Wall clock time and date at job start Sat Apr 11 2020 05:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47386 * 2 1 4 4 C 1.50694 * 109.47232 * 239.99405 * 2 1 3 5 5 O 1.21285 * 120.00154 * 240.00290 * 4 2 1 6 6 N 1.34780 * 120.00135 * 60.00167 * 4 2 1 7 7 C 1.46500 * 119.99955 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.46709 * 180.02562 * 7 6 4 9 9 O 1.42894 * 110.90149 * 303.86407 * 8 7 6 10 10 C 1.55394 * 111.02391 * 67.60475 * 8 7 6 11 11 C 1.54323 * 102.89709 * 153.63418 * 10 8 7 12 12 N 1.47441 * 107.37092 * 337.89293 * 11 10 8 13 13 C 1.46899 * 110.99964 * 236.66280 * 12 11 10 14 14 C 1.50699 * 109.47326 * 176.64981 * 13 12 11 15 15 O 1.21299 * 119.99842 * 6.12626 * 14 13 12 16 16 N 1.34771 * 120.00290 * 186.12786 * 14 13 12 17 17 C 1.37101 * 120.00296 * 180.02562 * 16 14 13 18 18 H 1.08003 * 119.99299 * 359.97438 * 17 16 14 19 19 C 1.38945 * 120.00059 * 179.97438 * 17 16 14 20 20 N 1.31414 * 120.00055 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99973 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46636 * 89.99991 * 21 19 17 23 23 H 1.48501 * 109.47061 * 209.99744 * 21 19 17 24 24 H 1.48492 * 109.46829 * 330.00151 * 21 19 17 25 25 C 1.47848 * 108.56525 * 358.92790 * 12 11 10 26 26 C 1.53004 * 109.46753 * 119.99229 * 2 1 3 27 27 C 1.52991 * 117.50119 * 248.74627 * 26 2 1 28 28 C 1.52996 * 117.49827 * 180.08135 * 26 2 1 29 29 H 1.09005 * 109.46637 * 60.00200 * 1 2 3 30 30 H 1.08995 * 109.47398 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47367 * 300.00811 * 1 2 3 32 32 H 0.97001 * 119.99651 * 0.02562 * 6 4 2 33 33 H 1.08995 * 109.47263 * 60.00038 * 7 6 4 34 34 H 1.09003 * 109.46662 * 299.99657 * 7 6 4 35 35 H 0.96699 * 114.00130 * 56.13666 * 9 8 7 36 36 H 1.08991 * 110.68539 * 35.32826 * 10 8 7 37 37 H 1.09007 * 110.84735 * 272.01219 * 10 8 7 38 38 H 1.08995 * 109.88817 * 218.40171 * 11 10 8 39 39 H 1.09003 * 109.88542 * 97.37801 * 11 10 8 40 40 H 1.09007 * 109.46960 * 296.64772 * 13 12 11 41 41 H 1.08998 * 109.47400 * 56.64670 * 13 12 11 42 42 H 0.97003 * 120.00050 * 359.97438 * 16 14 13 43 43 H 0.96998 * 119.99737 * 180.02562 * 20 19 17 44 44 H 1.09003 * 110.37310 * 142.92469 * 25 12 11 45 45 H 1.08998 * 110.37431 * 265.15610 * 25 12 11 46 46 H 1.09001 * 115.54938 * 34.42012 * 26 2 1 47 47 H 1.09000 * 117.50295 * 359.97438 * 27 26 2 48 48 H 1.09000 * 117.49968 * 145.02228 * 27 26 2 49 49 H 1.09002 * 117.50343 * 214.98348 * 28 26 2 50 50 H 1.09004 * 117.49930 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 8 2.7296 -1.6966 -1.1190 6 7 1.7068 -0.2502 -2.4545 7 6 2.1947 -0.9412 -3.6506 8 6 1.6853 -0.2196 -4.8999 9 8 0.2598 -0.1222 -4.8868 10 6 2.3351 1.1854 -5.0360 11 6 2.2806 1.4443 -6.5564 12 7 2.1713 0.1334 -7.2225 13 6 3.2643 -0.0611 -8.1844 14 6 3.1668 -1.4405 -8.7835 15 8 2.2143 -2.1467 -8.5280 16 7 4.1378 -1.8894 -9.6032 17 6 4.0488 -3.1441 -10.1486 18 1 3.2007 -3.7728 -9.9210 19 6 5.0497 -3.6067 -10.9941 20 7 6.0814 -2.8414 -11.2713 21 14 4.9288 -5.3165 -11.7367 22 1 4.2103 -5.2428 -13.0342 23 1 6.2938 -5.8583 -11.9568 24 1 4.1861 -6.2074 -10.8095 25 6 2.1818 -0.9227 -6.1879 26 6 2.0399 -0.7211 1.2494 27 6 2.7392 0.1233 2.3165 28 6 3.5549 -0.8263 1.4355 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 1.1494 0.5387 -2.5436 33 1 1.8310 -1.9687 -3.6504 34 1 3.2847 -0.9416 -3.6507 35 1 -0.0976 0.3109 -4.0996 36 1 3.3667 1.1681 -4.6848 37 1 1.7557 1.9347 -4.4965 38 1 3.1908 1.9495 -6.8794 39 1 1.4115 2.0563 -6.7974 40 1 3.1890 0.6848 -8.9757 41 1 4.2212 0.0464 -7.6737 42 1 4.8994 -1.3245 -9.8078 43 1 6.7799 -3.1643 -11.8618 44 1 1.5048 -1.7311 -6.4639 45 1 3.1923 -1.3062 -6.0474 46 1 1.4317 -1.5593 1.5896 47 1 2.8364 1.1925 2.1284 48 1 2.5913 -0.1596 3.3587 49 1 3.9434 -1.7334 1.8985 50 1 4.1883 -0.3821 0.6676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724391009.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:44 Heat of formation + Delta-G solvation = -89.199367 kcal Electronic energy + Delta-G solvation = -29896.805195 eV Core-core repulsion = 25731.860530 eV Total energy + Delta-G solvation = -4164.944666 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.59038 -39.63811 -38.07895 -37.31224 -35.88610 -34.48814 -33.87888 -32.81672 -31.38631 -30.95211 -29.35356 -27.18450 -25.70938 -24.74842 -23.98201 -22.62460 -21.90870 -21.03931 -20.63394 -20.05935 -19.18858 -17.97033 -17.77302 -16.97349 -16.32356 -15.90921 -15.71403 -15.40992 -15.18672 -15.12943 -14.89262 -14.53091 -14.35891 -14.11416 -13.81137 -13.62592 -13.12843 -13.08332 -12.96774 -12.73488 -12.51524 -12.42092 -12.14619 -12.05508 -11.84075 -11.74237 -11.52175 -11.46212 -11.33099 -11.16051 -10.91906 -10.77968 -10.74171 -10.40212 -10.37922 -10.20730 -10.09038 -9.84742 -9.47792 -9.35867 -8.37757 -7.97408 -7.87092 -6.40745 -3.81385 2.40480 2.74626 3.19189 3.27817 3.33886 3.57100 3.89556 3.94280 4.03880 4.13141 4.20620 4.35188 4.38936 4.46297 4.57329 4.63285 4.71768 4.81716 4.85971 5.06348 5.09409 5.15891 5.21600 5.25815 5.28485 5.34069 5.42923 5.50800 5.59121 5.61961 5.62965 5.67592 5.69611 5.77438 5.81601 5.86336 5.91534 5.98825 6.05439 6.09140 6.28280 6.52814 7.13963 7.21527 7.28904 7.50794 7.56578 7.96728 8.07239 8.62553 9.19186 9.55008 10.06700 10.76995 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016304 B = 0.002142 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.979067 B =13066.236725 C =13931.625840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 H 0.096 0.904 4 C 0.515 3.485 5 O -0.525 6.525 6 N -0.731 5.731 7 C 0.101 3.899 8 C 0.109 3.891 9 O -0.528 6.528 10 C -0.166 4.166 11 C 0.046 3.954 12 N -0.500 5.500 13 C 0.039 3.961 14 C 0.440 3.560 15 O -0.577 6.577 16 N -0.564 5.564 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 C 0.075 3.925 26 C -0.137 4.137 27 C -0.183 4.183 28 C -0.156 4.156 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.394 0.606 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.362 0.638 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.111 0.889 45 H 0.058 0.942 46 H 0.107 0.893 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.094 0.906 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.972 13.142 23.563 27.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 H 0.114 0.886 4 C 0.301 3.699 5 O -0.400 6.400 6 N -0.384 5.384 7 C -0.023 4.023 8 C 0.066 3.934 9 O -0.332 6.332 10 C -0.205 4.205 11 C -0.082 4.082 12 N -0.224 5.224 13 C -0.093 4.093 14 C 0.225 3.775 15 O -0.461 6.461 16 N -0.200 5.200 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.194 1.194 25 C -0.053 4.053 26 C -0.155 4.155 27 C -0.220 4.220 28 C -0.193 4.193 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.229 0.771 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.208 0.792 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.064 0.936 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.129 0.871 45 H 0.076 0.924 46 H 0.125 0.875 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.113 0.887 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.314 11.550 22.794 26.579 hybrid contribution 1.083 0.350 0.254 1.166 sum -6.231 11.901 23.048 26.677 Atomic orbital electron populations 1.21756 0.92339 1.03098 1.02721 1.20906 0.97632 0.99852 0.91751 0.88580 1.20642 0.80193 0.84801 0.84259 1.90740 1.36949 1.25738 1.86549 1.45962 1.54484 1.32118 1.05867 1.21950 1.00084 0.97374 0.82899 1.22733 0.81539 0.94299 0.94796 1.86780 1.18657 1.82236 1.45501 1.23511 1.01489 0.97256 0.98235 1.22805 1.01371 0.92569 0.91435 1.63338 1.43597 1.00834 1.14638 1.22168 0.92271 0.98287 0.96557 1.19739 0.85102 0.88255 0.84388 1.90522 1.33351 1.58390 1.63804 1.41865 1.20717 1.15995 1.41452 1.19703 1.07360 0.91465 1.24206 0.87878 1.25264 0.95280 0.99940 0.97507 1.69613 1.10311 1.37360 1.37074 0.85856 0.77371 0.81717 0.79348 1.20396 1.20959 1.19403 1.22961 1.00756 0.95450 0.86095 1.21940 0.96323 1.01575 0.95679 1.23105 1.05132 0.97486 0.96314 1.22802 0.93412 1.01168 1.01933 0.92034 0.91763 0.91134 0.77122 0.90035 0.90350 0.79156 0.90516 0.90603 0.92712 0.90346 0.89042 0.93551 0.77511 0.91896 0.87083 0.92431 0.87458 0.88918 0.88725 0.88750 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.70 9.07 37.16 0.34 -0.36 16 2 C -0.08 -0.54 2.88 -91.77 -0.26 -0.81 16 3 H 0.10 0.50 7.90 -51.93 -0.41 0.09 16 4 C 0.52 5.17 7.03 -10.99 -0.08 5.10 16 5 O -0.52 -7.58 15.09 5.55 0.08 -7.50 16 6 N -0.73 -6.09 5.09 -60.29 -0.31 -6.40 16 7 C 0.10 1.14 4.88 -4.04 -0.02 1.12 16 8 C 0.11 1.29 0.97 -88.34 -0.09 1.21 16 9 O -0.53 -6.36 13.19 -35.23 -0.46 -6.82 16 10 C -0.17 -1.64 5.94 -24.77 -0.15 -1.78 16 11 C 0.05 0.57 6.89 -2.83 -0.02 0.55 16 12 N -0.50 -8.45 5.07 -232.69 -1.18 -9.63 16 13 C 0.04 0.70 5.07 -4.98 -0.03 0.67 16 14 C 0.44 10.43 7.34 -10.99 -0.08 10.35 16 15 O -0.58 -15.61 13.89 5.54 0.08 -15.53 16 16 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 17 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 18 H 0.10 3.03 7.16 -52.48 -0.38 2.66 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.67 13.05 55.50 0.72 -23.94 16 21 Si 0.93 21.28 29.55 -169.99 -5.02 16.25 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 25 C 0.08 1.26 4.48 -2.30 -0.01 1.25 16 26 C -0.14 -1.06 4.72 -90.62 -0.43 -1.49 16 27 C -0.18 -1.17 10.18 -26.70 -0.27 -1.44 16 28 C -0.16 -1.35 8.98 -26.69 -0.24 -1.59 16 29 H 0.06 0.22 7.57 -51.93 -0.39 -0.18 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.39 2.07 6.69 -40.82 -0.27 1.80 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 35 H 0.36 2.61 7.69 45.56 0.35 2.96 16 36 H 0.08 0.73 8.00 -51.93 -0.42 0.31 16 37 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.05 0.61 7.58 -51.93 -0.39 0.22 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 41 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 42 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.11 2.28 6.94 -51.93 -0.36 1.92 16 45 H 0.06 0.98 7.63 -51.93 -0.40 0.59 16 46 H 0.11 0.86 8.11 -51.93 -0.42 0.44 16 47 H 0.09 0.50 8.05 -51.93 -0.42 0.08 16 48 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 404.11 15.07 6.09 6.09 Total: -1.00 -34.68 404.11 -9.24 -43.92 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -7.61 Total: 13.20 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -1.57 Total: 4.77 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.82 Total: -54.37 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.30 Total: -29.85 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.68 -9.24 -43.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724391009.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.284 kcal (2) G-P(sol) polarization free energy of solvation -34.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds