Wall clock time and date at job start Sat Apr 11 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46971 * 2 1 4 4 C 1.50701 * 109.46673 * 119.99881 * 2 1 3 5 5 O 1.21286 * 119.99303 * 120.00159 * 4 2 1 6 6 N 1.34772 * 120.00170 * 299.99784 * 4 2 1 7 7 C 1.46503 * 119.99983 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46807 * 180.02562 * 7 6 4 9 9 O 1.42900 * 110.64943 * 61.84746 * 8 7 6 10 10 C 1.54591 * 110.87460 * 298.58421 * 8 7 6 11 11 C 1.54002 * 105.14001 * 219.61874 * 10 8 7 12 12 N 1.47900 * 107.05481 * 358.77246 * 11 10 8 13 13 C 1.46908 * 110.99815 * 145.84530 * 12 11 10 14 14 C 1.50695 * 109.46810 * 52.60651 * 13 12 11 15 15 O 1.21295 * 120.00406 * 359.97438 * 14 13 12 16 16 N 1.34784 * 120.00043 * 180.02562 * 14 13 12 17 17 C 1.37092 * 120.00099 * 179.97438 * 16 14 13 18 18 H 1.08000 * 120.00013 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00067 * 179.97438 * 17 16 14 20 20 N 1.31412 * 120.00394 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99874 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47088 * 90.00037 * 21 19 17 23 23 H 1.48502 * 109.47103 * 210.00113 * 21 19 17 24 24 H 1.48503 * 109.47049 * 329.99816 * 21 19 17 25 25 C 1.48531 * 105.82143 * 25.33289 * 12 11 10 26 26 C 1.53000 * 109.46893 * 239.99767 * 2 1 3 27 27 C 1.52998 * 117.49879 * 128.75170 * 26 2 1 28 28 C 1.52996 * 117.49990 * 60.09071 * 26 2 1 29 29 H 1.09000 * 109.47084 * 300.00771 * 1 2 3 30 30 H 1.09002 * 109.47098 * 60.00188 * 1 2 3 31 31 H 1.09003 * 109.47371 * 180.02562 * 1 2 3 32 32 H 0.97005 * 120.00026 * 359.97438 * 6 4 2 33 33 H 1.08992 * 109.47542 * 59.99503 * 7 6 4 34 34 H 1.09000 * 109.46345 * 299.99620 * 7 6 4 35 35 H 0.96699 * 113.99294 * 303.15268 * 9 8 7 36 36 H 1.09004 * 110.31234 * 338.53038 * 10 8 7 37 37 H 1.09001 * 110.31387 * 100.60359 * 10 8 7 38 38 H 1.08993 * 109.91860 * 118.13167 * 11 10 8 39 39 H 1.09004 * 109.91704 * 239.42337 * 11 10 8 40 40 H 1.08995 * 109.46865 * 172.60370 * 13 12 11 41 41 H 1.08999 * 109.47057 * 292.60920 * 13 12 11 42 42 H 0.96999 * 119.99852 * 359.97438 * 16 14 13 43 43 H 0.96993 * 120.00306 * 180.02562 * 20 19 17 44 44 H 1.09001 * 110.67185 * 202.35127 * 25 12 11 45 45 H 1.09004 * 110.66470 * 79.22703 * 25 12 11 46 46 H 1.08996 * 115.54932 * 274.41701 * 26 2 1 47 47 H 1.09003 * 117.49873 * 359.97438 * 27 26 2 48 48 H 1.08997 * 117.50437 * 145.01629 * 27 26 2 49 49 H 1.09003 * 117.49768 * 214.97710 * 28 26 2 50 50 H 1.09000 * 117.50008 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.1954 -0.9402 3.6508 8 6 1.6847 -0.2193 4.9000 9 8 0.2567 -0.2429 4.9470 10 6 2.2100 1.2337 4.9508 11 6 2.5521 1.4862 6.4309 12 7 2.2077 0.2536 7.1721 13 6 3.1413 0.0297 8.2841 14 6 3.2157 1.2712 9.1351 15 8 2.5563 2.2467 8.8437 16 7 4.0157 1.2980 10.2194 17 6 4.0838 2.4276 10.9933 18 1 3.4967 3.2961 10.7338 19 6 4.9082 2.4551 12.1115 20 7 4.9731 3.5376 12.8536 21 14 5.9243 0.9531 12.5599 22 1 7.2473 1.0325 11.8901 23 1 6.1165 0.9069 14.0317 24 1 5.2167 -0.2742 12.1143 25 6 2.2859 -0.8500 6.1811 26 6 2.0400 -0.7213 -1.2492 27 6 3.0764 0.0038 -2.1101 28 6 1.6375 -0.1484 -2.6096 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.1493 0.5390 2.5436 33 1 3.2853 -0.9400 3.6507 34 1 1.8323 -1.9680 3.6509 35 1 -0.1687 0.1406 4.1679 36 1 3.1027 1.3352 4.3336 37 1 1.4384 1.9269 4.6157 38 1 3.6163 1.6973 6.5353 39 1 1.9659 2.3234 6.8099 40 1 2.7908 -0.8057 8.8901 41 1 4.1305 -0.1987 7.8876 42 1 4.5433 0.5181 10.4523 43 1 5.5489 3.5569 13.6339 44 1 1.6895 -1.7024 6.5066 45 1 3.3220 -1.1452 6.0150 46 1 2.1253 -1.8046 -1.1646 47 1 3.3946 0.9949 -1.7866 48 1 3.8432 -0.6025 -2.5921 49 1 1.4583 -0.8549 -3.4201 50 1 1.0090 0.7421 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724391008.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:39 Heat of formation + Delta-G solvation = -114.317167 kcal Electronic energy + Delta-G solvation = -29608.538576 eV Core-core repulsion = 25442.504720 eV Total energy + Delta-G solvation = -4166.033855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.47349 -40.79929 -39.79014 -38.19512 -37.08482 -35.90971 -35.36433 -33.79620 -33.28380 -32.27689 -30.27129 -28.80142 -26.83040 -25.86617 -25.12242 -23.13560 -22.80011 -22.04404 -21.61062 -21.21896 -20.63759 -20.10500 -18.86319 -17.92627 -17.62171 -17.15887 -16.91158 -16.58531 -16.42994 -16.35023 -15.87505 -15.64584 -15.38936 -15.18895 -14.89305 -14.74318 -14.58047 -14.48654 -14.21048 -13.89520 -13.79504 -13.51273 -13.20394 -13.14784 -13.07238 -12.88023 -12.76509 -12.51359 -12.40355 -12.29464 -12.08155 -11.98870 -11.89669 -11.79413 -11.50834 -11.28139 -11.04010 -10.93788 -10.73452 -10.32767 -10.24770 -10.18150 -9.31956 -8.42370 -6.03158 1.29762 1.34142 1.43559 1.61654 1.92836 2.02711 2.21876 2.65372 2.92771 2.99789 3.13885 3.24120 3.48245 3.58413 3.65534 3.69701 3.72920 4.00249 4.11085 4.14560 4.18989 4.33860 4.34313 4.34991 4.45847 4.48913 4.51564 4.61666 4.66013 4.72551 4.79653 4.81923 4.84906 4.89863 4.99399 5.05007 5.07208 5.24338 5.26136 5.28570 5.32481 5.40306 5.51457 5.86545 5.92002 6.01715 6.45434 6.58049 6.80468 6.86822 7.20181 7.37575 7.94150 8.75082 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026281 B = 0.001855 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.170991 B =15094.741285 C =15226.512594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.073 4.073 3 H 0.117 0.883 4 C 0.519 3.481 5 O -0.581 6.581 6 N -0.717 5.717 7 C 0.110 3.890 8 C 0.135 3.865 9 O -0.549 6.549 10 C -0.149 4.149 11 C 0.053 3.947 12 N -0.511 5.511 13 C 0.042 3.958 14 C 0.449 3.551 15 O -0.605 6.605 16 N -0.590 5.590 17 C -0.327 4.327 18 H 0.056 0.944 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.964 3.036 22 H -0.257 1.257 23 H -0.275 1.275 24 H -0.232 1.232 25 C 0.045 3.955 26 C -0.153 4.153 27 C -0.187 4.187 28 C -0.161 4.161 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.413 0.587 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.385 0.615 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.026 0.974 39 H 0.060 0.940 40 H 0.119 0.881 41 H 0.083 0.917 42 H 0.389 0.611 43 H 0.279 0.721 44 H 0.099 0.901 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.101 0.899 48 H 0.088 0.912 49 H 0.098 0.902 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.992 -11.856 -29.414 32.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.094 4.094 3 H 0.134 0.866 4 C 0.306 3.694 5 O -0.460 6.460 6 N -0.370 5.370 7 C -0.014 4.014 8 C 0.093 3.907 9 O -0.356 6.356 10 C -0.187 4.187 11 C -0.075 4.075 12 N -0.235 5.235 13 C -0.089 4.089 14 C 0.237 3.763 15 O -0.489 6.489 16 N -0.232 5.232 17 C -0.457 4.457 18 H 0.074 0.926 19 C -0.213 4.213 20 N -0.574 5.574 21 Si 0.783 3.217 22 H -0.181 1.181 23 H -0.200 1.200 24 H -0.155 1.155 25 C -0.082 4.082 26 C -0.171 4.171 27 C -0.224 4.224 28 C -0.197 4.197 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.250 0.750 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.235 0.765 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.044 0.956 39 H 0.079 0.921 40 H 0.137 0.863 41 H 0.100 0.900 42 H 0.225 0.775 43 H 0.089 0.911 44 H 0.117 0.883 45 H 0.098 0.902 46 H 0.108 0.892 47 H 0.120 0.880 48 H 0.107 0.893 49 H 0.117 0.883 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.270 -12.029 -28.676 31.723 hybrid contribution 1.323 0.322 0.299 1.394 sum -4.947 -11.707 -28.377 31.093 Atomic orbital electron populations 1.21792 0.90750 1.02849 1.04358 1.20893 0.98700 1.00192 0.89658 0.86564 1.21089 0.79003 0.83935 0.85332 1.90694 1.39621 1.28369 1.87314 1.45813 1.53983 1.32360 1.04855 1.21803 0.99832 0.96717 0.83087 1.22053 0.81797 0.93712 0.93175 1.86682 1.17201 1.84659 1.47091 1.23191 1.02907 0.97028 0.95601 1.22656 0.98238 0.93859 0.92752 1.64556 1.48236 1.02804 1.07936 1.22123 0.97089 0.95644 0.94073 1.20814 0.81885 0.90662 0.82986 1.90536 1.47050 1.38949 1.72406 1.42022 1.41574 1.14439 1.25175 1.18992 1.26131 0.93161 1.07367 0.92590 1.26098 0.98625 1.01457 0.95122 1.69797 1.39911 1.30256 1.17432 0.85383 0.79120 0.78346 0.78801 1.18141 1.20005 1.15534 1.23330 1.00619 0.94700 0.89571 1.21993 1.05028 0.98957 0.91165 1.23113 0.93122 1.02063 1.04111 1.23066 0.97411 1.03523 0.95735 0.90272 0.89732 0.92937 0.74986 0.90674 0.90835 0.76513 0.89265 0.88930 0.95564 0.92104 0.86292 0.89957 0.77531 0.91141 0.88322 0.90186 0.89230 0.88049 0.89315 0.88318 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 8.93 71.98 0.64 -0.20 16 2 C -0.07 -0.75 2.88 -11.54 -0.03 -0.79 16 3 H 0.12 0.78 7.90 -2.39 -0.02 0.77 16 4 C 0.52 8.53 7.15 87.66 0.63 9.16 16 5 O -0.58 -15.06 15.65 -3.05 -0.05 -15.11 16 6 N -0.72 -8.54 5.02 -463.06 -2.32 -10.86 16 7 C 0.11 1.71 4.76 86.38 0.41 2.12 16 8 C 0.13 2.41 1.03 -9.59 -0.01 2.40 16 9 O -0.55 -10.38 13.12 -148.98 -1.96 -12.33 16 10 C -0.15 -2.94 5.71 31.47 0.18 -2.76 16 11 C 0.05 1.67 5.06 86.45 0.44 2.11 16 12 N -0.51 -15.74 5.26 -887.56 -4.67 -20.41 16 13 C 0.04 1.32 5.48 85.55 0.47 1.79 16 14 C 0.45 20.39 7.36 87.65 0.64 21.04 16 15 O -0.61 -33.21 13.37 -3.08 -0.04 -33.25 16 16 N -0.59 -27.98 5.09 -306.98 -1.56 -29.54 16 17 C -0.33 -19.21 10.16 84.04 0.85 -18.36 16 18 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 19 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 20 N -0.93 -56.32 13.96 21.66 0.30 -56.02 16 21 Si 0.96 38.87 27.74 68.60 1.90 40.77 16 22 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 24 H -0.23 -7.92 6.52 99.48 0.65 -7.27 16 25 C 0.05 0.98 5.72 86.65 0.50 1.48 16 26 C -0.15 -2.04 4.75 -10.80 -0.05 -2.09 16 27 C -0.19 -2.20 10.18 30.62 0.31 -1.89 16 28 C -0.16 -1.42 9.74 30.62 0.30 -1.12 16 29 H 0.08 0.20 7.56 -2.39 -0.02 0.18 16 30 H 0.08 0.31 7.29 -2.39 -0.02 0.29 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.41 2.55 6.80 -92.70 -0.63 1.92 16 33 H 0.07 1.27 8.13 -2.39 -0.02 1.25 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.39 3.90 8.05 -74.06 -0.60 3.30 16 36 H 0.09 1.50 7.86 -2.38 -0.02 1.49 16 37 H 0.09 1.56 8.08 -2.39 -0.02 1.54 16 38 H 0.03 0.88 7.59 -2.39 -0.02 0.86 16 39 H 0.06 2.44 6.75 -2.38 -0.02 2.42 16 40 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.08 2.10 7.89 -2.39 -0.02 2.09 16 42 H 0.39 15.29 5.76 -92.71 -0.53 14.76 16 43 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 44 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.08 1.41 7.75 -2.39 -0.02 1.39 16 46 H 0.09 1.67 7.47 -2.39 -0.02 1.66 16 47 H 0.10 1.01 8.05 -2.39 -0.02 0.99 16 48 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.11 0.61 7.61 -2.39 -0.02 0.59 16 Total: -1.00 -84.62 399.45 -3.50 -88.11 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: -0.85 Total: 36.09 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 5.74 Total: 12.55 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -8.26 Total: -116.83 kcal Atomic # 8 Polarization: -58.65 SS G_CDS: -2.04 Total: -60.69 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 1.90 Total: 40.77 kcal Total: -84.62 -3.50 -88.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724391008.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.203 kcal (2) G-P(sol) polarization free energy of solvation -84.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds