Wall clock time and date at job start Sat Apr 11 2020 05:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46971 * 2 1 4 4 C 1.50701 * 109.46673 * 119.99881 * 2 1 3 5 5 O 1.21286 * 119.99303 * 120.00159 * 4 2 1 6 6 N 1.34772 * 120.00170 * 299.99784 * 4 2 1 7 7 C 1.46503 * 119.99983 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46807 * 180.02562 * 7 6 4 9 9 O 1.42900 * 110.64943 * 61.84746 * 8 7 6 10 10 C 1.54591 * 110.87460 * 298.58421 * 8 7 6 11 11 C 1.54002 * 105.14001 * 219.61874 * 10 8 7 12 12 N 1.47900 * 107.05481 * 358.77246 * 11 10 8 13 13 C 1.46908 * 110.99815 * 145.84530 * 12 11 10 14 14 C 1.50695 * 109.46810 * 52.60651 * 13 12 11 15 15 O 1.21295 * 120.00406 * 359.97438 * 14 13 12 16 16 N 1.34784 * 120.00043 * 180.02562 * 14 13 12 17 17 C 1.37092 * 120.00099 * 179.97438 * 16 14 13 18 18 H 1.08000 * 120.00013 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00067 * 179.97438 * 17 16 14 20 20 N 1.31412 * 120.00394 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99874 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47088 * 90.00037 * 21 19 17 23 23 H 1.48502 * 109.47103 * 210.00113 * 21 19 17 24 24 H 1.48503 * 109.47049 * 329.99816 * 21 19 17 25 25 C 1.48531 * 105.82143 * 25.33289 * 12 11 10 26 26 C 1.53000 * 109.46893 * 239.99767 * 2 1 3 27 27 C 1.52998 * 117.49879 * 128.75170 * 26 2 1 28 28 C 1.52996 * 117.49990 * 60.09071 * 26 2 1 29 29 H 1.09000 * 109.47084 * 300.00771 * 1 2 3 30 30 H 1.09002 * 109.47098 * 60.00188 * 1 2 3 31 31 H 1.09003 * 109.47371 * 180.02562 * 1 2 3 32 32 H 0.97005 * 120.00026 * 359.97438 * 6 4 2 33 33 H 1.08992 * 109.47542 * 59.99503 * 7 6 4 34 34 H 1.09000 * 109.46345 * 299.99620 * 7 6 4 35 35 H 0.96699 * 113.99294 * 303.15268 * 9 8 7 36 36 H 1.09004 * 110.31234 * 338.53038 * 10 8 7 37 37 H 1.09001 * 110.31387 * 100.60359 * 10 8 7 38 38 H 1.08993 * 109.91860 * 118.13167 * 11 10 8 39 39 H 1.09004 * 109.91704 * 239.42337 * 11 10 8 40 40 H 1.08995 * 109.46865 * 172.60370 * 13 12 11 41 41 H 1.08999 * 109.47057 * 292.60920 * 13 12 11 42 42 H 0.96999 * 119.99852 * 359.97438 * 16 14 13 43 43 H 0.96993 * 120.00306 * 180.02562 * 20 19 17 44 44 H 1.09001 * 110.67185 * 202.35127 * 25 12 11 45 45 H 1.09004 * 110.66470 * 79.22703 * 25 12 11 46 46 H 1.08996 * 115.54932 * 274.41701 * 26 2 1 47 47 H 1.09003 * 117.49873 * 359.97438 * 27 26 2 48 48 H 1.08997 * 117.50437 * 145.01629 * 27 26 2 49 49 H 1.09003 * 117.49768 * 214.97710 * 28 26 2 50 50 H 1.09000 * 117.50008 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.1954 -0.9402 3.6508 8 6 1.6847 -0.2193 4.9000 9 8 0.2567 -0.2429 4.9470 10 6 2.2100 1.2337 4.9508 11 6 2.5521 1.4862 6.4309 12 7 2.2077 0.2536 7.1721 13 6 3.1413 0.0297 8.2841 14 6 3.2157 1.2712 9.1351 15 8 2.5563 2.2467 8.8437 16 7 4.0157 1.2980 10.2194 17 6 4.0838 2.4276 10.9933 18 1 3.4967 3.2961 10.7338 19 6 4.9082 2.4551 12.1115 20 7 4.9731 3.5376 12.8536 21 14 5.9243 0.9531 12.5599 22 1 7.2473 1.0325 11.8901 23 1 6.1165 0.9069 14.0317 24 1 5.2167 -0.2742 12.1143 25 6 2.2859 -0.8500 6.1811 26 6 2.0400 -0.7213 -1.2492 27 6 3.0764 0.0038 -2.1101 28 6 1.6375 -0.1484 -2.6096 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.1493 0.5390 2.5436 33 1 3.2853 -0.9400 3.6507 34 1 1.8323 -1.9680 3.6509 35 1 -0.1687 0.1406 4.1679 36 1 3.1027 1.3352 4.3336 37 1 1.4384 1.9269 4.6157 38 1 3.6163 1.6973 6.5353 39 1 1.9659 2.3234 6.8099 40 1 2.7908 -0.8057 8.8901 41 1 4.1305 -0.1987 7.8876 42 1 4.5433 0.5181 10.4523 43 1 5.5489 3.5569 13.6339 44 1 1.6895 -1.7024 6.5066 45 1 3.3220 -1.1452 6.0150 46 1 2.1253 -1.8046 -1.1646 47 1 3.3946 0.9949 -1.7866 48 1 3.8432 -0.6025 -2.5921 49 1 1.4583 -0.8549 -3.4201 50 1 1.0090 0.7421 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724391008.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:40 Heat of formation + Delta-G solvation = -83.723700 kcal Electronic energy + Delta-G solvation = -29607.211943 eV Core-core repulsion = 25442.504720 eV Total energy + Delta-G solvation = -4164.707223 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.67182 -39.70715 -38.32928 -37.58793 -35.95331 -34.61627 -33.94978 -32.73639 -31.76761 -31.20026 -29.32626 -27.47807 -25.82200 -24.92907 -23.80211 -22.69042 -21.92019 -21.08594 -20.67696 -20.04308 -19.36622 -18.26729 -18.17363 -17.04155 -16.44868 -16.00780 -15.71079 -15.64854 -15.36224 -15.17435 -14.80604 -14.73640 -14.38023 -14.08736 -13.91968 -13.53694 -13.45934 -13.23035 -13.13769 -12.78380 -12.67240 -12.58982 -12.35551 -12.15620 -11.90921 -11.87459 -11.71914 -11.47799 -11.40106 -11.19661 -11.08419 -10.80783 -10.77986 -10.60173 -10.46222 -10.18580 -10.05102 -9.99134 -9.57394 -9.49499 -8.53412 -8.20729 -8.05026 -6.32956 -3.84453 2.28664 2.66747 3.01940 3.05587 3.14189 3.39341 3.70477 3.81949 3.92688 4.08754 4.10428 4.16311 4.39603 4.43840 4.48240 4.58021 4.61598 4.75591 4.78684 4.90559 4.94937 5.13356 5.17188 5.18812 5.20487 5.23813 5.33685 5.41757 5.49334 5.51353 5.54084 5.63049 5.64354 5.66701 5.69981 5.72109 5.83127 5.86205 5.90177 5.99122 6.12332 6.53514 7.03268 7.09534 7.11832 7.42208 7.56200 7.83720 8.12045 8.57622 8.92892 9.40134 9.80100 10.80027 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026281 B = 0.001855 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.170991 B =15094.741285 C =15226.512594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 H 0.098 0.902 4 C 0.521 3.479 5 O -0.534 6.534 6 N -0.730 5.730 7 C 0.099 3.901 8 C 0.120 3.880 9 O -0.532 6.532 10 C -0.161 4.161 11 C 0.053 3.947 12 N -0.486 5.486 13 C 0.031 3.969 14 C 0.451 3.549 15 O -0.562 6.562 16 N -0.589 5.589 17 C -0.305 4.305 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.881 5.881 21 Si 0.879 3.121 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.269 1.269 25 C 0.049 3.951 26 C -0.136 4.136 27 C -0.178 4.178 28 C -0.178 4.178 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.398 0.602 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.367 0.633 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.042 0.958 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.050 0.950 42 H 0.371 0.629 43 H 0.273 0.727 44 H 0.093 0.907 45 H 0.059 0.941 46 H 0.116 0.884 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.095 0.905 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.244 -9.542 -27.707 29.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.102 4.102 3 H 0.116 0.884 4 C 0.307 3.693 5 O -0.410 6.410 6 N -0.383 5.383 7 C -0.025 4.025 8 C 0.078 3.922 9 O -0.336 6.336 10 C -0.199 4.199 11 C -0.075 4.075 12 N -0.210 5.210 13 C -0.100 4.100 14 C 0.236 3.764 15 O -0.444 6.444 16 N -0.228 5.228 17 C -0.434 4.434 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.520 5.520 21 Si 0.706 3.294 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.194 1.194 25 C -0.079 4.079 26 C -0.155 4.155 27 C -0.215 4.215 28 C -0.215 4.215 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.233 0.767 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.214 0.786 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.123 0.877 40 H 0.111 0.889 41 H 0.068 0.932 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.112 0.888 45 H 0.077 0.923 46 H 0.134 0.866 47 H 0.112 0.888 48 H 0.113 0.887 49 H 0.114 0.886 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.482 -9.724 -26.938 29.364 hybrid contribution 1.514 -0.503 -0.177 1.605 sum -4.968 -10.227 -27.115 29.402 Atomic orbital electron populations 1.21767 0.92335 1.03120 1.02767 1.20875 0.97553 1.00022 0.91734 0.88429 1.20549 0.79861 0.84518 0.84334 1.90710 1.37398 1.26203 1.86660 1.45942 1.54378 1.32236 1.05720 1.22023 1.00133 0.97095 0.83245 1.22274 0.81877 0.94568 0.93462 1.86716 1.17023 1.84359 1.45515 1.23271 1.01621 0.96054 0.98997 1.22841 1.00122 0.94876 0.89645 1.64632 1.48004 1.01497 1.06906 1.22176 0.94799 0.98770 0.94285 1.19598 0.83904 0.89327 0.83521 1.90536 1.45797 1.36571 1.71533 1.42195 1.40500 1.15092 1.25031 1.19423 1.25506 0.92981 1.05447 0.86260 1.25039 0.97720 0.97212 0.96156 1.69617 1.38672 1.27118 1.16640 0.86677 0.80992 0.82559 0.79208 1.19670 1.20126 1.19429 1.23199 0.98966 0.95889 0.89857 1.22040 1.03651 1.00124 0.89678 1.23034 0.92592 1.01904 1.03941 1.22991 0.98209 1.03245 0.97010 0.92008 0.91127 0.91743 0.76705 0.90360 0.90271 0.78622 0.90909 0.90437 0.93970 0.87689 0.88853 0.93178 0.79675 0.91594 0.88838 0.92295 0.86609 0.88823 0.88687 0.88646 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.62 8.93 37.16 0.33 -0.29 16 2 C -0.08 -0.50 2.88 -91.77 -0.26 -0.76 16 3 H 0.10 0.48 7.90 -51.93 -0.41 0.07 16 4 C 0.52 4.70 7.15 -10.99 -0.08 4.62 16 5 O -0.53 -7.03 15.65 5.55 0.09 -6.95 16 6 N -0.73 -5.27 5.02 -60.29 -0.30 -5.57 16 7 C 0.10 0.89 4.76 -4.04 -0.02 0.87 16 8 C 0.12 1.23 1.03 -88.76 -0.09 1.14 16 9 O -0.53 -5.70 13.12 -35.23 -0.46 -6.16 16 10 C -0.16 -1.75 5.71 -25.37 -0.14 -1.89 16 11 C 0.05 0.83 5.06 -2.75 -0.01 0.82 16 12 N -0.49 -7.83 5.26 -231.89 -1.22 -9.05 16 13 C 0.03 0.53 5.48 -4.97 -0.03 0.50 16 14 C 0.45 10.15 7.36 -10.98 -0.08 10.07 16 15 O -0.56 -14.68 13.37 5.54 0.07 -14.60 16 16 N -0.59 -13.96 5.09 -10.96 -0.06 -14.01 16 17 C -0.30 -8.57 10.16 -14.94 -0.15 -8.72 16 18 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 19 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 20 N -0.88 -25.62 13.96 55.50 0.77 -24.85 16 21 Si 0.88 19.31 27.74 -169.99 -4.71 14.59 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 25 C 0.05 0.60 5.72 -1.90 -0.01 0.59 16 26 C -0.14 -0.97 4.75 -90.62 -0.43 -1.40 16 27 C -0.18 -1.15 10.18 -26.69 -0.27 -1.42 16 28 C -0.18 -0.95 9.74 -26.70 -0.26 -1.21 16 29 H 0.06 0.19 7.56 -51.93 -0.39 -0.21 16 30 H 0.07 0.25 7.29 -51.93 -0.38 -0.13 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.40 1.90 6.80 -40.82 -0.28 1.62 16 33 H 0.08 0.76 8.13 -51.93 -0.42 0.34 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.37 2.41 8.05 45.56 0.37 2.78 16 36 H 0.07 0.71 7.86 -51.93 -0.41 0.30 16 37 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 38 H 0.04 0.70 7.59 -51.93 -0.39 0.31 16 39 H 0.10 2.00 6.75 -51.93 -0.35 1.65 16 40 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.05 0.73 7.89 -51.93 -0.41 0.32 16 42 H 0.37 7.72 5.76 -40.82 -0.24 7.49 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.06 0.63 7.75 -51.93 -0.40 0.23 16 46 H 0.12 1.04 7.47 -51.93 -0.39 0.65 16 47 H 0.09 0.55 8.05 -51.93 -0.42 0.13 16 48 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.09 0.41 7.61 -51.93 -0.40 0.02 16 LS Contribution 399.45 15.07 6.02 6.02 Total: -1.00 -35.41 399.45 -8.84 -44.24 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -7.43 Total: 12.38 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -1.61 Total: 3.95 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.80 Total: -53.49 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.30 Total: -27.71 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.59 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.41 -8.84 -44.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724391008.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.481 kcal (2) G-P(sol) polarization free energy of solvation -35.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds