22787 0.80180 1.00703 0.97369 1.87930 1.21405 1.76813 1.45999 1.22698 1.00129 0.95015 0.83649 1.22269 0.93071 1.02600 1.00646 1.21516 0.97561 1.01292 0.92014 0.86331 1.20961 0.76383 0.86427 0.84978 1.90668 1.48885 1.18849 1.86573 1.47879 1.61609 1.15573 1.08054 1.21698 0.99695 0.97693 0.87318 1.23043 0.96432 0.80395 0.98983 1.24471 0.95058 0.95673 0.98549 1.68781 1.17613 1.22463 1.09685 1.22483 0.94659 1.03905 0.90110 1.20833 0.90841 0.81724 0.82768 1.90554 1.23473 1.58028 1.77145 1.42045 1.08183 1.61434 1.11757 1.18979 0.89280 1.43474 0.93876 0.92715 1.26128 1.04377 0.95904 0.95070 1.69811 1.35161 1.45013 1.07568 0.85370 0.76924 0.80472 0.78775 1.18144 1.20210 1.15304 1.24201 1.01706 0.90393 0.97045 0.93676 0.91344 0.91052 0.87654 0.91050 0.87592 0.90834 0.92097 0.89126 0.92914 0.90758 0.89709 0.84012 0.86626 0.89321 0.89357 0.85734 0.77508 0.91179 0.90628 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.95 71.98 0.64 -1.34 16 2 C -0.10 -1.63 2.05 -10.70 -0.02 -1.66 16 3 H 0.06 1.32 7.82 -2.39 -0.02 1.30 16 4 C 0.07 0.84 6.13 72.02 0.44 1.28 16 5 O -0.40 -6.86 10.77 -148.98 -1.60 -8.47 16 6 C 0.06 0.81 6.84 72.01 0.49 1.30 16 7 C -0.15 -2.22 5.11 30.68 0.16 -2.06 16 8 C -0.10 -1.57 1.25 -11.42 -0.01 -1.58 16 9 H 0.12 1.29 7.37 -2.39 -0.02 1.27 16 10 C 0.52 10.88 6.28 87.66 0.55 11.43 16 11 O -0.57 -15.99 14.28 -3.04 -0.04 -16.04 16 12 N -0.60 -11.07 3.10 -821.24 -2.55 -13.61 16 13 C 0.08 1.40 9.12 127.77 1.17 2.57 16 14 C 0.12 1.99 3.85 45.47 0.17 2.17 16 15 C -0.01 -0.13 7.30 83.57 0.61 0.48 16 16 N -0.46 -11.77 6.06 -931.95 -5.65 -17.43 16 17 C 0.02 0.55 5.31 85.56 0.45 1.00 16 18 C 0.45 19.28 7.62 87.66 0.67 19.94 16 19 O -0.61 -32.36 15.33 -3.07 -0.05 -32.41 16 20 N -0.59 -26.84 5.09 -306.99 -1.56 -28.40 16 21 C -0.33 -18.74 10.16 84.04 0.85 -17.88 16 22 H 0.05 3.76 7.39 -2.91 -0.02 3.74 16 23 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 24 N -0.93 -55.75 13.96 21.66 0.30 -55.44 16 25 Si 0.96 37.71 27.74 68.60 1.90 39.62 16 26 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 27 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 28 H -0.23 -7.41 6.52 99.48 0.65 -6.76 16 29 C 0.00 -0.09 6.09 83.61 0.51 0.42 16 30 H 0.04 0.85 6.45 -2.39 -0.02 0.84 16 31 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.09 1.25 6.02 -2.39 -0.01 1.24 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.42 7.39 -2.39 -0.02 1.41 16 41 H 0.08 1.22 6.36 -2.39 -0.02 1.21 16 42 H 0.14 2.10 4.66 -2.39 -0.01 2.09 16 43 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.09 1.16 6.95 -2.39 -0.02 1.14 16 45 H 0.09 1.88 7.56 -2.39 -0.02 1.86 16 46 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 47 H 0.39 14.42 5.76 -92.71 -0.53 13.89 16 48 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 49 H 0.08 1.84 5.92 -2.39 -0.01 1.83 16 50 H 0.07 2.16 8.13 -2.39 -0.02 2.14 16 Total: -1.00 -80.85 386.13 -1.74 -82.59 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: 0.36 Total: 33.95 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 7.15 Total: 15.65 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -9.46 Total: -114.89 kcal Atomic # 8 Polarization: -55.22 SS G_CDS: -1.69 Total: -56.91 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 1.90 Total: 39.62 kcal Total: -80.85 -1.74 -82.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723795807.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.783 kcal (2) G-P(sol) polarization free energy of solvation -80.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds